mRNA_M-pyrifera_M_contig9358.21617.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9358.21617.1
Unique NamemRNA_M-pyrifera_M_contig9358.21617.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9358.21617.1 vs. uniprot
Match: D8LBL7_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL7_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 4.180e-101
Identity = 154/160 (96.25%), Postives = 158/160 (98.75%), Query Frame = 3 
Query:  165 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCAQMDELMEEAKEEATNGSQGPSRRR 644
            MINF+LLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARA KMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVC+QMD+LMEEAKEEA NG+QGPSRRR
Sbjct:    1 MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARALKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDDLMEEAKEEAANGNQGPSRRR 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig9358.21617.1 vs. uniprot
Match: A0A7S4A8C4_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8C4_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.540e-85
Identity = 131/160 (81.88%), Postives = 148/160 (92.50%), Query Frame = 3 
Query:  165 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCAQMDELMEEAKEE-ATNGSQGPSRR 641
            MINF+LL+SRQGKTRLTKWY++Y+AKEKAR VREITSTVLARAPKMCNFVEWR+KKI+YKRYASLFF+ C+D +DNELITLE IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDE+F+GGEL ESSKKEVL VCAQMDELMEE +E+ A +GS G  R+
Sbjct:    1 MINFLLLVSRQGKTRLTKWYESYAAKEKARIVREITSTVLARAPKMCNFVEWRNKKIIYKRYASLFFIVCVDAEDNELITLEMIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDEIFVGGELCESSKKEVLSVCAQMDELMEEREEDKAASGSSGRVRK 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig9358.21617.1 vs. uniprot
Match: A0A7S2SD76_9STRA (AP complex subunit sigma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD76_9STRA)

HSP 1 Score: 265 bits (677), Expect = 1.410e-84
Identity = 129/165 (78.18%), Postives = 148/165 (89.70%), Query Frame = 3 
Query:  153 RSYTMINFMLLISRQGKTRLTKWYQTY-SAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCAQMDELMEEAKEEATNGSQGPSRRR 644
            R   MINFMLLISRQGKTRLTKWY++Y S KEKAR VREIT+ VL+R PK+CNF+EWRDKK++YKRYASLFFVAC+D++DNEL+TLE IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFI GELQESSKKEVL VCAQMDE+M+E+K+E T+G+     RR
Sbjct:   10 RHGAMINFMLLISRQGKTRLTKWYESYGSTKEKARIVREITAMVLSRPPKLCNFIEWRDKKVIYKRYASLFFVACVDKEDNELVTLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFINGELQESSKKEVLSVCAQMDEMMDESKDEGTSGATKSGSRR 174
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BLAST of mRNA_M-pyrifera_M_contig9358.21617.1 vs. uniprot
Match: A0A835Z7C9_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C9_9STRA)

HSP 1 Score: 262 bits (670), Expect = 7.870e-84
Identity = 124/151 (82.12%), Postives = 144/151 (95.36%), Query Frame = 3 
Query:  165 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCAQMDELMEEAKEEATN 617
