mRNA_M-pyrifera_M_contig93473.21587.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93473.21587.1
Unique NamemRNA_M-pyrifera_M_contig93473.21587.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93473.21587.1 vs. uniprot
Match: A0A7S1U6S1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6S1_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.610e-32
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 1
Query:  106 ADGKDWDKMDHELEKEEEEETPEGDEALHKLFRSIYSKADDDTRRAMVKSFQTSGGTVLSTNWGEVEKTDYEKDLKPPDGMEIKKYE 366
            A  +DWD++  ++EKE E E PEG+EALHKLFR IY KAD++TRRAMVKS+QTSGGTVLSTNWGEV+  DYEK+   P GME K +E
Sbjct:   45 ASHRDWDRIGADIEKELESEKPEGEEALHKLFRDIYGKADEETRRAMVKSYQTSGGTVLSTNWGEVKDKDYEKERIAPKGMEWKSWE 131          
BLAST of mRNA_M-pyrifera_M_contig93473.21587.1 vs. uniprot
Match: A0A7S2EEN1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EEN1_TRICV)

HSP 1 Score: 118 bits (295), Expect = 8.350e-32
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 1
Query:  106 ADGKDWDKMDHELEKEEEEETPEGDEALHKLFRSIYSKADDDTRRAMVKSFQTSGGTVLSTNWGEVEKTDYEKDLKPPDGMEIK 357
            A  ++W  ++ +L+++EEEE PEGDEAL+KLFR IY KAD+DTRRAMVKSFQTSGGTVLSTNW EV K DYEK+ + P GME K
Sbjct:   34 ASHRNWSAIERDLKRQEEEEKPEGDEALNKLFRDIYGKADEDTRRAMVKSFQTSGGTVLSTNWSEVSKKDYEKERQAPKGMEWK 117          
BLAST of mRNA_M-pyrifera_M_contig93473.21587.1 vs. uniprot
Match: B8C6P7_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C6P7_THAPS)

HSP 1 Score: 122 bits (305), Expect = 2.540e-31
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = 1
Query:  106 ADGKDWDKMDHELEKEEEEETPEGDEALHKLFRSIYSKADDDTRRAMVKSFQTSGGTVLSTNWGEVEKTDYEKDLKPPDGMEIKKY 363
            A  K+WDK+D +L  EEE+ETPEGDE+L+KLF+ IYS AD++TRRAMVKS QTSGGTVLSTNW EV KTDYEK+ + P GME K Y
Sbjct:  225 ASDKNWDKIDRDLALEEEKETPEGDESLNKLFKQIYSNADENTRRAMVKSMQTSGGTVLSTNWDEVGKTDYEKERQAPKGMEWKNY 310          
BLAST of mRNA_M-pyrifera_M_contig93473.21587.1 vs. uniprot
Match: A0A7S0AMY2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AMY2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.580e-31
Identity = 57/87 (65.52%), Postives = 71/87 (81.61%), Query Frame = 1
Query:  106 ADGKDWDKMDHELEKEEEEETPEGDEALHKLFRSIYSKADDDTRRAMVKSFQTSGGTVLSTNWGEVEKTDYEKDLKPPDGMEIKKYE 366
            A  KDWD ++ +L+KEEE E PEG+EAL+KLF+ IY KADD+TRRAMVKS+QTSGGTVLSTNW EV++ DYEK+ + P G E K +E
Sbjct:   59 ASHKDWDAIERDLKKEEEAEKPEGEEALNKLFQQIYGKADDETRRAMVKSYQTSGGTVLSTNWNEVKEKDYEKERQAPKGQEWKDWE 145          
BLAST of mRNA_M-pyrifera_M_contig93473.21587.1 vs. uniprot
Match: A0A7S4JFH3_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JFH3_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 7.830e-29
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = 1
Query:  115 KDWDKMDHELEKEEEEETPEGDEALHKLFRSIYSKADDDTRRAMVKSFQTSGGTVLSTNWGEVEKTDYEKDLKPPDGMEIKKY 363
            KDW+ ++ +L+++EEEE PEG+EAL+KLFR IY KA++DTRRAM KSFQTSGGTVLSTNWGEV   DYEKD   P+G E KK+
Sbjct:  282 KDWNNIETDLKRQEEEEKPEGEEALNKLFRDIYGKANEDTRRAMNKSFQTSGGTVLSTNWGEVAAKDYEKDRTAPEGQEWKKW 364          
BLAST of mRNA_M-pyrifera_M_contig93473.21587.1 vs. uniprot
Match: A0A6U2Y9T3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U2Y9T3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.040e-28
Identity = 55/87 (63.22%), Postives = 71/87 (81.61%), Query Frame = 1
Query:  106 ADGKDWDKMDHELEKEEEEETPEGDEALHKLFRSIYSKADDDTRRAMVKSFQTSGGTVLSTNWGEVEKTDYEKDLKPPDGMEIKKYE 366
            A  KDWD ++ ++E+EEE+E PEGD A++KLF+ IYS AD+DTRRAM+KS+QTSGGTVLSTNW EVE+ +YEK+   P GME K +E
Sbjct:  246 ASHKDWDSIEKDIEQEEEKEKPEGDAAMNKLFQQIYSNADEDTRRAMIKSYQTSGGTVLSTNWKEVEEKNYEKERTAPKGMEWKNWE 332          
BLAST of mRNA_M-pyrifera_M_contig93473.21587.1 vs. uniprot
Match: A0A0M0JDN6_9EUKA (Suppressor of g2 allele of skp1-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JDN6_9EUKA)

