mRNA_M-pyrifera_M_contig93461.21581.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93461.21581.1
Unique NamemRNA_M-pyrifera_M_contig93461.21581.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93461.21581.1 vs. uniprot
Match: A0A7S4IR16_9EUKA (DNA-directed RNA polymerase n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IR16_9EUKA)

HSP 1 Score: 289 bits (739), Expect = 2.460e-87
Identity = 133/233 (57.08%), Postives = 170/233 (72.96%), Query Frame = 1
Query:    1 DLSRVYHVLDVLGEVPWRINRRLFAVMEQCWAAGGNFPYVPARANAAFPAPPADARTNAEARGLWRKDRAKVAQKNKELHSLRCDFILKLLTARQFVDEPRIYFPHNMDFRGRVYPIPPHLNHMGADISRGMLEFAEVRPLGARGLYWLKVHVANLCGKNKVPFDERVAFADAHLADILDSAAAPLEGRRWWLKAAEDHWQCLAACLEISDALASGDAAAFVSRLPTHMDGSC 699
            DL+ V  +L +LG+VPWRIN R++ V+ + W  GGN PYVP + +   P PP D R N EAR LWR+++ K  QKN+E  SLRCDF+LK  TA   + E   +FPHNMDFRGR YPIPPHLNH+G+D+ RG+L+FAE +PLG RGLYWLK H+A+LCG NKV FD+RV + + H+ADI+DSA  PL+G RWWL+A +D WQ L+ C E+ DAL   D   +VS +P HMDGSC
Sbjct:  590 DLTDVCELLTILGKVPWRINSRVYDVVNEGWNRGGNLPYVPGKQSIRSPTPPPDFRENPEARLLWRREKNKTNQKNQERFSLRCDFMLKKNTAEALLGEDAFFFPHNMDFRGRCYPIPPHLNHIGSDVCRGLLQFAEGKPLGERGLYWLKAHLASLCGVNKVSFDDRVKYTEDHIADIIDSAENPLDGNRWWLEA-DDAWQALSCCFELRDALRMKDPTKYVSHVPIHMDGSC 821          
BLAST of mRNA_M-pyrifera_M_contig93461.21581.1 vs. uniprot
Match: A0A7S1CMM7_9STRA (DNA-directed RNA polymerase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMM7_9STRA)

HSP 1 Score: 247 bits (631), Expect = 8.430e-74
Identity = 129/239 (53.97%), Postives = 153/239 (64.02%), Query Frame = 1
Query:    4 LSRVYHVLDVLGEVPWRINRRLFAVMEQCWAAGGNFPYVPARANAAFPAPPA-------DARTNAEARGLWRKDRAKVAQKNKELHSLRCDFILKLLTARQFVDEPRIYFPHNMDFRGRVYPIPPHLNHMGADISRGMLEFAEVRPLGARGLYWLKVHVANLCGKNKVPFDERVAFADAHLADILDSAAAPLEGRRWWLKAAEDHWQCLAACLEISDALASGDAAAFVSRLPTHMDGSC 699
            +  VY  LD LG V WRIN  +  V++  W AGG    +P R + A PA PA       D +  A  R  +     +  Q N++LHSLRCD  LKL  A  F D  + YFP N+DFRGR YP+PPHLNH+G+D+ RG+L FAE RPLG RGL WLK+H+ANL G +K   D+R AFAD HLAD LDSAA PL G RWWL AA   WQ LAAC E++DA A GD  AF SRLP H DGSC
Sbjct:  206 MDAVYEGLDALGRVSWRINTFVHDVVKAAWGAGGGLGELPPRVDPAPPAAPAWDDMGALDPKELALERRRYSMRLKRAMQHNRDLHSLRCDMALKLQVADAFCDS-KFYFPFNLDFRGRAYPVPPHLNHLGSDVCRGLLTFAEARPLGDRGLRWLKIHLANLMGYDKASLDDRAAFADEHLADALDSAANPLGGDRWWLTAANP-WQALAACKELADAYACGDPTAFESRLPVHQDGSC 442          
BLAST of mRNA_M-pyrifera_M_contig93461.21581.1 vs. uniprot
