mRNA_M-pyrifera_M_contig9341.21570.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9341.21570.1
Unique NamemRNA_M-pyrifera_M_contig9341.21570.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9341.21570.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 5.100e-78
Identity = 212/413 (51.33%), Postives = 242/413 (58.60%), Query Frame = 1 
Query:    1 ERLDQHPPPVGTDFGAIARINFSVRCADIRAGMRQFPLPLFSCETVSAGGAAMGAWARAPLE----LAGVKHAVIADKGLRNGVAAAFPVGSAMEASRPGGLDGTDGCGGGLVAVMTRDLPAKAYLDLSVCLERPRFEYSPAHTYALVDMANAGKLLMPRGLFKQVASARTGLTGPTSAGDGAG---VPPLAWWDTARCMVHGKFDATVFGGARHASDGXXXXXXVAAFAPPAVGSVAGASPGSASV-SSSGTRVSWRTSTSTLRRDRGGSGGLHXXXXXXXXXXXXXXXXXXXXXXXXXXSAEEGAWDRGGRFPSAS-----------SRGHXXXXXXXXXXXXXXXXXXXXXGSVLKELQEGKVLAATFAVLRVGWAGAGRLALEVTGFGLEASPSPAPGLPPFLELPTLR 1182
            +RLD+HPPPVGT FG +AR+ FSVRC++I   +RQF  PLFSCE VSAGG AM A ARAP      L GVK  VI ++                + + P  + G  G G G VAV+TRDLP K YLDLSVC+ERPRFE+SPAHTYAL D+A+A  LL+P  LF QVA        P S G G G   VPPLAWWD  RCMVHGKFDATVFG     + G       +   P   GS   ASPGS+S+ +SSG R+SW+ S    RRDR GS    XXXXXXX                     E      GGR  S                     XXXXXXXXXXXXXXX  G  L+ L++GK L  T  VLRVGWAGAGR+ALE TGFG+EASP PAPGLPP  ELPTLR
Sbjct: 1976 DRLDRHPPPVGTGFGVLARLGFSVRCSNIVTSLRQFDQPLFSCERVSAGGVAMVACARAPPHSGGSLTGVKVVVIDEREAXXXXXXXXXXXRGRQHAAPSEVAG--GGGRGKVAVVTRDLPPKVYLDLSVCVERPRFEFSPAHTYALADLASAATLLLPPNLFPQVA--------PGSRGTGTGRDVVPPLAWWDAGRCMVHGKFDATVFGAPATTAPGGGRPAGQSGTVP---GS-GNASPGSSSLPTSSGHRLSWK-SGGVWRRDRRGSXXXXXXXXXXXVDEGDSFGSMRSSSPPFP---EVVGISGGGRRHSGPVGVXXXXXXXXXXAFGVGDXXXXXXXXXXXXXXXSRGEGLEGLEKGKTLMVTCVVLRVGWAGAGRVALETTGFGVEASPPPAPGLPPLFELPTLR 2370
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9341.21570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7K0_ECTSI5.100e-7851.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9341contigM-pyrifera_M_contig9341:292..3223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1197
Cds size1197