            M+NF+LL+SRQGKTRLTKWY+ Y++KEKAR VREIT+ VLAR PKMCNF+EWRDKKIVYKRYASLFFVAC+D+DDNELITLE+IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVC Q+D+LME+ +++ ++
Sbjct:    1 MLNFLLLVSRQGKTRLTKWYEAYTSKEKARIVREITTLVLARPPKMCNFLEWRDKKIVYKRYASLFFVACVDRDDNELITLEQIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCGQIDDLMEDVRDDGSS 151
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BLAST of mRNA_M-pyrifera_M_contig9358.21617.1 vs. uniprot
Match: A0A7S2XUT6_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUT6_9STRA)

HSP 1 Score: 257 bits (656), Expect = 1.130e-81
Identity = 124/151 (82.12%), Postives = 136/151 (90.07%), Query Frame = 3 
Query:  165 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCAQMDELMEEAKEEATN 617
            MINFMLLISRQGKTRLTKWY +Y  KEKAR +REITS VL R PKMCNF+EW+DKKIVYKRYASLFFV CID+ DNELITLE IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDELFI GELQES K+EVLR+C QMD++MEE KE+ +N
Sbjct:    1 MINFMLLISRQGKTRLTKWYDSYGTKEKARIMREITSMVLNRPPKMCNFIEWKDKKIVYKRYASLFFVVCIDKGDNELITLEMIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFIAGELQESGKREVLRICGQMDDMMEEGKEDVSN 151
[Close]
BLAST of mRNA_M-pyrifera_M_contig9358.21617.1 vs. uniprot
Match: W7T3W8_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3W8_9STRA)

HSP 1 Score: 255 bits (651), Expect = 7.560e-81
Identity = 120/148 (81.08%), Postives = 137/148 (92.57%), Query Frame = 3 
Query:  165 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCAQMDELMEEAKEE 608
            MINF+LL+SRQGKTRL+KWY+ Y+ KEKAR +RE+T+ VLARAPKMCNF+EWRDKK++YKRYASLFF+A +D  DNELITLE IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFIGG LQESSK EVLRVC+QMDELMEE K++
Sbjct:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDD 148
[Close]
BLAST of mRNA_M-pyrifera_M_contig9358.21617.1 vs. uniprot
Match: A0A7S3LZF2_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZF2_9STRA)

HSP 1 Score: 251 bits (640), Expect = 6.300e-79
Identity = 118/149 (79.19%), Postives = 139/149 (93.29%), Query Frame = 3 
Query:  162 TMINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCAQMDELMEEAKEE 608
            TMINF+LL+SRQGKTRL+KW+   +AKEK R VRE+T+TVL+R PKMCNF+EW+DKK++YKRYASLFFVAC+D++DNELI LE+IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGG LQE+SK EVLR+CA MDE+M+E+KEE
Sbjct:   17 TMINFILLVSRQGKTRLSKWFVQMTAKEKTRAVRELTATVLSRPPKMCNFIEWQDKKVIYKRYASLFFVACVDKNDNELIVLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQETSKVEVLRICAAMDEMMDESKEE 165
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BLAST of mRNA_M-pyrifera_M_contig9358.21617.1 vs. uniprot
Match: A0A812YG65_SYMMI (AP complex subunit sigma (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YG65_SYMMI)

HSP 1 Score: 245 bits (625), Expect = 7.130e-77
Identity = 118/168 (70.24%), Postives = 142/168 (84.52%), Query Frame = 3 
Query:  168 INFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCAQMDELMEEAKEEATNGSQGPSRRR*PTAPRGGG 671