Match: A0A151Z5F9_9MYCE (DNA-directed RNA polymerase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z5F9_9MYCE)

HSP 1 Score: 249 bits (635), Expect = 3.030e-73
Identity = 123/235 (52.34%), Postives = 161/235 (68.51%), Query Frame = 1
Query:    1 DLSRVYHVLDVLGEVPWRINRRLFAVMEQCWAAGGNFPYVPARANAAFPAPPADARTNAEARGLWRKDRAKVAQKNKELHSLRCDFILKLLTARQFVDEPRIYFPHNMDFRGRVYPIPPHLNHMGADISRGMLEFAEVRPLGARGLYWLKVHVANLCGKNKVPFDERVAFADAHL--ADILDSAAAPLEGRRWWLKAAEDHWQCLAACLEISDALASGDAAAFVSRLPTHMDGSC 699
            DL+ +Y  L+ LGE PW IN++++ V+ +CW  GG    +P R++   P  P D  TN E+R  + K   K+ + N +LHSLRCD ILKL  A +F+D+  IYFPHN+DFRGR YPIPPHLNH+G+D  R +L+F E RPL  RGL WLKVH+ANL G +K+P ++RVAF +  L   +I DS   PLEG  WWLKA ++ WQ LAAC+E+ DAL SG+  AF S LP H DG+C
Sbjct:  436 DLTHIYDGLNALGETPWVINQKVYKVINECWVNGGGLGEIPKRSDHELPQIPDDYATNIESRKQYIKSEQKIKRLNFDLHSLRCDTILKLNVAERFLDKT-IYFPHNVDFRGRSYPIPPHLNHLGSDFCRSLLKFKEKRPLTERGLRWLKVHIANLYGVDKIPHEDRVAFTEKQLENGNIRDSVDRPLEGNMWWLKA-DNPWQTLAACIELVDALDSGNPEAFESNLPIHQDGTC 668          
BLAST of mRNA_M-pyrifera_M_contig93461.21581.1 vs. uniprot
Match: F4Q691_CAVFA (DNA-directed RNA polymerase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q691_CAVFA)

HSP 1 Score: 248 bits (634), Expect = 1.160e-72
Identity = 126/233 (54.08%), Postives = 160/233 (68.67%), Query Frame = 1
Query:    1 DLSRVYHVLDVLGEVPWRINRRLFAVMEQCWAAGGNFPYVPARANAAFPAPPADARTNAEARGLWRKDRAKVAQKNKELHSLRCDFILKLLTARQFVDEPRIYFPHNMDFRGRVYPIPPHLNHMGADISRGMLEFAEVRPLGARGLYWLKVHVANLCGKNKVPFDERVAFADAHLADILDSAAAPLEGRRWWLKAAEDHWQCLAACLEISDALASGDAAAFVSRLPTHMDGSC 699
            DLS++Y  L++LGEVPW INR +  ++   W +GG    +P+R +   P   A+   +AE R    K   KV Q N +LHSLRCD   KL   +Q + E   YFPHN+DFRGR YPIPPHLNH+G+D  R ML FAE +PLGARGL WLKVH+ANL G +KV FD+R+AF D+H+AD+ DSA  PL G RWWL AA+  WQ LA C+E+++A+ SGD A F+S LP H DGSC
Sbjct:  558 DLSKIYEGLNILGEVPWNINRPVLDIILAAWESGGGIGDLPSRFDYELPLA-AEYSESAEQRKKHAKLVKKVKQLNHDLHSLRCDLSYKLDVGKQ-LREHDFYFPHNVDFRGRSYPIPPHLNHLGSDFCRAMLTFAEKKPLGARGLMWLKVHLANLSGVDKVSFDDRIAFVDSHMADVYDSADNPLNGARWWL-AADKPWQALATCIELANAVRSGDPANFMSSLPLHQDGSC 787          
BLAST of mRNA_M-pyrifera_M_contig93461.21581.1 vs. uniprot
Match: UPI000644856E (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644856E)

HSP 1 Score: 242 bits (617), Expect = 6.670e-71
Identity = 119/235 (50.64%), Postives = 159/235 (67.66%), Query Frame = 1