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9341.21570.1prot_M-pyrifera_M_contig9341.21570.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9341 292..3223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816846.2964022-CDS-M-pyrifera_M_contig9341:291..3651622816846.2964022-CDS-M-pyrifera_M_contig9341:291..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9341 292..365 +
1692278212.804489-CDS-M-pyrifera_M_contig9341:291..3651692278212.804489-CDS-M-pyrifera_M_contig9341:291..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9341 292..365 +
1622816846.3098795-CDS-M-pyrifera_M_contig9341:1079..13621622816846.3098795-CDS-M-pyrifera_M_contig9341:1079..1362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9341 1080..1362 +
1692278212.821042-CDS-M-pyrifera_M_contig9341:1079..13621692278212.821042-CDS-M-pyrifera_M_contig9341:1079..1362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9341 1080..1362 +
1622816846.3259883-CDS-M-pyrifera_M_contig9341:1761..20261622816846.3259883-CDS-M-pyrifera_M_contig9341:1761..2026Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9341 1762..2026 +
1692278212.838463-CDS-M-pyrifera_M_contig9341:1761..20261692278212.838463-CDS-M-pyrifera_M_contig9341:1761..2026Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9341 1762..2026 +
1622816846.3397787-CDS-M-pyrifera_M_contig9341:2648..32231622816846.3397787-CDS-M-pyrifera_M_contig9341:2648..3223Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9341 2649..3223 +
1692278212.8500397-CDS-M-pyrifera_M_contig9341:2648..32231692278212.8500397-CDS-M-pyrifera_M_contig9341:2648..3223Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9341 2649..3223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9341.21570.1

>prot_M-pyrifera_M_contig9341.21570.1 ID=prot_M-pyrifera_M_contig9341.21570.1|Name=mRNA_M-pyrifera_M_contig9341.21570.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=399bp
ERLDQHPPPVGTDFGAIARINFSVRCADIRAGMRQFPLPLFSCETVSAGG
AAMGAWARAPLELAGVKHAVIADKGLRNGVAAAFPVGSAMEASRPGGLDG
TDGCGGGLVAVMTRDLPAKAYLDLSVCLERPRFEYSPAHTYALVDMANAG
KLLMPRGLFKQVASARTGLTGPTSAGDGAGVPPLAWWDTARCMVHGKFDA
TVFGGARHASDGGGGGGGVAAFAPPAVGSVAGASPGSASVSSSGTRVSWR
TSTSTLRRDRGGSGGLHRGGGGGGGSGGGGGGGSGGGSGGLSGSAEEGAW
DRGGRFPSASSRGHRSGSGSFGGSRHRASGSSGGGGSVLKELQEGKVLAA