            INF+LL+SRQGKTRLTKW+     K+K R+VRE+T  VL+R PK+CNF+EWRDKK+VYKRYASL+F+AC+D++DNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYI+DELFIGG LQE+SK EVLR+CA MDE+M+E+K+E T   +  + R     P G G
Sbjct:    1 INFILLVSRQGKTRLTKWFVQKEPKDKTRSVRELTGMVLSRPPKLCNFLEWRDKKVVYKRYASLYFIACVDKEDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYIMDELFIGGYLQETSKAEVLRICAAMDEMMDESKDEGTTPGRANAGR-----PGGSG 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig9358.21617.1 vs. uniprot
Match: F0Y8T1_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8T1_AURAN)

HSP 1 Score: 244 bits (622), Expect = 2.820e-76
Identity = 129/176 (73.30%), Postives = 142/176 (80.68%), Query Frame = 3 
Query:  165 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWR-DKKIVYKRYASLFFVAC--------------------IDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCAQMDELMEEAKEEATNGSQG 629
            MINFMLL+SRQGKTRLTKWY++YS KEKAR VRE  +TVLARAPKMCNF+EWR DKKIVYKRYASLFF+ C                    +D +DNELITLE IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFI GEL+ESSKKEVL +CAQMDE+M+E+KEE  NG  G
Sbjct:    1 MINFMLLVSRQGKTRLTKWYESYSTKEKARIVRE--ATVLARAPKMCNFIEWRADKKIVYKRYASLFFICCGDRRRERAPRRRKLKFLPAGVDSEDNELITLEMIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIAGELEESSKKEVLSICAQMDEMMDESKEEG-NGKGG 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig9358.21617.1 vs. uniprot
Match: A0A024THD2_9STRA (AP complex subunit sigma n=12 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024THD2_9STRA)

HSP 1 Score: 233 bits (595), Expect = 1.840e-72
Identity = 111/148 (75.00%), Postives = 130/148 (87.84%), Query Frame = 3 
Query:  165 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCAQMDELMEEAKEE 608
            MI+FMLL+SRQGKTRL+KWY T   K+KAR +RE+T+ VL R  K CNF+EW+D+KIVYKRYASL+FVACI +++NELITLE IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDEL IGG LQE SKKE+LRVC Q ++ MEE+KE+
Sbjct:    1 MIDFMLLVSRQGKTRLSKWYSTVPLKDKARIIREVTTLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEVIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCQQQEDFMEESKED 148
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9358.21617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBL7_ECTSI4.180e-10196.25AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S4A8C4_9STRA1.540e-8581.88AP complex subunit sigma n=1 Tax=Pelagomonas calce... [more]
A0A7S2SD76_9STRA1.410e-8478.18AP complex subunit sigma n=1 Tax=Rhizochromulina m... [more]
A0A835Z7C9_9STRA7.870e-8482.12AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2XUT6_9STRA1.130e-8182.12AP complex subunit sigma n=1 Tax=Fibrocapsa japoni... [more]
W7T3W8_9STRA7.560e-8181.08AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A7S3LZF2_9STRA6.300e-7979.19AP complex subunit sigma n=1 Tax=Spumella elongata... [more]
A0A812YG65_SYMMI7.130e-7770.24AP complex subunit sigma (Fragment) n=1 Tax=Symbio... [more]
F0Y8T1_AURAN2.820e-7673.30AP complex subunit sigma n=1 Tax=Aureococcus anoph... [more]
