mRNA_M-pyrifera_M_contig93463.21583.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93463.21583.1
Unique NamemRNA_M-pyrifera_M_contig93463.21583.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93463.21583.1 vs. uniprot
Match: A0A0G4F7D3_VITBC (Uricase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F7D3_VITBC)

HSP 1 Score: 93.2 bits (230), Expect = 1.410e-20
Identity = 43/111 (38.74%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   25 YGKQSVPVFKIEKVGPK-------HTVIDMVVKIMLEGDIKDSWLSGQNHQIVPTETQKNTCYALALENDFDCLENYGIALGRDMLARHSHLTTVKLDMLERIWTRVDVQG 336
            YGK  V V ++ K  PK       H ++++ V+ +LEG   +++  G N +IVPT+T KNT Y +A +++FD +E++G+AL R  L+RHSH+  V + + E++W R+ V G
Sbjct:    8 YGKTKVRVVRVRKTPPKSAGAGPWHELMEVEVETLLEGSFLEAYTHGDNGRIVPTDTVKNTTYVIAKKSNFDSIEDFGLALMRHFLSRHSHIDRVTVTLTEKLWNRLTVSG 118          
BLAST of mRNA_M-pyrifera_M_contig93463.21583.1 vs. uniprot
Match: A0A8J4Q0Z7_9MYCE (Uricase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q0Z7_9MYCE)

HSP 1 Score: 87.8 bits (216), Expect = 1.390e-18
Identity = 42/111 (37.84%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 MSFVLEPTYGKQSVPVFKIEKVGP-KHTVIDMVVKIMLEGDIKDSWLSGQNHQIVPTETQKNTCYALALENDFDCLENYGIALGRDMLARHSHLTTVKLDMLERIWTRVDV 330
            M+ +++  YGK  V V ++ +    KH + D   +++L+GD  D++L+G N ++VPT+T KNT Y LA +  F  LE +GI LG+  +A +S ++ V+  M E +W RV V
Sbjct:    1 MATLVDNRYGKARVRVLRVFRESEQKHNIFDFDCRVLLKGDFSDTYLTGDNSKVVPTDTVKNTIYILAQQETFKSLEEFGIILGKHFIANYSWVSGVEAVMKENVWRRVPV 111          
BLAST of mRNA_M-pyrifera_M_contig93463.21583.1 vs. uniprot
Match: A0A7W1BLG0_9BACT (Uricase n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7W1BLG0_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.700e-18
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   10 VLEPTYGKQSVPVFKIEKVGPKHTVIDMVVKIMLEGDIKDSWLSGQNHQIVPTETQKNTCYALALENDFDCLENYGIALGRDMLARHSHLTTVKLDMLERIWTRVDVQG 336
            ++   YGKQ + V K+ +   +H ++DM V I  EGD       G N + +PT+T KNT YALA    FD +E +GIAL +      +H++ +++D+ ER W R+ V G
Sbjct:    5 LVSDNYGKQRIRVVKVIRHPDRHDILDMAVGIRFEGDYAAVHSEGDNARCLPTDTMKNTVYALAKREPFDEIERFGIALAKHFFETTAHVSLIRIDLAERRWNRLVVNG 113          
BLAST of mRNA_M-pyrifera_M_contig93463.21583.1 vs. uniprot
Match: UPI001982D783 (Urate oxidase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001982D783)

