mRNA_M-pyrifera_M_contig93489.21592.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93489.21592.1
Unique NamemRNA_M-pyrifera_M_contig93489.21592.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93489.21592.1 vs. uniprot
Match: A0A2E7KFL9_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFL9_9PLAN)

HSP 1 Score: 432 bits (1111), Expect = 2.040e-152
Identity = 208/225 (92.44%), Postives = 214/225 (95.11%), Query Frame = 1
Query:    1 MNFHQRLDCREFREAGGHTGPHPTVGVGVLVRDCLSALCPPVAYVIPDDFLEYPMMPDLKWQNLMMIGTVGQADRWYPLIDFLIRKFVVMKLNFPEGDVGVKTKFCPDVAGFCPGVSGILSSSGRGVSWFALNIGGRTFCIGSECSGGNRVKSGGGSGGCGALVVSLPVGVDPPRARARGEVAYDSGGMDQGESVQQGVREVQWGGFQVGWEVELFSKGEVLRSV 675
            MNFHQRLDCREFREAGGHTGPHPTVGVGVLVRDC SALCPPVAYVIPDDFLEYPMMPD KWQ LMMI TVGQADRW+PLIDFL RKF+VMKLNF E DVGVKT+FCPDVAGFCPGVSGILSSSGRGVSWFALNIG RTF IGSECSGGN VKSGGGSGGCGALVV++PVGVDPPRARARGEVAYDSGG+DQGESVQQGVREVQW GFQVGWEVELFSKGEVLRSV
Sbjct:    1 MNFHQRLDCREFREAGGHTGPHPTVGVGVLVRDCRSALCPPVAYVIPDDFLEYPMMPDSKWQTLMMIDTVGQADRWHPLIDFLFRKFLVMKLNFAERDVGVKTEFCPDVAGFCPGVSGILSSSGRGVSWFALNIGRRTFRIGSECSGGNGVKSGGGSGGCGALVVTVPVGVDPPRARARGEVAYDSGGVDQGESVQQGVREVQWRGFQVGWEVELFSKGEVLRSV 225          
BLAST of mRNA_M-pyrifera_M_contig93489.21592.1 vs. uniprot
Match: A0A517W6K6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517W6K6_9PLAN)

HSP 1 Score: 232 bits (591), Expect = 3.420e-74
Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = 1
Query:  241 DFLIRKFVVMKLNFPEGDVGVKTKFCPDVAGFCPGVSGILSSSGRGVSWFALNIGGRTFCIGSECSGGNRVKSGGGSGGCGALVVSLPVGVDPPRARARGEVAYDSGGMDQGESVQQGVREVQWGGFQVGWEVELFSKGEVLRSV 675
            D +   F+ + ++  E   GVKTKFCPDVAGFCP VS ILSSSGRGVS FALNIGGRTF IGS+CSGGNRVKSGGGSGGCGALVV++PVGVDPPRARARGEVAYDSGG+DQGESVQ+GVREVQW GFQVGW++ELFSKGEVLRSV
Sbjct:   20 DVVSNYFIHLDVDSVERQQGVKTKFCPDVAGFCPRVSWILSSSGRGVSRFALNIGGRTFRIGSDCSGGNRVKSGGGSGGCGALVVTVPVGVDPPRARARGEVAYDSGGVDQGESVQRGVREVQWRGFQVGWDIELFSKGEVLRSV 164          
BLAST of mRNA_M-pyrifera_M_contig93489.21592.1 vs. uniprot
Match: A0A518A0R3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A0R3_9PLAN)