A0A024THD2_9STRA1.840e-7275.00AP complex subunit sigma n=12 Tax=Saprolegniaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9358contigM-pyrifera_M_contig9358:3391..7732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.1
Seed ortholog evalue2.3e-81
Seed eggNOG ortholog2880.D8LBL7
Preferred nameAP1S2
KEGG koko:K12394,ko:K12395
KEGG Pathwayko04142,map04142
Hectar predicted targeting categorymitochondrion
GOsGO:0000139,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0005886,GO:0005905,GO:0006605,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006897,GO:0006898,GO:0006928,GO:0006935,GO:0007034,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008104,GO:0008150,GO:0008306,GO:0008542,GO:0008565,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0012505,GO:0012506,GO:0012510,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019882,GO:0019884,GO:0019886,GO:0022008,GO:0030030,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030154,GO:0030182,GO:0030276,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031175,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033267,GO:0034613,GO:0036465,GO:0040011,GO:0042051,GO:0042147,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042886,GO:0042995,GO:0043005,GO:0043195,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043679,GO:0044306,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045176,GO:0045184,GO:0045202,GO:0045334,GO:0045444,GO:0046530,GO:0046907,GO:0048002,GO:0048193,GO:0048468,GO:0048475,GO:0048513,GO:0048592,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050690,GO:0050877,GO:0050885,GO:0050890,GO:0050896,GO:0050905,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060612,GO:0061448,GO:0061564,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090596,GO:0097458,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099504,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0150034
EggNOG free text desc.protein transport
EggNOG OGsCOG5030@1,KOG0934@2759
Ec32 ortholog descriptionClathrin assembly complex, small subunit
Ec32 orthologEc-27_003490.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons5
Model size1281
Cds size483
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.7111452-UTR-M-pyrifera_M_contig9358:3390..35541622816848.7111452-UTR-M-pyrifera_M_contig9358:3390..3554Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9358 3391..3554 +
1692278214.1828039-UTR-M-pyrifera_M_contig9358:3390..35541692278214.1828039-UTR-M-pyrifera_M_contig9358:3390..3554Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9358 3391..3554 +
1622816848.784318-UTR-M-pyrifera_M_contig9358:7098..77321622816848.784318-UTR-M-pyrifera_M_contig9358:7098..7732Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9358 7099..7732 +