TFAVLRVGWAGAGRLALEVTGFGLEASPSPAPGLPPFLELPTLRRGGG*
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mRNA from alignment at M-pyrifera_M_contig9341:292..3223+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9341.21570.1 ID=mRNA_M-pyrifera_M_contig9341.21570.1|Name=mRNA_M-pyrifera_M_contig9341.21570.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2932bp|location=Sequence derived from alignment at M-pyrifera_M_contig9341:292..3223+ (Macrocystis pyrifera P11B4 male)
GAGCGGCTGGATCAGCACCCGCCCCCGGTCGGCACGGACTTCGGCGCCAT
TGCAAGGATTAACTTTTCCGTGAGGTACTGACTGTCCTCACTTTGGCGGC
CGTTTTCCTGTCCCTTTTTGTTTTCGTTTTTTTTTTTTGCATGGGCCGAG
ACGAGTGGTCGCTGTCGGGTGGATATTCATGCGGGCTACGAGTCGGCCTG
TTTGCTTGTTCGGATGAACTATCTGTATGTTGAATGGTTCGAAACGACTG
CTTTTGCTGGTTCAATCGTGTTTGGTTCTGGAGGCAGAGATTGAACTGTT
AAGAAACACACCTCGCAGAGTTTGAACGGACTTGATTGTACTGCCTATAG
TCCACTGTTAGTGTCTATGGACGCGCTGTTGCCAACCCGAAGATTCGACG
CGGCGGTAGCAGCAGTAGCAGTAGCAGTAGCAGGGGGGCTAGCTGGGAAG
ACACCACCCACCCACGCACCAACCCCAATAACGTTTCTGGCAGCAGCATG
CCAAAAGGAAGGGTACATTATTCTCACGAACCCGCGTCGCAGAAAGAAGA
GAGATGTGTTTCATGCCATCAAATAGAGGAGAACATCATCTTTTCCTCCC
TACTTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAATGGCCCCTCTTCCCGCGCACTAGGCAGGGCTACCGA
AGGAAAAGGTGTACGTCACGCACAGCCCCTCTCCACCTGCTTTCTCCGCC
CTCCTCCGCCCACACCCGCGCCCCCCTACCGAAAACAGGTGCGCGGACAT
ACGGGCCGGCATGCGGCAGTTCCCCCTCCCGCTCTTCTCCTGCGAAACCG
TTTCTGCCGGGGGCGCCGCCATGGGGGCCTGGGCCAGAGCCCCCCTTGAA
CTTGCTGGCGTCAAACACGCCGTCATCGCTGACAAGGGGCTCCGCAACGG
CGTGGCTGCTGCTTTTCCCGTCGGTTCGGCGATGGAGGCGTCGAGGCCGG
GCGGCCTTGACGGTACTGACGGCTGCGGTGGTGGACTTGTCGCAGTGATG
ACCCGCGACCTCCCGGCGAAGGTGGGGGCGGGCAGGCGCGGCAGAGTTTT
TTTGTTCGAGCGATCCGATTGATTGGACACCGGCCCCATGCGCCCCGTCT
GTTCCGTACCTGGTATGTATTAGTCGTTGTCCGTTGCCTCTTCTACGACT
GCTGCGAGAGCAGACCGCTTTGTAACTCCGGGGAGGCGGGCGTCGACTGT
TTTCGAGCGGTCGACGACGCTTCCGTTTTTCAAGCGGTTCAAGCGTGCGT
CGAGAGCGGCCTCGGCGTGGCACAACGGAACATACCGCGGCGGTACCCTC
TCCTGTGCGGCGAAATACGAGACTCTCGATTCTTGCACCTCCCGCCCTCC
ACCCTCCCACCTCCTACCTCCCATCCCCCATCGCCTCGATGCCGCCTCGC
TTGCAATACCGCCGTCGCAGGCGTACCTTGACTTGTCGGTGTGCCTTGAG
CGGCCACGGTTCGAGTACAGCCCCGCCCACACCTACGCTCTCGTGGACAT
GGCAAACGCAGGAAAGCTGTTGATGCCTCGGGGTCTCTTCAAGCAGGTAG