HSP 1 Score: 114 bits (284), Expect = 2.770e-28
Identity = 76/143 (53.15%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  196 MIGTVGQADRWYPLIDFLIRKFVVMKLNFPEGDVGVKTKFCPDVAGFCPGVSGILSSSGRGV-----SWFALNIGGRTFCIGSECSGGNRVKSGGGSGGCGALVVSLPVGVDPPRARARGEVAYDSGGMDQGESVQQGVREVQ 609
            MI TVGQADRW+PLI+ LIRK  +MK+NF E  VGVKT  CP VAGFCP ++GILS   R V      W A    G T    S  SG N VK  G SG   ++V  +      PRARAR    YDS   +QGESVQ GVREVQ
Sbjct:    1 MISTVGQADRWHPLINLLIRKVSMMKINFAERRVGVKTDLCPFVAGFCPVLAGILS---RFVLVFVPMWPASK--GETGRTDSLLSGENSVKIDGDSGVVSSVVPDMQGTEHRPRARARFGPTYDSECANQGESVQVGVREVQ 138          
BLAST of mRNA_M-pyrifera_M_contig93489.21592.1 vs. uniprot
Match: A0A517PIH5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PIH5_9PLAN)

HSP 1 Score: 109 bits (273), Expect = 2.300e-26
Identity = 58/81 (71.60%), Postives = 62/81 (76.54%), Query Frame = -2
Query:  297 PLARARGGSTPTGKLTTSAPHPPEPPPLFTLFPPEHSEPMQNVLPPMFRANQDTPRPDEDKIPDTPGQNPATSGQNFVLTP 539
            PLARARG    TG   TSAP PPE  PLFTLFP E  EPM+NVLP +F A+QD PRP +DKI DTPGQNPATSGQN VLTP
Sbjct:    4 PLARARGRLASTGTFNTSAPFPPETTPLFTLFPLEQYEPMRNVLPTLFTAHQDKPRPHQDKIHDTPGQNPATSGQNSVLTP 84          
BLAST of mRNA_M-pyrifera_M_contig93489.21592.1 vs. uniprot
Match: A0A517WKL7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WKL7_9PLAN)

HSP 1 Score: 110 bits (274), Expect = 2.030e-25
Identity = 63/110 (57.27%), Postives = 76/110 (69.09%), Query Frame = 1
Query:  286 EGDVGVKTKFCPDVAGFCPGVSGILSSSGRGVSWFALNIGGRTFCIGSECSGGNRVKSGGGSGGCGALVVSLPVGVDPPRARARGEVAYDSGGMDQGESVQQGVREVQWG 615
            EG  GVKT+FCP+VA FCPGVSGILS SGRG+S  AL  G R F  G++CSG  +VKS G  G    +V+ +    D PRARAR E+ YDS G+DQG+SVQ  V + QWG
Sbjct:   29 EGRGGVKTEFCPNVARFCPGVSGILSHSGRGLSASALPWG-RLFRRGAQCSGEKQVKSEGVGGADVTVVLEMQCSEDAPRARARRELTYDSVGVDQGQSVQAVVDDFQWG 137          
BLAST of mRNA_M-pyrifera_M_contig93489.21592.1 vs. uniprot
Match: A0A517WEW3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WEW3_9PLAN)

HSP 1 Score: 100 bits (250), Expect = 2.210e-23
Identity = 59/112 (52.68%), Postives = 69/112 (61.61%), Query Frame = 1
Query:  277 NFPEGDVGVKTKFCPDVAGFCPGVSGILSSSGRGVSWFALNIGGRTFCIGSECSGGNRVKSGGGSGGCGALVVSLPVGVDPPRARARGEVAYDSGGMDQGESVQQGVREVQW 612
            +F EG +GVKT+FCPDVAGFCPGVS ILS S R +SW ALNIGGRT    S CS    VK+   SG   ++V  +PV  + PRARA  E  Y S G DQ +  Q      QW
Sbjct:   28 DFVEGQLGVKTEFCPDVAGFCPGVSRILSLSDRNLSWSALNIGGRTLRTSSICSTEKPVKNACDSGESESVVRPVPVHGNLPRARATFETGYGSTGADQVQFEQFHSGSAQW 139          
BLAST of mRNA_M-pyrifera_M_contig93489.21592.1 vs. uniprot
Match: A0A517PQN8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PQN8_9PLAN)