1692278214.2577474-UTR-M-pyrifera_M_contig9358:7098..77321692278214.2577474-UTR-M-pyrifera_M_contig9358:7098..7732Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9358 7099..7732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.7255208-CDS-M-pyrifera_M_contig9358:3554..35571622816848.7255208-CDS-M-pyrifera_M_contig9358:3554..3557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9358 3555..3557 +
1692278214.1959746-CDS-M-pyrifera_M_contig9358:3554..35571692278214.1959746-CDS-M-pyrifera_M_contig9358:3554..3557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9358 3555..3557 +
1622816848.7376995-CDS-M-pyrifera_M_contig9358:4917..49921622816848.7376995-CDS-M-pyrifera_M_contig9358:4917..4992Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9358 4918..4992 +
1692278214.206009-CDS-M-pyrifera_M_contig9358:4917..49921692278214.206009-CDS-M-pyrifera_M_contig9358:4917..4992Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9358 4918..4992 +
1622816848.749388-CDS-M-pyrifera_M_contig9358:5307..54111622816848.749388-CDS-M-pyrifera_M_contig9358:5307..5411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9358 5308..5411 +
1692278214.220766-CDS-M-pyrifera_M_contig9358:5307..54111692278214.220766-CDS-M-pyrifera_M_contig9358:5307..5411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9358 5308..5411 +
1622816848.7616627-CDS-M-pyrifera_M_contig9358:6110..63001622816848.7616627-CDS-M-pyrifera_M_contig9358:6110..6300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9358 6111..6300 +
1692278214.2354808-CDS-M-pyrifera_M_contig9358:6110..63001692278214.2354808-CDS-M-pyrifera_M_contig9358:6110..6300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9358 6111..6300 +
1622816848.7732465-CDS-M-pyrifera_M_contig9358:6987..70981622816848.7732465-CDS-M-pyrifera_M_contig9358:6987..7098Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9358 6988..7098 +
1692278214.245463-CDS-M-pyrifera_M_contig9358:6987..70981692278214.245463-CDS-M-pyrifera_M_contig9358:6987..7098Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9358 6988..7098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9358.21617.1prot_M-pyrifera_M_contig9358.21617.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9358 3555..7098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9358.21617.1

>prot_M-pyrifera_M_contig9358.21617.1 ID=prot_M-pyrifera_M_contig9358.21617.1|Name=mRNA_M-pyrifera_M_contig9358.21617.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFV
EWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCE
LDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCAQMDELMEEAKEEAT
NGSQGPSRRR*
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mRNA from alignment at M-pyrifera_M_contig9358:3391..7732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9358.21617.1 ID=mRNA_M-pyrifera_M_contig9358.21617.1|Name=mRNA_M-pyrifera_M_contig9358.21617.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4342bp|location=Sequence derived from alignment at M-pyrifera_M_contig9358:3391..7732+ (Macrocystis pyrifera P11B4 male)