CGTCGGCTAGGACGGGGCTGACGGGACCGACTTCGGCAGGGGACGGGGCG
GGCGTGCCCCCCCTGGCTTGGTGGGACACGGCGAGGTGCATGGTGCACGG
GAAGTTCGACGCGACGGTTTTCGGAGGTGCGAGGCGTTTTATTGACGGGG
CCGGGGTAGTTGCCGTTGGGAGCTTGCTTCTCCTTCGCGGTTTGTGTTTA
TAGCCATCCGCGAGAAAATTAAAAAACAAGGACGCTATCGTAGGGCCAGT
CCTCCGGGGGGAGAGGGAAGGAGTCTGCACGCACGCACCCATGCACGCCA
GCGCCTGATGCACGCGTTTGTTCGACTGATACATGCGATTGACTGTGAGT
ACAGACCTTCGGAGATGCATTCAGGGGATCGTTGGGCTGTCCGATGTTCA
GAAATCGCCGGGCTTTGCCAAACTCTTCCCCCCCCCCACCCCCCCCCCCC
GCTCCCCCCGCTTTTGTGCTTAGACACGACTCCCGCCCCCACCCCCCTCT
TTTCGCTCCGTCCCTGATCTGACTCACGACCTGACCGCCTCGATTTATCT
CGGTGAACCATTTTCGAGCTGCAGGCGCCGCTCTTTTAGTGGCGAACGCT
CAATGCGCCCCCCCGTCCACGCGCCTCCCATCTCGCCAAGTTTTGGCCGC
CGTCGCCGCCGCCGCTATGGCCTCCGACCCTTCCGGCATCCCCACGGTGG
GCTCACCCGGCGCTCCTTTCGGCAAGCATCCGAGCCGCGGCTCCTTCCTC
CCGGAAGACGCAAGCGATGGCGGGGGTGGTGGTGGTGGTGTCGCCGCTTT
CGCCCCCCCTGCGGTGGGGAGCGTGGCCGGAGCGAGCCCAGGCTCGGCGT
CGGTATCGTCCTCCGGAACTCGTGTTTCGTGGAGAACTAGCACCTCTACT
CTGCGGAGGGACCGAGGAGGCAGCGGGGGCTTACATCGCGGAGGCGGCGG
CGGGGGCGGCAGTGGTGGTGGTGGTGGTGGTGGCAGCGGTGGCGGTAGCG
GTGGCTTGAGTGGCTCGGCCGAAGAGGGCGCGTGGGATAGAGGCGGGAGG
TTCCCTTCCGCGTCTTCGCGAGGCCACCGCTCGGGTAGCGGCAGCTTTGG
GGGAAGCCGCCATCGCGCCTCGGGTAGTAGTGGGGGCGGCGGAAGCGTCC
TGAAAGAGCTGCAGGAGGGGAAGGTGCTAGCTGCGACCTTTGCCGTGCTG
AGGGTTGGATGGGCGGGGGCCGGGCGCTTGGCTCTGGAGGTGACGGGGTT
TGGGCTGGAGGCGTCGCCGTCGCCTGCGCCGGGGTTGCCCCCGTTTCTGG
AGCTACCCACGCTCAGGCGAGGAGGAGGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9341:292..3223+

>mRNA_M-pyrifera_M_contig9341.21570.1 ID=mRNA_M-pyrifera_M_contig9341.21570.1|Name=mRNA_M-pyrifera_M_contig9341.21570.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2394bp|location=Sequence derived from alignment at M-pyrifera_M_contig9341:292..3223+ (Macrocystis pyrifera P11B4 male)
GAGCGGCTGGATCAGCACCCGCCCCCGGTCGGCACGGACTTCGGCGCCAT
TGCAAGGATTAACTTTTCCGTGAGGAGCGGCTGGATCAGCACCCGCCCCC
GGTCGGCACGGACTTCGGCGCCATTGCAAGGATTAACTTTTCCGTGAGGT
GCGCGGACATACGGGCCGGCATGCGGCAGTTCCCCCTCCCGCTCTTCTCC
TGCGAAACCGTTTCTGCCGGGGGCGCCGCCATGGGGGCCTGGGCCAGAGC
CCCCCTTGAACTTGCTGGCGTCAAACACGCCGTCATCGCTGACAAGGGGC
TCCGCAACGGCGTGGCTGCTGCTTTTCCCGTCGGTTCGGCGATGGAGGCG
TCGAGGCCGGGCGGCCTTGACGGTACTGACGGCTGCGGTGGTGGACTTGT