Query:    1 DLSRVYHVLDVLGEVPWRINRRLFAVMEQCWAAGGNFPYVPARANAAFP--APPADARTNAEARGLWRKDRAKVAQKNKELHSLRCDFILKLLTARQFVDEPRIYFPHNMDFRGRVYPIPPHLNHMGADISRGMLEFAEVRPLGARGLYWLKVHVANLCGKNKVPFDERVAFADAHLADILDSAAAPLEGRRWWLKAAEDHWQCLAACLEISDALASGDAAAFVSRLPTHMDGSC 699
            D+S +Y  L++LG +PW+ N+++  V+ + W AGG    +P+R N   P  A P    T+ E +    K+  K+   N  LHSLRCD + KL  A+Q  D  + YFPHN+DFRGR YPIPPHLNHMG+D+ R ML FAE +PLGARGL WL+V VAN+ G +KV F++R+AF + H+ DI DSA  PL+GR+WWLKA +  WQ LAAC+E++DAL S     F+S LP H DG+C
Sbjct:  389 DISNIYEGLNILGSLPWKTNKKVVDVIVEAWEAGGGIAELPSRFNFEQPVAADPEKLTTDLEMKKQHSKNVKKIKTLNANLHSLRCDTVYKLNVAKQLHDY-KFYFPHNIDFRGRSYPIPPHLNHMGSDLCRSMLRFAEAKPLGARGLQWLRVQVANVYGVDKVSFEDRIAFTEEHMDDIFDSADNPLKGRKWWLKA-DSPWQTLAACIELTDALRSPKPEEFLSSLPIHQDGTC 621          
BLAST of mRNA_M-pyrifera_M_contig93461.21581.1 vs. uniprot
Match: A0A068U3U9_COFCA (DNA-directed RNA polymerase n=2 Tax=Coffea TaxID=13442 RepID=A0A068U3U9_COFCA)

HSP 1 Score: 234 bits (596), Expect = 7.260e-70
Identity = 116/234 (49.57%), Postives = 151/234 (64.53%), Query Frame = 1
Query:    4 LSRVYHVLDVLGEVPWRINRRLFAVMEQCWAAGGNFPYVPARANAAFPAPPADARTNAEARGLWRKDRAKVAQKNKELHSLRCDFILKLLTARQFVDEPRIYFPHNMDFRGRVYPIPPHLNHMGADISRGMLEFAEVRPLGARGLYWLKVHVANLCGK--NKVPFDERVAFADAHLADILDSAAAPLEGRRWWLKAAEDHWQCLAACLEISDALASGDAAAFVSRLPTHMDGSC 699
            + +VY  LD LG   WR+NRR+  V+E  W  GGN   +  R +   P   +DA   AE    W+ +  K  + N+E HS RCD  LKL  A +  DE   Y+PHN+DFRGR YP+ PHLNH+ +D+ RG+LEFAE RPLG  G+YWLK+H+ANL G    K+ +D+R+AF + HL ++LDSA  PL G RWWLKA ED +QCLAAC+ +S+AL S      +S LP H DGSC
Sbjct:   90 MQKVYEALDTLGNTKWRVNRRILNVVETVWGGGGNIAGLVNRNDVHIPELHSDA---AEEIKKWKWNMRKAKKINRERHSQRCDIELKLSVAHKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGLLEFAEGRPLGKSGVYWLKIHLANLYGGVVKKLSYDQRLAFVENHLNEVLDSADNPLNGNRWWLKA-EDPFQCLAACMNLSEALKSSSPHTVISHLPIHQDGSC 319          
BLAST of mRNA_M-pyrifera_M_contig93461.21581.1 vs. uniprot
Match: Q95NZ8_DICDI (DNA-directed RNA polymerase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q95NZ8_DICDI)

HSP 1 Score: 238 bits (606), Expect = 3.540e-69
Identity = 115/233 (49.36%), Postives = 157/233 (67.38%), Query Frame = 1
Query:    1 DLSRVYHVLDVLGEVPWRINRRLFAVMEQCWAAGGNFPYVPARANAAFPAPPADARTNAEARGLWRKDRAKVAQKNKELHSLRCDFILKLLTARQFVDEPRIYFPHNMDFRGRVYPIPPHLNHMGADISRGMLEFAEVRPLGARGLYWLKVHVANLCGKNKVPFDERVAFADAHLADILDSAAAPLEGRRWWLKAAEDHWQCLAACLEISDALASGDAAAFVSRLPTHMDGSC 699