CGGGAATAGGCAAAAGGACGAACAAAAGGGGGGATACGGCACGCTGGAAA
TTGCGTTCACTTTTTGGAAACCTGTTTGCGTCCAAAGTTGTTCTGCTTCT
GTTCCCAGTACCCTGGGAGAAGGCTCCGCCGGAAGTCCTAGCTTGTCCAA
GGAGAAGCTACACAATGGTGAGTGCTGCGTGTATAGCGGTTTCTTCTAGA
TGGAACCAGACACGTTTTCTCCGACCTGGTATTCCGTGATTGCAAACAAG
GTCTGATGTGTTTCTATGTTATTGACAGCGCAACGACAACAACCGTCTTC
GACCCAAGGGCATGGTACTCCACCCAACACGTACCGCTGTACCAGGGGTG
CTCGTACTCCGTACGAAGTCGTATGATACGTCCTGTTTCTTAACCCATTT
AGCACCGCAGTCCCGATTTGGGGACAAACCATTCTAATTCTAAGTGATTT
GTCCCCCAAAATGGGACTGCGGTACTAAAATCTCGTCAATTTACCGAGAG
CGGTACTCATACACGTAGTGCTGTGGATATAACCCTCACACAACAAGCTT
GCTTTATACCATCTACCTGATATTGGTGACACTGCTGTGAGGTAGCGCAG
GAATGGTGAAAGTTGCTCAATCCCCAAAACCGCGAGGCGTTTTTGAGAAC
GGTGACTGAATGAAGACGCGACTGAGTGCAGATTTCTGCTGACAGCCGGT
CGCCGGTCCGGCAAATTTCTTGTGTAGATGTGCGTGCGTTGCGGCAAGCG
AAGGACTCGGTTGGGGGAGGGCAAGGCGCATCATCGTGGGTCTTAAGATC
ATATCATGCATACCGCTGGTAAAAAAAAACGTTCCTCACATCTCATAGCA
CTCTTGTGATGGGATAGGAATGCCAACGAGGACGTCGTACAGAAGAGGAC
GGGCTGGGTGAGGTACTTACGTATTTACGTTTGCGCGGCAAGTGTGAACC
GCCTGTAGAGCCTAACGCGGAAATACTTGAAGAACTACCGCAGCAGTATC
ATCGTCGTATACCAGGTACCTGGTGCCGGGGTTCCGTGTGGCACGTGGTA
GGCCGGGGGGACAGGGCGTCTATTCTTGGATTCCGTAATGACCTATTAAT
AGCAGTCTATCTAATTGCAGCACTCTTCGTAGTTGTTGTTATTGCTCATC
ATACTCTAAGCCATGGTCAACTATTAATAGACAGGCTCCAATATTTCGTG
CAGCAGCAGTATCAGGCGGCCAGTCGCGGGAACTCAGGAATGCCAGCCAG
GCTCGTGTATTATAGCTGGTAGCCAGCAGCACCATCGCCCGGCAAGGTAT
TACGTACTGGTACATAGCCTGTTTTTCTGGAAGGTATTCTGTCGATTCGT
GTGCTAAAACAGATAGGTCATGCCACCATTGGCCATCCGGTACGCTCGCT
CGCTTCTTCTTCTTCTTCTTCTTCTGCTCTCGTTTGCGGATGCCGAACGT
ACCGTAATTGACAAGCAGCCCGCGGGAAAAATGTGTTTAGTCCCCCCCCC
CTCTTTCCCGCCCGCACGCCCGCGCAGATCAACTTCATGCTACTCATCAG
CCGACAAGGCAAGACCCGCCTGACCAAGTGGTACCAAACCTACTCCGCCA
AGGTGAGACAGGCGTTTTCGCTGACGCTATCAATATAAGCTCTTTTTCCC
ACGCTGCGACCGTGCAGCTGCAATCGTGCAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGCATGTGGTTGTGTAATTTGGAGCGGAGCGAGTT
GCTATTGTACACCGCATCCTCCTACAATGTAGAGGGCATGATCAAGACAA
CGATGGTGCTGAAGATGAGGGCAGTAGTGATGATGAAGACGAATTGGACG
ATAACAGTGATGGTGATGATGATGACGATGACAGCGTTCCCTATTTTGCT
GTCTCGCCCAATCGTAGGAGAAAGCGCGCACGGTGCGGGAGATCACATCG
ACGGTCTTGGCGCGAGCCCCAAAGATGTGCAACTTCGTCGAGTGGCGCGA
TAAAAAAATCGTCTACAAGAGGTGAGCGGACGGATAGAGGAAAGCAAGAG
AGGGAGGTAACATTTATCGGGACCCAGGCGTCACGTTGTACCAGCTGCAG
CTCCGGCTGCTGATGTTGTCACTCGTGTGGCTGCTGGTGTGGTCGTTCAT
GGTTGGCGCGCGCGACATCAGCGCAGAGCCAACGGCAGCATGTGTGCGCT
TGCCGGCCTATTGTCGCAGCTCCTTTCTAGTGACCATGCTGCGCTTTTTT
TTCAAGATTGATTCCAAACATCACCAAGAAACCCGTTGAGCTTGGGTTGC
AATACTTACACCGCATGAGTAATGGGACAAGGTTCAAGGCATGGATCATT
CATGTTGTGCACCTTCCTCTGTGTGTGGCACGCAGCACACACCGTACCTT
GACCTGGGCGATGCTCATGCGCGATCGCGCGCAGGTGGTAATTTCGGCCA
CGGGTATACGCTGTGAAGAATATACAACCAGAGAGTACATATATAGCTAC
TGTAGCTCTGCCTGGCTGTTTCTTGACCCCTTCCCGTATCGCGAGCTACT
AACTGACTAACTGGTTTACTGTACCACGCGCCGTTCTCTGTTACGTTCTG
CACCCCGTTCTTTCTTGCAATACCGTGCATCTCGGTTTCCCCGTGCGGCG
ACGACGGTGGGGGGTGGATCGGGATCGGGCGTGAAAAAAATACACACACG
CATACACACACAAAAAATAGGTACGCATCCCTGTTTTTCGTGGCGTGCAT
AGACCAGGACGACAACGAGCTCATCACCCTGGAGAAGATCCACCTGTTCG