HSP 1 Score: 115 bits (289), Expect = 1.420e-28
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  115 KDWDKMDHELEKEEEEETPEGDEALHKLFRSIYSKADDDTRRAMVKSFQTSGGTVLSTNWGEVEKTDYEKDLKPPDGMEIKKY 363
            KDWD ++ +L+KEEE+E PEG+EAL+KLFR IY ++D+ TRRAM KSFQTSGGTVLSTNW EV + DYEKD   PDG E KK+
Sbjct:  277 KDWDAVESKLKKEEEDEKPEGEEALNKLFRDIYGRSDETTRRAMNKSFQTSGGTVLSTNWKEVAEKDYEKDRSAPDGQEWKKW 359          
BLAST of mRNA_M-pyrifera_M_contig93473.21587.1 vs. uniprot
Match: A0A7S2WL12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WL12_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.260e-28
Identity = 54/84 (64.29%), Postives = 69/84 (82.14%), Query Frame = 1
Query:  106 ADGKDWDKMDHELEKEEEEETPEGDEALHKLFRSIYSKADDDTRRAMVKSFQTSGGTVLSTNWGEVEKTDYEKDLKPPDGMEIK 357
            A  +DW+ ++ EL+K+E  E PEG+EAL+KLF++IY+ A+ DTRRAMVKSFQTSGGTVLSTNWGEV+K DYE + + P GME K
Sbjct:  141 ASHRDWNAIERELKKQEANEKPEGEEALNKLFKNIYAGANSDTRRAMVKSFQTSGGTVLSTNWGEVDKKDYENERQAPKGMEWK 224          
BLAST of mRNA_M-pyrifera_M_contig93473.21587.1 vs. uniprot
Match: A0A7S2HN48_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HN48_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.290e-28
Identity = 55/87 (63.22%), Postives = 71/87 (81.61%), Query Frame = 1
Query:  106 ADGKDWDKMDHELEKEEEEETPEGDEALHKLFRSIYSKADDDTRRAMVKSFQTSGGTVLSTNWGEVEKTDYEKDLKPPDGMEIKKYE 366
            A  KDWD ++ +L+K+EE E PEG+EAL+KLF++IY  A++DT+RAM+KS QTSGGTVLSTNW EV KTDYEK+ + P GME K +E
Sbjct:  322 ASHKDWDAIERDLKKQEENEKPEGEEALNKLFQNIYGNANEDTKRAMIKSMQTSGGTVLSTNWDEVSKTDYEKERQAPKGMEWKNWE 408          
BLAST of mRNA_M-pyrifera_M_contig93473.21587.1 vs. uniprot
Match: A0A1E7EUI7_9STRA (Chaperone binding protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUI7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.040e-28
Identity = 52/83 (62.65%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  115 KDWDKMDHELEKEEEEETPEGDEALHKLFRSIYSKADDDTRRAMVKSFQTSGGTVLSTNWGEVEKTDYEKDLKPPDGMEIKKY 363
            +DWD ++  + +EE++E PEGDEA++KLF+ IY+ A +DTRRAMVKSFQTSGGTVLSTNW EV+K DYEK+   PDG+E K +
Sbjct:  117 RDWDAIERNIIEEEKKEKPEGDEAMNKLFKQIYADASEDTRRAMVKSFQTSGGTVLSTNWDEVKKKDYEKERTAPDGVEWKNW 199          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93473.21587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1U6S1_9STRA6.610e-3266.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2EEN1_TRICV8.350e-3267.86Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
B8C6P7_THAPS2.540e-3169.77Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S0AMY2_9STRA2.580e-3165.52Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S4JFH3_9EUKA7.830e-2967.47Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A6U2Y9T3_9STRA1.040e-2863.22Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A0M0JDN6_9EUKA1.420e-2867.47Suppressor of g2 allele of skp1-like protein n=1 T... [more]
A0A7S2WL12_9STRA2.260e-2864.29Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2HN48_9STRA2.290e-2863.22Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1E7EUI7_9STRA3.040e-2862.65Chaperone binding protein (Fragment) n=1 Tax=Fragi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93473contigM-pyrifera_M_contig93473:31..402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue4.8e-26
Seed eggNOG ortholog35128.Thaps269341
KEGG koko:K03595,ko:K12795
KEGG Pathwayko04621,ko04626,map04621,map04626
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SGS domain
EggNOG OGs2XCHQ@2836,COG5091@1,KOG1309@2759
COG Functional cat.T
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03029
Exons1
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.3680968-CDS-M-pyrifera_M_contig93473:30..4021622816847.3680968-CDS-M-pyrifera_M_contig93473:30..402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93473 31..402 -
1692278213.4199362-CDS-M-pyrifera_M_contig93473:30..4021692278213.4199362-CDS-M-pyrifera_M_contig93473:30..402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93473 31..402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93473.21587.1prot_M-pyrifera_M_contig93473.21587.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93473 31..402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93473.21587.1