            D+S +Y  L++LGE PW INR L+ V+ + WA GGN   +P R +  +P    D   + EAR    K   ++   N  LHSLRCD   KL  AR+F+D   +YFPHN+DFRGR YPIPPHLNH+G+D  R +L+F +  PLG +GL WLK+HVANL G +K+P +ER+AF + ++ +I DS  +PL G +WWLKA ++ WQ LAAC+E++ A+ SG  A F+S LP H DG+C
Sbjct:  426 DMSLIYRALNILGETPWVINRDLYNVILEAWANGGNIGDIPKRTDFEYPEISDDMLFDHEARKELYKKEQRIKSLNFNLHSLRCDTNYKLEVARKFLDHT-LYFPHNIDFRGRSYPIPPHLNHLGSDFCRSLLKFEKSLPLGEKGLEWLKIHVANLYGVDKIPLNERLAFTERNMENIFDSVDSPLNGNKWWLKA-DNPWQTLAACMELTKAIRSGKPAEFLSNLPIHQDGTC 656          
BLAST of mRNA_M-pyrifera_M_contig93461.21581.1 vs. uniprot
Match: A0A2R6XNW4_MARPO (DNA-directed RNA polymerase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XNW4_MARPO)

HSP 1 Score: 238 bits (606), Expect = 7.110e-69
Identity = 119/234 (50.85%), Postives = 155/234 (66.24%), Query Frame = 1
Query:    4 LSRVYHVLDVLGEVPWRINRRLFAVMEQCWAAGGNFPYVPARANAAFPAPPADARTNAEARGLWRKDRAKVAQKNKELHSLRCDFILKLLTARQFVDEPRIYFPHNMDFRGRVYPIPPHLNHMGADISRGMLEFAEVRPLGARGLYWLKVHVANLC--GKNKVPFDERVAFADAHLADILDSAAAPLEGRRWWLKAAEDHWQCLAACLEISDALASGDAAAFVSRLPTHMDGSC 699
            +  V+H L+ LG V W+IN R+  V+E+ W  GG    +    N + P+ P      AE RG WR++  K  + N E HSLRCD  LKL  AR+  DE   Y+PHN+DFRGR YP+ PHLNH+G+D+ RG+LEFAE  PLG  GL WLK+H+AN+   G +K+ FD RVAFA+  + ++ DSA  PLEGRRWWL+A ED +QCLA C+ + DAL+SGD   +V  LP H DGSC
Sbjct:  511 MHNVFHALNTLGSVRWKINTRVLDVIEEIWKDGGRLAQMVDADNVSVPSRPCT-EDEAEIRG-WRREAGKAKRINCERHSLRCDTELKLTVARKLRDEEAFYYPHNLDFRGRAYPLHPHLNHLGSDMCRGVLEFAEGHPLGTTGLRWLKIHLANVFAGGVDKLSFDGRVAFAEEKMDEVFDSAERPLEGRRWWLEA-EDPFQCLATCMALRDALSSGDVENYVCNLPVHQDGSC 741          
BLAST of mRNA_M-pyrifera_M_contig93461.21581.1 vs. uniprot
Match: A0A4T0FF41_9BASI (DNA-directed RNA polymerase n=1 Tax=Wallemia hederae TaxID=1540922 RepID=A0A4T0FF41_9BASI)

HSP 1 Score: 238 bits (607), Expect = 1.410e-68
Identity = 119/226 (52.65%), Postives = 153/226 (67.70%), Query Frame = 1
Query:   25 LDVLGEVPWRINRRLFAVMEQCWAAGGNFPYVP-ARANAAFPAPPADARTNAEARGLWRKDRAKVAQKNKELHSLRCDFILKLLTARQFVDEPRIYFPHNMDFRGRVYPIPPHLNHMGADISRGMLEFAEVRPLGARGLYWLKVHVANLCGKNKVPFDERVAFADAHLADILDSAAAPLEGRRWWLKAAEDHWQCLAACLEISDALASGDAAAFVSRLPTHMDGSC 699
            LDVLG+ PW IN+++FAV++Q W +G     +P A  N   P  PA+  T+ + R  +  +   V  + +  HS+RCD   KL  A+ F++E   YFPH +DFRGR YPIPPHLNH+G D+SRG+L+FAE RPLG +GL WLK+H+AN+ G +K  F+ER  FAD HL DI DSA  PL+G RWWLKA +D WQCLAAC EI  AL S +  AF S LP H DG+C