HSP 1 Score: 85.5 bits (210), Expect = 9.100e-18
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   25 YGKQSVPVFKIEKVGPKHTVIDMVVKIMLEGDIKDSWLSGQNHQIVPTETQKNTCYALALENDFDCLENYGIALGRDMLARHSHLTTVKLDMLERIWTRVDVQG 336
            YGKQ V + K+ +   +H + D+VV I  EG+       G N + +PT+T KNT YALA +  FD +E  G AL +      +H++ +++D+ ER W R++V G
Sbjct:   10 YGKQRVRLVKVTRHSDRHEIFDIVVGIRFEGEYAAVHSEGDNARCLPTDTMKNTVYALAKQESFDEIEGLGFALAKHFFRTTAHVSRIRIDLTERRWNRLEVDG 113          
BLAST of mRNA_M-pyrifera_M_contig93463.21583.1 vs. uniprot
Match: A0A7V9AU14_9BACT (Uricase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V9AU14_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 1.180e-17
Identity = 37/107 (34.58%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   16 EPTYGKQSVPVFKIEKVGPKHTVIDMVVKIMLEGDIKDSWLSGQNHQIVPTETQKNTCYALALENDFDCLENYGIALGRDMLARHSHLTTVKLDMLERIWTRVDVQG 336
            +  YGK  + + ++ + G +H + D+ V +  EGD  +S+++G N  ++PT+T KNT YA A     D  E++G+ L    L R+  L  V +D+ E +W R+DV G
Sbjct:    4 DTAYGKSGIRLVQVTRQGDRHVLRDLSVAVRFEGDYDESYVAGDNSDVLPTDTMKNTVYAHAAHAPLDEPESFGLGLAEHFLDRNPKLQRVTIDVSEHLWARIDVDG 110          
BLAST of mRNA_M-pyrifera_M_contig93463.21583.1 vs. uniprot
Match: A0A7W1P900_9BACT (Uricase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1P900_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 6.310e-17
Identity = 35/105 (33.33%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   10 VLEPTYGKQSVPVFKIEKVGPKHTVIDMVVKIMLEGDIKDSWLSGQNHQIVPTETQKNTCYALALENDFDCLENYGIALGRDMLARHSHLTTVKLDMLERIWTRV 324
            +++  YGK  V + ++ + G +H + D+ + I  +G   +S+  G N  ++PT+T KNT YALA        E++G+ L R  LAR+  L  V++D+ E +W R+
Sbjct:    2 LVQSAYGKSRVRIVQVRRKGNRHDLHDLTIAIQFKGQYDESYTEGDNSAVLPTDTMKNTVYALAAREPVQAPESFGLVLARHFLARNPRLVRVRIDLTEHLWGRL 106          
BLAST of mRNA_M-pyrifera_M_contig93463.21583.1 vs. uniprot
Match: A0A4Q8BFM3_9ACTN (Uricase n=1 Tax=Micromonospora kangleipakensis TaxID=1077942 RepID=A0A4Q8BFM3_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 6.570e-17
Identity = 34/100 (34.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   25 YGKQSVPVFKIEKVGPKHTVIDMVVKIMLEGDIKDSWLSGQNHQIVPTETQKNTCYALALENDFDCLENYGIALGRDMLARHSHLTTVKLDMLERIWTRV 324
            YGK    + ++E+ GP+H + D+ V ++L GD+  + L+G N Q++PT++QKNT YA A ++  D +E++G+ L R  ++  + ++  ++D+ E  W R+
Sbjct:   10 YGKAETRLVRVERGGPRHELRDLTVTVVLAGDLAATHLTGDNSQVLPTDSQKNTVYAFARQHGVDQIEDFGLLLARHFVSSQAAISRARVDLSEYAWQRL 109          
BLAST of mRNA_M-pyrifera_M_contig93463.21583.1 vs. uniprot
Match: A0A642UYA3_9ASCO (Uricase n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642UYA3_9ASCO)

HSP 1 Score: 83.6 bits (205), Expect = 6.600e-17
Identity = 43/115 (37.39%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 MSFVLEPTYGKQSVPVFKI--EKVGPKH-TVIDMVVKIMLEGDIKDSWLSGQNHQIVPTETQKNTCYALALENDFDCLENYGIALGRDMLARHSHLTTVKLDMLERIWTRVDVQG 336
            MS +    YGK +V V K+  +     H  VI++ V+++LEGDI++S+    N  +VPT+T KNT Y LA +N+   +E +G  L    ++R+ H+     D+++  WTR DVQG
Sbjct:    1 MSSLSAARYGKDNVRVLKVWRDPNDRNHQAVIELTVRVLLEGDIEESYTKADNSPVVPTDTVKNTVYILAKQNNVWPIEQFGATLVNHFISRYPHIHAAHADIVQHRWTRFDVQG 115          
BLAST of mRNA_M-pyrifera_M_contig93463.21583.1 vs. uniprot
Match: A0A152A1I8_9MYCE (Uricase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A1I8_9MYCE)