HSP 1 Score: 101 bits (251), Expect = 2.740e-23
Identity = 59/115 (51.30%), Postives = 71/115 (61.74%), Query Frame = 1
Query:  268 MKLNFPEGDVGVKTKFCPDVAGFCPGVSGILSSSGRGVSWFALNIGGRTFCIGSECSGGNRVKSGGGSGGCGALVVSLPVGVDPPRARARGEVAYDSGGMDQGESVQQGVREVQW 612
            ++++F EG +GVKT+FCPDVAGFCPGVS ILS S R +SW ALNIGGRT    S CS    VK+   SG   ++V  +PV  D PRARA  E  Y S G  Q +  Q      QW
Sbjct:   46 VEIDFVEGQLGVKTEFCPDVAGFCPGVSRILSLSDRNLSWSALNIGGRTLRTSSICSTEKPVKNVRDSGESESVVRPVPVHDDLPRARATFETGYGSTGAVQVQFEQSHSGSAQW 160          
BLAST of mRNA_M-pyrifera_M_contig93489.21592.1 vs. uniprot
Match: A0A517PWS3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PWS3_9PLAN)

HSP 1 Score: 101 bits (252), Expect = 1.790e-22
Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  286 EGDVGVKTKFCPDVAGFCPGVSGILSSSGRGVSWFALNIGGRTFCIGSECSGGNRVKSGGGSGGCGALVVSLPVGVDPPRARARGEVAYDSGGMDQGESVQQGVREVQW 612
            EG  GVKT+FCP+VAGFCPGVSGILS SGRG+S  AL  G R F  G++CSG  +VKS G  G    +V  +    D PRARAR E  YD  G+ QG+SVQ  V + QW
Sbjct:   29 EGHGGVKTEFCPNVAGFCPGVSGILSQSGRGLSASALPCG-RLFRRGAQCSGEKQVKSAGVGGADVRVVREMQCSEDAPRARARWEPGYDLEGVVQGQSVQA-VVDFQW 135          
BLAST of mRNA_M-pyrifera_M_contig93489.21592.1 vs. uniprot
Match: A0A518ADE9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ADE9_9PLAN)

HSP 1 Score: 92.0 bits (227), Expect = 8.560e-20
Identity = 59/145 (40.69%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  160 PMMPDLKWQNLMMIGTVGQADRWYPLIDFLIRKFVVMKL---NFPEGDVGVKTKFCPDVAGFCPGVSGILSSSGRGVSWFALNIGGRTFCIGSECSGGNRVKSGGGSGGCGALVVSLPVGVDPPRARARGEVAYDSGGMDQGESV 585
            P++  + W  + ++G+      W+       ++   M +   N  EG VGVKT FCPDVAG CP    I+S  G  +S F L  G RTF  GS+CSGG RVK  G SG   +LV  +PV  +PPRARA     Y+ G  DQ + V
Sbjct:    2 PLVSFIVWNRVFVMGSFTDFADWFHHCRASRQRHTSMSIDERNSVEGRVGVKTNFCPDVAGLCPVFVLIVSIFGPILSRFDLTRG-RTFRTGSKCSGGKRVKIDGISGAVASLVRCVPVLANPPRARATFGAEYEWGAADQVQCV 145          
BLAST of mRNA_M-pyrifera_M_contig93489.21592.1 vs. uniprot
Match: A0A517W616_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517W616_9PLAN)