Sbjct:  667 LDVLGQTPWNINKKVFAVVKQAWNSGDGVGKIPPATTNTPDPIKPANYETDPKERSNYLINMKAVVNERRNNHSIRCDTNYKLEIAKAFLNET-FYFPHTLDFRGRAYPIPPHLNHIGDDLSRGLLKFAEKRPLGEKGLRWLKIHLANVYGYDKASFNEREKFADEHLTDIYDSADHPLDGGRWWLKA-DDPWQCLAACYEIQQALESPNPLAFESSLPVHQDGTC 890          
BLAST of mRNA_M-pyrifera_M_contig93461.21581.1 vs. uniprot
Match: A6GV61_CHRMO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Chrysanthemum morifolium TaxID=41568 RepID=A6GV61_CHRMO)

HSP 1 Score: 224 bits (570), Expect = 2.110e-68
Identity = 111/235 (47.23%), Postives = 155/235 (65.96%), Query Frame = 1
Query:    4 LSRVYHVLDVLGEVPWRINRRLFAVMEQCWAAGGNFPYVPARANAAFPAPPADARTNAEARGLWRKDRAKVAQKNKELHSLRCDFILKL-LTARQFVDEPRIYFPHNMDFRGRVYPIPPHLNHMGADISRGMLEFAEVRPLGARGLYWLKVHVANLCGKN--KVPFDERVAFADAHLADILDSAAAPLEGRRWWLKAAEDHWQCLAACLEISDALASGDAAAFVSRLPTHMDGSC 699
            + ++Y  LD LG   WR+N+RL  V+E  WAAGG+   +  R + + P    ++  ++E +  WR    K  + N+ELHS RCD  LKL + AR+  DE   Y+PHN+DFRGR YP+ PHLNH+ +D+ RG+LEFAE RPLG  GL WL++H+ANL G    K+ +D R+AF ++H+++I+DSA  PL G RWWL A ED +QCLAAC+ +++ L S      +S LP H DGSC
Sbjct:   34 MQKIYEALDTLGSTKWRVNKRLLNVVESIWAAGGDIAGLVNRQDVSIP--DLNSEDSSEIKE-WRWSVRKAKKMNQELHSQRCDIELKLSVVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLRIHLANLYGSGVEKLSYDGRLAFVESHISEIIDSADNPLGGNRWWLTA-EDPFQCLAACINLAETLKSSSPHTVISHLPVHQDGSC 264          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93461.21581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IR16_9EUKA2.460e-8757.08DNA-directed RNA polymerase n=1 Tax=Vannella sp. C... [more]
A0A7S1CMM7_9STRA8.430e-7453.97DNA-directed RNA polymerase n=1 Tax=Bicosoecida sp... [more]
A0A151Z5F9_9MYCE3.030e-7352.34DNA-directed RNA polymerase n=1 Tax=Tieghemosteliu... [more]
F4Q691_CAVFA1.160e-7254.08DNA-directed RNA polymerase n=1 Tax=Cavenderia fas... [more]
UPI000644856E6.670e-7150.64hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A068U3U9_COFCA7.260e-7049.57DNA-directed RNA polymerase n=2 Tax=Coffea TaxID=1... [more]
Q95NZ8_DICDI3.540e-6949.36DNA-directed RNA polymerase n=1 Tax=Dictyostelium ... [more]
A0A2R6XNW4_MARPO7.110e-6950.85DNA-directed RNA polymerase n=2 Tax=Marchantia pol... [more]
A0A4T0FF41_9BASI1.410e-6852.65DNA-directed RNA polymerase n=1 Tax=Wallemia heder... [more]
A6GV61_CHRMO2.110e-6847.23DNA-directed RNA polymerase (Fragment) n=1 Tax=Chr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93461contigM-pyrifera_M_contig93461:53..751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score244.6