HSP 1 Score: 83.2 bits (204), Expect = 7.020e-17
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 MSFVLEPTYGKQSVPVFKIEKVGPKHTVIDMVVKIMLEGD-IKDSWLSGQNHQIVPTETQKNTCYALALENDFDCLENYGIALGRDMLARHSHLTTVKLDMLERIWTRV 324
            M+ +++  YGK  V V ++ K G  H + D    ++L GD  K+++L+G N ++VPT+T KNT Y LA +  F  LE +GI LG+  +  +SH+  V   M E  W R+
Sbjct:    1 MATLVDNRYGKAKVRVLRLFKTGDYHKIFDFDCCVLLLGDEFKETYLTGDNKRVVPTDTVKNTIYVLAQQETFKSLEEFGIILGKHFIKTYSHVQGVHATMKENSWARM 109          
BLAST of mRNA_M-pyrifera_M_contig93463.21583.1 vs. uniprot
Match: A0A8H8IPT2_9AGAM (Uricase n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8IPT2_9AGAM)

HSP 1 Score: 82.8 bits (203), Expect = 1.250e-16
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 MSFVLEPTYGKQSVPVFKIEKVGPKHTVIDMVVKIMLEGDIKDSWLSGQNHQIVPTETQKNTCYALALENDFDCL-ENYGIALGRDMLARHSHLTTVKLDMLERIWTRVDVQG 336
            MS +    YGK  V VF+I + G KH+V++ +V+ +LEGDI  S+    N  +V T++ KNTCY +A  +      E Y + LG   + ++ H+    +D+ +  WTR+DV+G
Sbjct:    1 MSSLTAARYGKDKVRVFRIVRDGDKHSVVEYIVRALLEGDIATSYTQADNSVVVATDSIKNTCYVIAKTSPHVLSPELYALHLGTHFVTKYPHIHKAFIDVEQLKWTRIDVEG 113          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93463.21583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4F7D3_VITBC1.410e-2038.74Uricase n=1 Tax=Vitrella brassicaformis (strain CC... [more]
A0A8J4Q0Z7_9MYCE1.390e-1837.84Uricase n=1 Tax=Polysphondylium violaceum TaxID=13... [more]
A0A7W1BLG0_9BACT1.700e-1837.61Uricase n=1 Tax=Gemmatimonadaceae bacterium TaxID=... [more]
UPI001982D7839.100e-1837.50Urate oxidase n=1 Tax=Anaerolineae bacterium TaxID... [more]
A0A7V9AU14_9BACT1.180e-1734.58Uricase n=1 Tax=Acidobacteria bacterium TaxID=1978... [more]
A0A7W1P900_9BACT6.310e-1733.33Uricase n=1 Tax=Acidobacteria bacterium TaxID=1978... [more]
A0A4Q8BFM3_9ACTN6.570e-1734.00Uricase n=1 Tax=Micromonospora kangleipakensis Tax... [more]
A0A642UYA3_9ASCO6.600e-1737.39Uricase n=1 Tax=Trichomonascus ciferrii TaxID=4409... [more]
A0A152A1I8_9MYCE7.020e-1737.61Uricase n=1 Tax=Tieghemostelium lacteum TaxID=3610... [more]
A0A8H8IPT2_9AGAM1.250e-1636.28Uricase n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93463contigM-pyrifera_M_contig93463:417..752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score83.2
Seed ortholog evalue8.5e-14
Seed eggNOG ortholog448385.sce4023
Preferred nameuox
KEGG rclassRC01551,RC02107,RC02551
KEGG koko:K00365,ko:K16838
KEGG ReactionR02106,R06604,R07981
KEGG Pathwayko00230,ko00232,ko01100,ko01120,map00230,map00232,map01100,map01120
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Catalyzes the oxidation of uric acid to 5- hydroxyisourate, which is further processed to form (S)-allantoin
EggNOG OGs1PX3F@1224,COG3648@1,COG3648@2
EC1.7.3.3,4.1.1.97
COG Functional cat.Q
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.194373-CDS-M-pyrifera_M_contig93463:416..7521622816847.194373-CDS-M-pyrifera_M_contig93463:416..752Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93463 417..752 +
1692278213.345084-CDS-M-pyrifera_M_contig93463:416..7521692278213.345084-CDS-M-pyrifera_M_contig93463:416..752Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93463 417..752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93463.21583.1prot_M-pyrifera_M_contig93463.21583.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93463 417..752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93463.21583.1

