mRNA_M-pyrifera_M_contig93532.21601.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93532.21601.1
Unique NamemRNA_M-pyrifera_M_contig93532.21601.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93532.21601.1 vs. uniprot
Match: A0A2D6PDY9_9ACTN (Deaminase n=2 Tax=root TaxID=1 RepID=A0A2D6PDY9_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 1.690e-19
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 TTVFMTSMDDYATMNSVYVELFGDHRPARSAVAVKELPLGALIEIEALAYTG 156
            TTVF+  MDDYA MN++Y + FGDHRPARSAVAV  LPLGAL+EIEA+A+TG
Sbjct:   67 TTVFLVDMDDYAAMNAIYCDAFGDHRPARSAVAVAALPLGALVEIEAIAHTG 118
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BLAST of mRNA_M-pyrifera_M_contig93532.21601.1 vs. uniprot
Match: A0A7Y2DD53_9ACTN (Deaminase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DD53_9ACTN)

HSP 1 Score: 82.8 bits (203), Expect = 3.150e-19
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 TTVFMTSMDDYATMNSVYVELFGDHRPARSAVAVKELPLGALIEIEALAYTG 156
            TTVF+T MDDYA MN++Y+E FGDHRPARSAVAV  LPLGAL+EIEA+A  G
Sbjct:   64 TTVFLTDMDDYAAMNTIYLEHFGDHRPARSAVAVAALPLGALVEIEAVARAG 115
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BLAST of mRNA_M-pyrifera_M_contig93532.21601.1 vs. uniprot
Match: A0A354B846_9ACTN (Deaminase n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A354B846_9ACTN)

HSP 1 Score: 81.3 bits (199), Expect = 1.240e-18
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 TTVFMTSMDDYATMNSVYVELFGDHRPARSAVAVKELPLGALIEIEALA 147
            TTVF+T M+DYA MN +Y+E FGDHRPARSAVAVKELPLGA IEIEA+A
Sbjct:   64 TTVFLTDMNDYAAMNEIYMEEFGDHRPARSAVAVKELPLGAKIEIEAIA 112
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BLAST of mRNA_M-pyrifera_M_contig93532.21601.1 vs. uniprot
Match: A0A2E0ZRJ2_9ACTN (Deaminase n=2 Tax=root TaxID=1 RepID=A0A2E0ZRJ2_9ACTN)

HSP 1 Score: 80.9 bits (198), Expect = 2.230e-18
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    4 TVFMTSMDDYATMNSVYVELFGDHRPARSAVAVKELPLGALIEIEALAYTG 156
            TVF+  MDDYA MN++Y E FGDHRPARSAVAV  LPLGA +EIEA+A+TG
Sbjct:   73 TVFLVDMDDYAAMNAIYCEAFGDHRPARSAVAVAALPLGARVEIEAIAHTG 123
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BLAST of mRNA_M-pyrifera_M_contig93532.21601.1 vs. uniprot
Match: A0A5Q2RNL6_9ACTN (Deaminase n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RNL6_9ACTN)

HSP 1 Score: 80.1 bits (196), Expect = 3.740e-18
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 TTVFMTSMDDYATMNSVYVELFGDHRPARSAVAVKELPLGALIEIEALAYTG 156
            TTVF+  M DYA MN VY+E FGDHRPARSA+ V ELP+GAL+EIEA A+TG
Sbjct:   64 TTVFLRHMSDYALMNEVYLEYFGDHRPARSAIGVAELPIGALVEIEAWAHTG 115
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BLAST of mRNA_M-pyrifera_M_contig93532.21601.1 vs. uniprot
Match: A0A538JNV3_9ACTN (RidA family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JNV3_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 1.630e-17
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 TTVFMTSMDDYATMNSVYVELFGDHRPARSAVAVKELPLGALIEIEALAY 150
            TTVF+TS+DDYA MN  Y E FGDHRPARSAVAV  LP+GAL+E+EA A+
Sbjct:   64 TTVFLTSIDDYAAMNETYTETFGDHRPARSAVAVAALPIGALVEVEAWAF 113
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BLAST of mRNA_M-pyrifera_M_contig93532.21601.1 vs. uniprot
Match: A0A538BDW3_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538BDW3_9ACTN)

HSP 1 Score: 77.8 bits (190), Expect = 2.960e-17
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 TTVFMTSMDDYATMNSVYVELFGDHRPARSAVAVKELPLGALIEIEALAYTG 156
            TTVF+  +DDYA MN  Y++ FGDHRPAR+AVAV  LPLGAL+E+EA A+TG
Sbjct:   64 TTVFLRHIDDYAVMNEAYIQSFGDHRPARAAVAVAGLPLGALVEVEAWAFTG 115
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BLAST of mRNA_M-pyrifera_M_contig93532.21601.1 vs. uniprot
Match: A0A7Y3LMT7_9ACTN (RidA family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y3LMT7_9ACTN)

HSP 1 Score: 77.4 bits (189), Expect = 4.100e-17
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 TTVFMTSMDDYATMNSVYVELFGDHRPARSAVAVKELPLGALIEIEALAY 150
            TTVF+++MD+Y+ MN+ Y+E FGDHRPARSA+ V  LPLGAL+EIEA+AY
Sbjct:   62 TTVFLSNMDNYSEMNTAYMEAFGDHRPARSAIGVSALPLGALVEIEAIAY 111
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BLAST of mRNA_M-pyrifera_M_contig93532.21601.1 vs. uniprot
Match: A0A7V8WY26_9ACTN (Deaminase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8WY26_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 6.270e-17
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 TTVFMTSMDDYATMNSVYVELFGDHRPARSAVAVKELPLGALIEIEALAY 150
            TTVF+  M DY  MN +YVE FGDHRPARSAVAV ELPLGAL+EIEA A+
Sbjct:   64 TTVFLRHMPDYVRMNDIYVEAFGDHRPARSAVAVAELPLGALVEIEAWAH 113
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BLAST of mRNA_M-pyrifera_M_contig93532.21601.1 vs. uniprot
Match: A0A2E5HZP8_9ACTN (Reactive intermediate/imine deaminase n=2 Tax=root TaxID=1 RepID=A0A2E5HZP8_9ACTN)