HSP 1 Score: 89.7 bits (221), Expect = 1.540e-19
Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  274 LNFPEGDVGVKTKFCPDVAGFCPGVSGILSSSGRGVSWFALNIGGRTFCIGSECSGGNRVKSGGGSGGCGALVVSLPVGVDPPRARARGE 543
            L F E   GVKT+FCP VAGFCPGVS  LS   R +SWFA+N  G TF + S  S  N VKSG GSG   ++V  +PV  D PRARAR E
Sbjct:    2 LKFVEWREGVKTEFCPSVAGFCPGVSRFLSLCDRSLSWFAVNNKGGTFRMSSVYSSENLVKSGVGSGAVASVVSGVPVHADLPRARARRE 91          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93489.21592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KFL9_9PLAN2.040e-15292.44Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517W6K6_9PLAN3.420e-7480.69Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A518A0R3_9PLAN2.770e-2853.15Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A517PIH5_9PLAN2.300e-2671.60Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517WKL7_9PLAN2.030e-2557.27Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517WEW3_9PLAN2.210e-2352.68Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517PQN8_9PLAN2.740e-2351.30Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517PWS3_9PLAN1.790e-2255.96Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A518ADE9_9PLAN8.560e-2040.69Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A517W616_9PLAN1.540e-1956.67Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93489contigM-pyrifera_M_contig93489:78..752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size675
Cds size675
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.592889-CDS-M-pyrifera_M_contig93489:77..7521622816847.592889-CDS-M-pyrifera_M_contig93489:77..752Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93489 78..752 +
1692278213.529459-CDS-M-pyrifera_M_contig93489:77..7521692278213.529459-CDS-M-pyrifera_M_contig93489:77..752Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93489 78..752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93489.21592.1prot_M-pyrifera_M_contig93489.21592.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93489 78..752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93489.21592.1

>prot_M-pyrifera_M_contig93489.21592.1 ID=prot_M-pyrifera_M_contig93489.21592.1|Name=mRNA_M-pyrifera_M_contig93489.21592.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=225bp
MNFHQRLDCREFREAGGHTGPHPTVGVGVLVRDCLSALCPPVAYVIPDDF
LEYPMMPDLKWQNLMMIGTVGQADRWYPLIDFLIRKFVVMKLNFPEGDVG
VKTKFCPDVAGFCPGVSGILSSSGRGVSWFALNIGGRTFCIGSECSGGNR
VKSGGGSGGCGALVVSLPVGVDPPRARARGEVAYDSGGMDQGESVQQGVR
EVQWGGFQVGWEVELFSKGEVLRSV
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mRNA from alignment at M-pyrifera_M_contig93489:78..752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93489.21592.1 ID=mRNA_M-pyrifera_M_contig93489.21592.1|Name=mRNA_M-pyrifera_M_contig93489.21592.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=675bp|location=Sequence derived from alignment at M-pyrifera_M_contig93489:78..752+ (Macrocystis pyrifera P11B4 male)
ATGAATTTCCATCAGAGGTTGGACTGTAGAGAGTTTCGAGAGGCGGGCGG CCACACAGGGCCGCACCCTACGGTGGGAGTGGGTGTGCTGGTTCGAGATT GTCTGTCTGCGCTGTGTCCTCCTGTTGCGTATGTAATCCCGGATGATTTT CTAGAGTACCCGATGATGCCTGATCTAAAGTGGCAGAACCTGATGATGAT CGGTACTGTCGGACAAGCCGACAGATGGTATCCGTTGATCGATTTCTTAA TTCGAAAGTTCGTAGTGATGAAACTGAATTTTCCGGAAGGGGACGTGGGC GTCAAGACAAAATTTTGTCCCGATGTGGCCGGATTTTGTCCTGGTGTGTC CGGGATTTTGTCCTCGTCTGGCCGGGGTGTGTCCTGGTTTGCCCTGAACA TTGGGGGGAGAACATTTTGCATTGGTTCAGAATGTTCTGGTGGAAACAGG GTGAAAAGCGGTGGAGGTTCAGGTGGATGTGGGGCACTGGTGGTGAGTTT GCCGGTGGGCGTCGACCCGCCTCGCGCGCGAGCCAGAGGGGAAGTAGCTT ACGATTCGGGAGGCATGGATCAAGGGGAGTCTGTTCAGCAGGGAGTGCGG GAGGTTCAGTGGGGAGGTTTTCAGGTGGGGTGGGAAGTCGAATTATTTTC AAAAGGAGAAGTTCTGAGGAGCGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93489:78..752+