>prot_M-pyrifera_M_contig93463.21583.1 ID=prot_M-pyrifera_M_contig93463.21583.1|Name=mRNA_M-pyrifera_M_contig93463.21583.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MSFVLEPTYGKQSVPVFKIEKVGPKHTVIDMVVKIMLEGDIKDSWLSGQN
HQIVPTETQKNTCYALALENDFDCLENYGIALGRDMLARHSHLTTVKLDM
LERIWTRVDVQG
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mRNA from alignment at M-pyrifera_M_contig93463:417..752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93463.21583.1 ID=mRNA_M-pyrifera_M_contig93463.21583.1|Name=mRNA_M-pyrifera_M_contig93463.21583.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig93463:417..752+ (Macrocystis pyrifera P11B4 male)
ATGTCGTTCGTACTGGAGCCCACGTATGGAAAGCAGTCGGTGCCTGTCTT CAAGATTGAGAAGGTGGGGCCGAAGCACACCGTGATTGATATGGTGGTCA AGATCATGCTGGAGGGAGACATCAAGGACTCCTGGCTCAGTGGCCAGAAC CACCAGATCGTGCCCACGGAGACGCAGAAGAACACCTGCTACGCCCTGGC GCTGGAGAACGACTTCGACTGTCTGGAGAACTACGGCATTGCGCTGGGCC GCGACATGCTGGCCAGGCACTCCCACCTGACGACGGTGAAGCTTGACATG CTGGAGCGCATCTGGACGCGGGTGGACGTGCAAGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93463:417..752+

>mRNA_M-pyrifera_M_contig93463.21583.1 ID=mRNA_M-pyrifera_M_contig93463.21583.1|Name=mRNA_M-pyrifera_M_contig93463.21583.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig93463:417..752+ (Macrocystis pyrifera P11B4 male)
ATGTCGTTCGTACTGGAGCCCACGTATGGAAAGCAGTCGGTGCCTGTCTT
CAAGATTGAGAAGGTGGGGCCGAAGCACACCGTGATTGATATGGTGGTCA
AGATCATGCTGGAGGGAGACATCAAGGACTCCTGGCTCAGTGGCCAGAAC
CACCAGATCGTGCCCACGGAGACGCAGAAGAACACCTGCTACGCCCTGGC
GCTGGAGAACGACTTCGACTGTCTGGAGAACTACGGCATTGCGCTGGGCC
GCGACATGCTGGCCAGGCACTCCCACCTGACGACGGTGAAGCTTGACATG
CTGGAGCGCATCTGGACGCGGGTGGACGTGCAAGGAATGTCGTTCGTACT
GGAGCCCACGTATGGAAAGCAGTCGGTGCCTGTCTTCAAGATTGAGAAGG
TGGGGCCGAAGCACACCGTGATTGATATGGTGGTCAAGATCATGCTGGAG
GGAGACATCAAGGACTCCTGGCTCAGTGGCCAGAACCACCAGATCGTGCC
CACGGAGACGCAGAAGAACACCTGCTACGCCCTGGCGCTGGAGAACGACT
TCGACTGTCTGGAGAACTACGGCATTGCGCTGGGCCGCGACATGCTGGCC
AGGCACTCCCACCTGACGACGGTGAAGCTTGACATGCTGGAGCGCATCTG
GACGCGGGTGGACGTGCAAGGA
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