HSP 1 Score: 75.9 bits (185), Expect = 1.700e-16
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    4 TVFMTSMDDYATMNSVYVELFGDHRPARSAVAVKELPLGALIEIEALAYTG 156
            TV MT +D++A +N+ Y E+FGDHRP+RSAVAVK LPLGAL+EIEA+A+T 
Sbjct:   64 TVXMTDIDNFAVVNATYAEVFGDHRPSRSAVAVKALPLGALVEIEAIAHTS 114
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93532.21601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6PDY9_9ACTN1.690e-1973.08Deaminase n=2 Tax=root TaxID=1 RepID=A0A2D6PDY9_9A... [more]
A0A7Y2DD53_9ACTN3.150e-1975.00Deaminase n=1 Tax=Acidimicrobiales bacterium TaxID... [more]
A0A354B846_9ACTN1.240e-1879.59Deaminase n=5 Tax=Acidimicrobiaceae bacterium TaxI... [more]
A0A2E0ZRJ2_9ACTN2.230e-1872.55Deaminase n=2 Tax=root TaxID=1 RepID=A0A2E0ZRJ2_9A... [more]
A0A5Q2RNL6_9ACTN3.740e-1871.15Deaminase n=1 Tax=Actinomarinicola tropica TaxID=2... [more]
A0A538JNV3_9ACTN1.630e-1772.00RidA family protein n=1 Tax=Actinomycetia bacteriu... [more]
A0A538BDW3_9ACTN2.960e-1767.31Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A7Y3LMT7_9ACTN4.100e-1768.00RidA family protein n=1 Tax=Acidimicrobiales bacte... [more]
A0A7V8WY26_9ACTN6.270e-1774.00Deaminase n=1 Tax=Acidimicrobiia bacterium TaxID=2... [more]
A0A2E5HZP8_9ACTN1.700e-1666.67Reactive intermediate/imine deaminase n=2 Tax=root... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93532contigM-pyrifera_M_contig93532:2..160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog1229780.BN381_100104
KEGG rclassRC03275,RC03354
KEGG koko:K09022
KEGG ReactionR11098,R11099
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG0251@1,COG0251@2
EC3.5.99.10
COG Functional cat.J
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size159
Cds size147
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.0798767-UTR-M-pyrifera_M_contig93532:1..131622816848.0798767-UTR-M-pyrifera_M_contig93532:1..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93532 2..13 +
1692278213.8295975-UTR-M-pyrifera_M_contig93532:1..131692278213.8295975-UTR-M-pyrifera_M_contig93532:1..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93532 2..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.0922098-CDS-M-pyrifera_M_contig93532:13..1601622816848.0922098-CDS-M-pyrifera_M_contig93532:13..160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93532 14..160 +
1692278213.8420336-CDS-M-pyrifera_M_contig93532:13..1601692278213.8420336-CDS-M-pyrifera_M_contig93532:13..160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93532 14..160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93532.21601.1prot_M-pyrifera_M_contig93532.21601.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93532 14..160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93532.21601.1

>prot_M-pyrifera_M_contig93532.21601.1 ID=prot_M-pyrifera_M_contig93532.21601.1|Name=mRNA_M-pyrifera_M_contig93532.21601.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
MTSMDDYATMNSVYVELFGDHRPARSAVAVKELPLGALIEIEALAYTG*
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mRNA from alignment at M-pyrifera_M_contig93532:2..160+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93532.21601.1 ID=mRNA_M-pyrifera_M_contig93532.21601.1|Name=mRNA_M-pyrifera_M_contig93532.21601.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig93532:2..160+ (Macrocystis pyrifera P11B4 male)
ACCACGGTCTTCATGACCTCGATGGACGACTACGCCACCATGAACTCGGT
GTATGTCGAGCTCTTCGGTGATCATCGTCCGGCCCGGTCTGCGGTCGCGG
TCAAGGAACTGCCACTCGGCGCCCTGATCGAGATCGAAGCGCTCGCCTAC
ACCGGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93532:2..160+

>mRNA_M-pyrifera_M_contig93532.21601.1 ID=mRNA_M-pyrifera_M_contig93532.21601.1|Name=mRNA_M-pyrifera_M_contig93532.21601.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig93532:2..160+ (Macrocystis pyrifera P11B4 male)
ATGACCTCGATGGACGACTACGCCACCATGAACTCGGTGTATGTCGAGCT
CTTCGGTGATCATCGTCCGGCCCGGTCTGCGGTCGCGGTCAAGGAACTGC
CACTCGGCGCCCTGATCGAGATCGAAGCGCTCGCCTACACCGGTTGAATG
ACCTCGATGGACGACTACGCCACCATGAACTCGGTGTATGTCGAGCTCTT
CGGTGATCATCGTCCGGCCCGGTCTGCGGTCGCGGTCAAGGAACTGCCAC
TCGGCGCCCTGATCGAGATCGAAGCGCTCGCCTACACCGGTTGA
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