Seed ortholog evalue4.6e-62
Seed eggNOG ortholog44689.DDB0191106
Preferred namerpom-1
KEGG koko:K00960,ko:K10908,ko:K11446
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000959,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006351,GO:0006390,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034245,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098798,GO:0140053,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
EggNOG OGs3XANZ@554915,COG5108@1,KOG1038@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03029,ko03036
Exons1
Model size699
Cds size699
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.122475-CDS-M-pyrifera_M_contig93461:52..7511622816847.122475-CDS-M-pyrifera_M_contig93461:52..751Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93461 53..751 +
1692278213.313976-CDS-M-pyrifera_M_contig93461:52..7511692278213.313976-CDS-M-pyrifera_M_contig93461:52..751Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93461 53..751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93461.21581.1prot_M-pyrifera_M_contig93461.21581.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93461 53..751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93461.21581.1

>prot_M-pyrifera_M_contig93461.21581.1 ID=prot_M-pyrifera_M_contig93461.21581.1|Name=mRNA_M-pyrifera_M_contig93461.21581.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=233bp
DLSRVYHVLDVLGEVPWRINRRLFAVMEQCWAAGGNFPYVPARANAAFPA
PPADARTNAEARGLWRKDRAKVAQKNKELHSLRCDFILKLLTARQFVDEP
RIYFPHNMDFRGRVYPIPPHLNHMGADISRGMLEFAEVRPLGARGLYWLK
VHVANLCGKNKVPFDERVAFADAHLADILDSAAAPLEGRRWWLKAAEDHW
QCLAACLEISDALASGDAAAFVSRLPTHMDGSC
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mRNA from alignment at M-pyrifera_M_contig93461:53..751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93461.21581.1 ID=mRNA_M-pyrifera_M_contig93461.21581.1|Name=mRNA_M-pyrifera_M_contig93461.21581.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=699bp|location=Sequence derived from alignment at M-pyrifera_M_contig93461:53..751+ (Macrocystis pyrifera P11B4 male)
