mRNA_M-pyrifera_M_contig93630.21625.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93630.21625.1
Unique NamemRNA_M-pyrifera_M_contig93630.21625.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93630.21625.1 vs. uniprot
Match: A0A7C7YG37_9DELT (Uncharacterized protein n=2 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7YG37_9DELT)

HSP 1 Score: 65.1 bits (157), Expect = 6.780e-10
Identity = 43/124 (34.68%), Postives = 62/124 (50.00%), Query Frame = 1 
Query:   49 CLESNSTSAFVMGNSSPDAVK-----GLGLHSYEFAGALYLYALSLSEQTSRGEQLTMGEYPFDFPSAAVAFAAGFGSHMSEDTVGHHNDGYLTPAY----DHPLELAVDTYEYKNYSGRYQFQ 393
            C  + S  +FV+G+S+PDA K     G  LH +++A     YA      T+           FD    AV ++  FG+H++ED VGHH DGYL        DH  E A+DT + + + G Y+ Q
Sbjct:   44 CFAAASARSFVLGSSAPDAFKLYLEGGRELHRFDYAAFQLRYAQGNPGTTTEN---------FD----AVGYSRAFGTHLAEDAVGHHPDGYLPGGVGATKDHLHEAALDTNQARTFPGLYESQ 154
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93630.21625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C7YG37_9DELT6.780e-1034.68Uncharacterized protein n=2 Tax=Myxococcales bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93630contigM-pyrifera_M_contig93630:72..464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816849.201782-CDS-M-pyrifera_M_contig93630:71..4581622816849.201782-CDS-M-pyrifera_M_contig93630:71..458Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93630 72..458 -
1692278214.5607877-CDS-M-pyrifera_M_contig93630:71..4581692278214.5607877-CDS-M-pyrifera_M_contig93630:71..458Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93630 72..458 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816849.2127078-UTR-M-pyrifera_M_contig93630:458..4641622816849.2127078-UTR-M-pyrifera_M_contig93630:458..464Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93630 459..464 -
1692278214.5727146-UTR-M-pyrifera_M_contig93630:458..4641692278214.5727146-UTR-M-pyrifera_M_contig93630:458..464Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93630 459..464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93630.21625.1prot_M-pyrifera_M_contig93630.21625.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93630 72..458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93630.21625.1

>prot_M-pyrifera_M_contig93630.21625.1 ID=prot_M-pyrifera_M_contig93630.21625.1|Name=mRNA_M-pyrifera_M_contig93630.21625.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MGCSLVTQGPAGKECLESNSTSAFVMGNSSPDAVKGLGLHSYEFAGALYL
YALSLSEQTSRGEQLTMGEYPFDFPSAAVAFAAGFGSHMSEDTVGHHNDG
YLTPAYDHPLELAVDTYEYKNYSGRYQFQ
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mRNA from alignment at M-pyrifera_M_contig93630:72..464-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93630.21625.1 ID=mRNA_M-pyrifera_M_contig93630.21625.1|Name=mRNA_M-pyrifera_M_contig93630.21625.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig93630:72..464- (Macrocystis pyrifera P11B4 male)
CAGCTCATGGGCTGTTCGTTGGTGACCCAAGGGCCAGCAGGAAAGGAATG
CCTTGAATCGAATTCCACCAGCGCTTTCGTGATGGGCAACTCCTCCCCAG
ACGCCGTGAAGGGCTTGGGGTTGCACTCCTACGAGTTTGCGGGCGCTCTC
TATCTCTATGCTCTGTCCCTCTCAGAACAGACATCTCGAGGCGAACAACT
GACAATGGGCGAGTATCCCTTTGACTTTCCTTCAGCAGCAGTTGCGTTTG
CAGCTGGGTTTGGCTCCCACATGTCAGAGGACACAGTGGGCCACCACAAC
GACGGCTACCTCACGCCTGCCTATGACCACCCGCTGGAGCTAGCTGTGGA
CACGTACGAGTACAAGAACTACTCTGGCCGCTACCAGTTCCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93630:72..464-

>mRNA_M-pyrifera_M_contig93630.21625.1 ID=mRNA_M-pyrifera_M_contig93630.21625.1|Name=mRNA_M-pyrifera_M_contig93630.21625.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig93630:72..464- (Macrocystis pyrifera P11B4 male)
ATGGGCTGTTCGTTGGTGACCCAAGGGCCAGCAGGAAAGGAATGCCTTGA
ATCGAATTCCACCAGCGCTTTCGTGATGGGCAACTCCTCCCCAGACGCCG
TGAAGGGCTTGGGGTTGCACTCCTACGAGTTTGCGGGCGCTCTCTATCTC
TATGCTCTGTCCCTCTCAGAACAGACATCTCGAGGCGAACAACTGACAAT
GGGCGAGTATCCCTTTGACTTTCCTTCAGCAGCAGTTGCGTTTGCAGCTG
GGTTTGGCTCCCACATGTCAGAGGACACAGTGGGCCACCACAACGACGGC
TACCTCACGCCTGCCTATGACCACCCGCTGGAGCTAGCTGTGGACACGTA
CGAGTACAAGAACTACTCTGGCCGCTACCAGTTCCAAATGGGCTGTTCGT
TGGTGACCCAAGGGCCAGCAGGAAAGGAATGCCTTGAATCGAATTCCACC
AGCGCTTTCGTGATGGGCAACTCCTCCCCAGACGCCGTGAAGGGCTTGGG
GTTGCACTCCTACGAGTTTGCGGGCGCTCTCTATCTCTATGCTCTGTCCC
TCTCAGAACAGACATCTCGAGGCGAACAACTGACAATGGGCGAGTATCCC
TTTGACTTTCCTTCAGCAGCAGTTGCGTTTGCAGCTGGGTTTGGCTCCCA
CATGTCAGAGGACACAGTGGGCCACCACAACGACGGCTACCTCACGCCTG
CCTATGACCACCCGCTGGAGCTAGCTGTGGACACGTACGAGTACAAGAAC
TACTCTGGCCGCTACCAGTTCCAA
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