>mRNA_M-pyrifera_M_contig93489.21592.1 ID=mRNA_M-pyrifera_M_contig93489.21592.1|Name=mRNA_M-pyrifera_M_contig93489.21592.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1350bp|location=Sequence derived from alignment at M-pyrifera_M_contig93489:78..752+ (Macrocystis pyrifera P11B4 male)
ATGAATTTCCATCAGAGGTTGGACTGTAGAGAGTTTCGAGAGGCGGGCGG
CCACACAGGGCCGCACCCTACGGTGGGAGTGGGTGTGCTGGTTCGAGATT
GTCTGTCTGCGCTGTGTCCTCCTGTTGCGTATGTAATCCCGGATGATTTT
CTAGAGTACCCGATGATGCCTGATCTAAAGTGGCAGAACCTGATGATGAT
CGGTACTGTCGGACAAGCCGACAGATGGTATCCGTTGATCGATTTCTTAA
TTCGAAAGTTCGTAGTGATGAAACTGAATTTTCCGGAAGGGGACGTGGGC
GTCAAGACAAAATTTTGTCCCGATGTGGCCGGATTTTGTCCTGGTGTGTC
CGGGATTTTGTCCTCGTCTGGCCGGGGTGTGTCCTGGTTTGCCCTGAACA
TTGGGGGGAGAACATTTTGCATTGGTTCAGAATGTTCTGGTGGAAACAGG
GTGAAAAGCGGTGGAGGTTCAGGTGGATGTGGGGCACTGGTGGTGAGTTT
GCCGGTGGGCGTCGACCCGCCTCGCGCGCGAGCCAGAGGGGAAGTAGCTT
ACGATTCGGGAGGCATGGATCAAGGGGAGTCTGTTCAGCAGGGAGTGCGG
GAGGTTCAGTGGGGAGGTTTTCAGGTGGGGTGGGAAGTCGAATTATTTTC
AAAAGGAGAAGTTCTGAGGAGCGTTATGAATTTCCATCAGAGGTTGGACT
GTAGAGAGTTTCGAGAGGCGGGCGGCCACACAGGGCCGCACCCTACGGTG
GGAGTGGGTGTGCTGGTTCGAGATTGTCTGTCTGCGCTGTGTCCTCCTGT
TGCGTATGTAATCCCGGATGATTTTCTAGAGTACCCGATGATGCCTGATC
TAAAGTGGCAGAACCTGATGATGATCGGTACTGTCGGACAAGCCGACAGA
TGGTATCCGTTGATCGATTTCTTAATTCGAAAGTTCGTAGTGATGAAACT
GAATTTTCCGGAAGGGGACGTGGGCGTCAAGACAAAATTTTGTCCCGATG
TGGCCGGATTTTGTCCTGGTGTGTCCGGGATTTTGTCCTCGTCTGGCCGG
GGTGTGTCCTGGTTTGCCCTGAACATTGGGGGGAGAACATTTTGCATTGG
TTCAGAATGTTCTGGTGGAAACAGGGTGAAAAGCGGTGGAGGTTCAGGTG
GATGTGGGGCACTGGTGGTGAGTTTGCCGGTGGGCGTCGACCCGCCTCGC
GCGCGAGCCAGAGGGGAAGTAGCTTACGATTCGGGAGGCATGGATCAAGG
GGAGTCTGTTCAGCAGGGAGTGCGGGAGGTTCAGTGGGGAGGTTTTCAGG
TGGGGTGGGAAGTCGAATTATTTTCAAAAGGAGAAGTTCTGAGGAGCGTT
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