GACCTCTCGCGCGTCTACCACGTGCTGGACGTGCTGGGCGAGGTGCCCTG GCGCATCAACCGCCGCCTCTTCGCCGTCATGGAGCAGTGCTGGGCGGCGG GCGGCAACTTCCCCTACGTCCCCGCCCGCGCCAACGCCGCATTCCCCGCG CCGCCGGCCGACGCGCGCACCAACGCAGAGGCGCGCGGCCTCTGGCGCAA GGACCGCGCCAAGGTCGCGCAGAAGAACAAGGAGCTCCACTCGCTGCGCT GCGACTTCATCCTCAAGCTGCTCACGGCGCGCCAGTTCGTGGACGAGCCG CGCATCTACTTCCCGCACAACATGGACTTCCGCGGCCGCGTCTACCCCAT TCCGCCGCACCTCAACCACATGGGCGCAGACATCTCGCGCGGCATGCTCG AGTTCGCCGAGGTCAGGCCGCTGGGCGCGCGCGGCCTCTACTGGCTCAAG GTGCACGTGGCCAACCTCTGCGGCAAGAACAAGGTGCCCTTCGACGAGCG CGTGGCCTTTGCCGACGCCCACCTCGCCGACATCCTCGACAGCGCCGCGG CGCCGCTCGAGGGCCGCCGCTGGTGGCTCAAGGCGGCCGAGGACCACTGG CAGTGCCTCGCCGCCTGCCTCGAGATCTCGGACGCGCTGGCGTCGGGCGA CGCGGCGGCGTTCGTGAGCCGGCTGCCCACGCACATGGACGGCTCGTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93461:53..751+

>mRNA_M-pyrifera_M_contig93461.21581.1 ID=mRNA_M-pyrifera_M_contig93461.21581.1|Name=mRNA_M-pyrifera_M_contig93461.21581.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1398bp|location=Sequence derived from alignment at M-pyrifera_M_contig93461:53..751+ (Macrocystis pyrifera P11B4 male)
GACCTCTCGCGCGTCTACCACGTGCTGGACGTGCTGGGCGAGGTGCCCTG
GCGCATCAACCGCCGCCTCTTCGCCGTCATGGAGCAGTGCTGGGCGGCGG
GCGGCAACTTCCCCTACGTCCCCGCCCGCGCCAACGCCGCATTCCCCGCG
CCGCCGGCCGACGCGCGCACCAACGCAGAGGCGCGCGGCCTCTGGCGCAA
GGACCGCGCCAAGGTCGCGCAGAAGAACAAGGAGCTCCACTCGCTGCGCT
GCGACTTCATCCTCAAGCTGCTCACGGCGCGCCAGTTCGTGGACGAGCCG
CGCATCTACTTCCCGCACAACATGGACTTCCGCGGCCGCGTCTACCCCAT
TCCGCCGCACCTCAACCACATGGGCGCAGACATCTCGCGCGGCATGCTCG
AGTTCGCCGAGGTCAGGCCGCTGGGCGCGCGCGGCCTCTACTGGCTCAAG
GTGCACGTGGCCAACCTCTGCGGCAAGAACAAGGTGCCCTTCGACGAGCG
CGTGGCCTTTGCCGACGCCCACCTCGCCGACATCCTCGACAGCGCCGCGG
CGCCGCTCGAGGGCCGCCGCTGGTGGCTCAAGGCGGCCGAGGACCACTGG
CAGTGCCTCGCCGCCTGCCTCGAGATCTCGGACGCGCTGGCGTCGGGCGA
CGCGGCGGCGTTCGTGAGCCGGCTGCCCACGCACATGGACGGCTCGTGCG
ACCTCTCGCGCGTCTACCACGTGCTGGACGTGCTGGGCGAGGTGCCCTGG
CGCATCAACCGCCGCCTCTTCGCCGTCATGGAGCAGTGCTGGGCGGCGGG
CGGCAACTTCCCCTACGTCCCCGCCCGCGCCAACGCCGCATTCCCCGCGC
CGCCGGCCGACGCGCGCACCAACGCAGAGGCGCGCGGCCTCTGGCGCAAG
GACCGCGCCAAGGTCGCGCAGAAGAACAAGGAGCTCCACTCGCTGCGCTG
CGACTTCATCCTCAAGCTGCTCACGGCGCGCCAGTTCGTGGACGAGCCGC
GCATCTACTTCCCGCACAACATGGACTTCCGCGGCCGCGTCTACCCCATT
CCGCCGCACCTCAACCACATGGGCGCAGACATCTCGCGCGGCATGCTCGA
GTTCGCCGAGGTCAGGCCGCTGGGCGCGCGCGGCCTCTACTGGCTCAAGG
TGCACGTGGCCAACCTCTGCGGCAAGAACAAGGTGCCCTTCGACGAGCGC
GTGGCCTTTGCCGACGCCCACCTCGCCGACATCCTCGACAGCGCCGCGGC
GCCGCTCGAGGGCCGCCGCTGGTGGCTCAAGGCGGCCGAGGACCACTGGC
AGTGCCTCGCCGCCTGCCTCGAGATCTCGGACGCGCTGGCGTCGGGCGAC
GCGGCGGCGTTCGTGAGCCGGCTGCCCACGCACATGGACGGCTCGTGC
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