CGCAGTGATGACCCGCGACCTCCCGGCGAAGGTGCGCGGACATACGGGCC
GGCATGCGGCAGTTCCCCCTCCCGCTCTTCTCCTGCGAAACCGTTTCTGC
CGGGGGCGCCGCCATGGGGGCCTGGGCCAGAGCCCCCCTTGAACTTGCTG
GCGTCAAACACGCCGTCATCGCTGACAAGGGGCTCCGCAACGGCGTGGCT
GCTGCTTTTCCCGTCGGTTCGGCGATGGAGGCGTCGAGGCCGGGCGGCCT
TGACGGTACTGACGGCTGCGGTGGTGGACTTGTCGCAGTGATGACCCGCG
ACCTCCCGGCGAAGGCGTACCTTGACTTGTCGGTGTGCCTTGAGCGGCCA
CGGTTCGAGTACAGCCCCGCCCACACCTACGCTCTCGTGGACATGGCAAA
CGCAGGAAAGCTGTTGATGCCTCGGGGTCTCTTCAAGCAGGTAGCGTCGG
CTAGGACGGGGCTGACGGGACCGACTTCGGCAGGGGACGGGGCGGGCGTG
CCCCCCCTGGCTTGGTGGGACACGGCGAGGTGCATGGTGCACGGGAAGTT
CGACGCGACGGTTTTCGGAGGTGCGAGGCGCGTACCTTGACTTGTCGGTG
TGCCTTGAGCGGCCACGGTTCGAGTACAGCCCCGCCCACACCTACGCTCT
CGTGGACATGGCAAACGCAGGAAAGCTGTTGATGCCTCGGGGTCTCTTCA
AGCAGGTAGCGTCGGCTAGGACGGGGCTGACGGGACCGACTTCGGCAGGG
GACGGGGCGGGCGTGCCCCCCCTGGCTTGGTGGGACACGGCGAGGTGCAT
GGTGCACGGGAAGTTCGACGCGACGGTTTTCGGAGGTGCGAGGCACGCAA
GCGATGGCGGGGGTGGTGGTGGTGGTGTCGCCGCTTTCGCCCCCCCTGCG
GTGGGGAGCGTGGCCGGAGCGAGCCCAGGCTCGGCGTCGGTATCGTCCTC
CGGAACTCGTGTTTCGTGGAGAACTAGCACCTCTACTCTGCGGAGGGACC
GAGGAGGCAGCGGGGGCTTACATCGCGGAGGCGGCGGCGGGGGCGGCAGT
GGTGGTGGTGGTGGTGGTGGCAGCGGTGGCGGTAGCGGTGGCTTGAGTGG
CTCGGCCGAAGAGGGCGCGTGGGATAGAGGCGGGAGGTTCCCTTCCGCGT
CTTCGCGAGGCCACCGCTCGGGTAGCGGCAGCTTTGGGGGAAGCCGCCAT
CGCGCCTCGGGTAGTAGTGGGGGCGGCGGAAGCGTCCTGAAAGAGCTGCA
GGAGGGGAAGGTGCTAGCTGCGACCTTTGCCGTGCTGAGGGTTGGATGGG
CGGGGGCCGGGCGCTTGGCTCTGGAGGTGACGGGGTTTGGGCTGGAGGCG
TCGCCGTCGCCTGCGCCGGGGTTGCCCCCGTTTCTGGAGCTACCCACGCT
CAGGCGAGGAGGAGGTTGAACGCAAGCGATGGCGGGGGTGGTGGTGGTGG
TGTCGCCGCTTTCGCCCCCCCTGCGGTGGGGAGCGTGGCCGGAGCGAGCC
CAGGCTCGGCGTCGGTATCGTCCTCCGGAACTCGTGTTTCGTGGAGAACT
AGCACCTCTACTCTGCGGAGGGACCGAGGAGGCAGCGGGGGCTTACATCG
CGGAGGCGGCGGCGGGGGCGGCAGTGGTGGTGGTGGTGGTGGTGGCAGCG
GTGGCGGTAGCGGTGGCTTGAGTGGCTCGGCCGAAGAGGGCGCGTGGGAT
AGAGGCGGGAGGTTCCCTTCCGCGTCTTCGCGAGGCCACCGCTCGGGTAG
CGGCAGCTTTGGGGGAAGCCGCCATCGCGCCTCGGGTAGTAGTGGGGGCG
GCGGAAGCGTCCTGAAAGAGCTGCAGGAGGGGAAGGTGCTAGCTGCGACC
TTTGCCGTGCTGAGGGTTGGATGGGCGGGGGCCGGGCGCTTGGCTCTGGA
GGTGACGGGGTTTGGGCTGGAGGCGTCGCCGTCGCCTGCGCCGGGGTTGC
CCCCGTTTCTGGAGCTACCCACGCTCAGGCGAGGAGGAGGTTGA
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