>prot_M-pyrifera_M_contig93473.21587.1 ID=prot_M-pyrifera_M_contig93473.21587.1|Name=mRNA_M-pyrifera_M_contig93473.21587.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
SATSAAAVPASSVPLPAPPSFAAAATTAPAKAPLPADGKDWDKMDHELEK
EEEEETPEGDEALHKLFRSIYSKADDDTRRAMVKSFQTSGGTVLSTNWGE
VEKTDYEKDLKPPDGMEIKKYEY*
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mRNA from alignment at M-pyrifera_M_contig93473:31..402-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93473.21587.1 ID=mRNA_M-pyrifera_M_contig93473.21587.1|Name=mRNA_M-pyrifera_M_contig93473.21587.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig93473:31..402- (Macrocystis pyrifera P11B4 male)
TCAGCCACAAGCGCAGCAGCAGTTCCTGCTTCTTCTGTTCCTCTCCCCGC ACCTCCTTCTTTCGCTGCTGCTGCCACCACTGCTCCAGCCAAGGCCCCTC TCCCAGCGGATGGCAAGGACTGGGACAAGATGGACCATGAGCTCGAGAAG GAGGAGGAGGAGGAGACGCCTGAAGGAGACGAAGCGCTTCACAAACTCTT CCGCTCCATCTACTCCAAGGCCGATGACGACACCAGGAGGGCAATGGTCA AGAGCTTCCAGACCTCGGGCGGCACCGTGCTCTCCACAAACTGGGGAGAG GTCGAGAAGACCGACTACGAAAAAGACCTCAAACCTCCAGACGGCATGGA AATCAAGAAATACGAATATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93473:31..402-

>mRNA_M-pyrifera_M_contig93473.21587.1 ID=mRNA_M-pyrifera_M_contig93473.21587.1|Name=mRNA_M-pyrifera_M_contig93473.21587.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig93473:31..402- (Macrocystis pyrifera P11B4 male)
TCAGCCACAAGCGCAGCAGCAGTTCCTGCTTCTTCTGTTCCTCTCCCCGC
ACCTCCTTCTTTCGCTGCTGCTGCCACCACTGCTCCAGCCAAGGCCCCTC
TCCCAGCGGATGGCAAGGACTGGGACAAGATGGACCATGAGCTCGAGAAG
GAGGAGGAGGAGGAGACGCCTGAAGGAGACGAAGCGCTTCACAAACTCTT
CCGCTCCATCTACTCCAAGGCCGATGACGACACCAGGAGGGCAATGGTCA
AGAGCTTCCAGACCTCGGGCGGCACCGTGCTCTCCACAAACTGGGGAGAG
GTCGAGAAGACCGACTACGAAAAAGACCTCAAACCTCCAGACGGCATGGA
AATCAAGAAATACGAATATTGATCAGCCACAAGCGCAGCAGCAGTTCCTG
CTTCTTCTGTTCCTCTCCCCGCACCTCCTTCTTTCGCTGCTGCTGCCACC
ACTGCTCCAGCCAAGGCCCCTCTCCCAGCGGATGGCAAGGACTGGGACAA
GATGGACCATGAGCTCGAGAAGGAGGAGGAGGAGGAGACGCCTGAAGGAG
ACGAAGCGCTTCACAAACTCTTCCGCTCCATCTACTCCAAGGCCGATGAC
GACACCAGGAGGGCAATGGTCAAGAGCTTCCAGACCTCGGGCGGCACCGT
GCTCTCCACAAACTGGGGAGAGGTCGAGAAGACCGACTACGAAAAAGACC
TCAAACCTCCAGACGGCATGGAAATCAAGAAATACGAATATTGA
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