TGGAGGTGCTCGACCGTTACTTCGGCAACGTGTGCGAGTTGGACATCATC
TTCAACTTCCACAAGGCGTACTACATCTTGGACGAGCTCTTCATCGGCGG
GGAGCTCCAGGTCAGCCCCTCCCCCGCCCCCTACCCCCTGACGCATGCTA
CAGTAGGGGTGCGCCTACTTTTTTCTTTGGGCTCCTCACCTATATATCTC
TTTTAGGACTGCAGTCCCGATTTGGGTACAAACTACTGAGAATATGAGTG
GTTTGTTCCCAAAACGGGATTGCATTCCCAAAAGGGTTGAGGTCTTTACC
TCACCCCCAAATTGGCTTTTAGAAGAAAAAAAATGAGGACTTCTTTCTTC
ACCTCACCGACAAACTGATTTTTGGAATAAAATCAAAAGTACAAGCCGGT
GGTCTATAGGTAGGTACACAAGCAGTAACAGGTGAAAACAGAAACGTTGT
ACCAACAGATAGGCAACCCCTATTGGGGGGAGCTCCTTAGCCGAAGAGCC
TCGGCAACCATGAAGTGTTTTTGCCCTAAAATGCTACCCTTACTGTAGCA
CGCGTCCCCGGTCCACCCCCCCAACCCGCCTCCGTCTTGGCTCCTGTTTT
CCGTGGCGAAAAATGACCCACCGAAGCTCCCTCTTATCTCCTGTTTTTCC
GTGGCGAATTTTGGCCTTTTGCCGATCCGAGTACACAGCAGCACTTTCCT
CCATTTCTTTTAGGTGTATGTATTGCACATAACTCCTTTTTTCGTTTTTG
CATTTTTTTTCGTTATTCCCTCCCTTCGCCCGCCCGCCCGTCTCCAGGAA
AGCTCGAAGAAGGAAGTGCTGCGAGTGTGCGCGCAGATGGACGAGCTGAT
GGAGGAGGCCAAGGAGGAAGCCACCAACGGCAGCCAGGGACCCTCCCGTC
GGCGGTGACCTACCGCTCCTCGCGGCGGCGGCTTTTCGGTTTTTGTTCTC
CGGCCTTATGCTGTGCTTGTGTTCCACCGTCATCATCGTCATAATCATCA
TTGGAGCTTTTTTCTCTCTGCAAGTGTGTCTGTCGGCCTGTCCGTCGGTC
GGTCGGTCGGTCTTTCTTTTGGCTTGTTTATGTTCTGATCGTGCCTGCCG
TCTTGGCTCGAGTCGCATCCCACTAAGTTGCAGCGTAGAGCATCCTCTGC
GTGCCGGACAAGATGCTACGTTACGTGCAGGATGCCACTATCCGTGAAGC
AACAGAAACGGCTGAATGCTGCCTGCACCTTGAAGCAACCAAAAAAATAG
TTGACTGCCGCGTTTGCCGTCTACGGCAGCAGTAGCTTCCCCCGCTCGTC
GTAACCCGAACGCTGCTGGGGCGAGATGGGCACCCCCCTTGCCTCTGGCG
GCTTGACGTATTACCCGGCACAGCAAGCTTGAGGTTTTCGGATAGTTCCG
CGGAAAGGGCAAGCAGACAGACACCCCCCTACCTGAGGCGTTGCTGATGC
GGGAGATGGTGTGTTCGCATCATGAATTCGGGTTGGACGGCGACGGTTGT
TGAGACACGCATAGAAAGGACGCGGGGGAAAGACCGGGTGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9358:3391..7732+

>mRNA_M-pyrifera_M_contig9358.21617.1 ID=mRNA_M-pyrifera_M_contig9358.21617.1|Name=mRNA_M-pyrifera_M_contig9358.21617.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig9358:3391..7732+ (Macrocystis pyrifera P11B4 male)
ATGATGATCAACTTCATGCTACTCATCAGCCGACAAGGCAAGACCCGCCT
GACCAAGTGGTACCAAACCTACTCCGCCAAGATCAACTTCATGCTACTCA
TCAGCCGACAAGGCAAGACCCGCCTGACCAAGTGGTACCAAACCTACTCC
GCCAAGGAGAAAGCGCGCACGGTGCGGGAGATCACATCGACGGTCTTGGC
GCGAGCCCCAAAGATGTGCAACTTCGTCGAGTGGCGCGATAAAAAAATCG
TCTACAAGAGGAGAAAGCGCGCACGGTGCGGGAGATCACATCGACGGTCT
TGGCGCGAGCCCCAAAGATGTGCAACTTCGTCGAGTGGCGCGATAAAAAA
ATCGTCTACAAGAGGTACGCATCCCTGTTTTTCGTGGCGTGCATAGACCA
GGACGACAACGAGCTCATCACCCTGGAGAAGATCCACCTGTTCGTGGAGG
TGCTCGACCGTTACTTCGGCAACGTGTGCGAGTTGGACATCATCTTCAAC
TTCCACAAGGCGTACTACATCTTGGACGAGCTCTTCATCGGCGGGGAGCT
CCAGGTACGCATCCCTGTTTTTCGTGGCGTGCATAGACCAGGACGACAAC
GAGCTCATCACCCTGGAGAAGATCCACCTGTTCGTGGAGGTGCTCGACCG
TTACTTCGGCAACGTGTGCGAGTTGGACATCATCTTCAACTTCCACAAGG
CGTACTACATCTTGGACGAGCTCTTCATCGGCGGGGAGCTCCAGGAAAGC
TCGAAGAAGGAAGTGCTGCGAGTGTGCGCGCAGATGGACGAGCTGATGGA
GGAGGCCAAGGAGGAAGCCACCAACGGCAGCCAGGGACCCTCCCGTCGGC
GGTGAGAAAGCTCGAAGAAGGAAGTGCTGCGAGTGTGCGCGCAGATGGAC
GAGCTGATGGAGGAGGCCAAGGAGGAAGCCACCAACGGCAGCCAGGGACC
CTCCCGTCGGCGGTGA
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