mRNA_M-pyrifera_M_contig93397.21564.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93397.21564.1
Unique NamemRNA_M-pyrifera_M_contig93397.21564.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93397.21564.1 vs. uniprot
Match: A0A7S4T194_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4T194_9DINO)

HSP 1 Score: 56.6 bits (135), Expect = 1.030e-6
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  175 HFAAEGGAFEAAKVLLAHKVSISHQDSEGNTPLHLVTCARVAELLLEHGSRASSRNSPKRQTPLHNAVIADR 390
            H AA  GA   A VLL    S+  +D  G TP+HLV+ A +AELLL+ G+R    N+  +  PLH+A +A R
Sbjct:  489 HVAAAQGALPEASVLLEAGASLEAKDYYGQTPMHLVSTAAMAELLLQFGARPLPTNAGLQ--PLHSAALAGR 558
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BLAST of mRNA_M-pyrifera_M_contig93397.21564.1 vs. uniprot
Match: A0A6P6RR04_9EIME (acyl-CoA-binding domain-containing protein 2 n=2 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P6RR04_9EIME)

HSP 1 Score: 55.8 bits (133), Expect = 1.610e-6
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:   61 DLFLTKVDPPTTGRRSGRSGLRRRIPIQSPTPDG-RNALHFAAEGGAFEAAKVLLAHKVSISHQDSEGNTPLHLVTCAR---VAELLLEHGSRASSRNS 345
            D F  +V    T  ++  + LR    + S T DG   ALHFAA+ G  + AK+LLAH   +++QD  G TPLH+   A    +  LL + G+  + +NS
Sbjct:  218 DAFCCQVASGDT--KAVEAALRENRSLVSATGDGGMTALHFAADRGHLDIAKMLLAHGADVNYQDDLGETPLHVAIAAEQMDMVALLRKAGANMALKNS 314
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BLAST of mRNA_M-pyrifera_M_contig93397.21564.1 vs. uniprot
Match: A0A812SI95_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812SI95_9DINO)

HSP 1 Score: 53.1 bits (126), Expect = 1.770e-5
Identity = 34/93 (36.56%), Postives = 47/93 (50.54%), Query Frame = 1 
Query:   22 LHIAAQHNHAAICDLFLTKVDPPTTGRRSGRSG-------LRRRIP--IQSPTPDGRNALHFAAEGGAFEAAKVLLAHKVSISHQDSEGNTPL 273
            L IAA+ NH  +    L K++  TT      +G       L +++P  I +  PDGR ALH AAE G  E+ +VLL  K  +   D  G +PL
Sbjct:  952 LDIAAKQNHTNLVQHLLPKIEDKTTALFWAAAGYPKLVEQLLQKVPSSIAAKQPDGRTALHHAAEAGDVESLRVLLRWKADLGSLDVYGASPL 1044
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BLAST of mRNA_M-pyrifera_M_contig93397.21564.1 vs. uniprot
Match: A0A1Q9E8K8_SYMMI (Anaphase-promoting complex subunit 11 n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E8K8_SYMMI)

HSP 1 Score: 51.6 bits (122), Expect = 6.240e-5
Identity = 33/93 (35.48%), Postives = 46/93 (49.46%), Query Frame = 1 
Query:   22 LHIAAQHNHAAICDLFLTKVDPPTTGRRSGRSG-------LRRRIP--IQSPTPDGRNALHFAAEGGAFEAAKVLLAHKVSISHQDSEGNTPL 273
            L IAA+ NH  +    L K++  TT      +G       L +++P  I +  PDGR ALH AAE G   + +VLL  K  +   D  G +PL
Sbjct: 3974 LDIAAKQNHTNLVQRLLPKIEDKTTALFWAAAGYPKIVEQLLQKVPSSIAAKQPDGRTALHHAAEAGDVRSLRVLLRWKADLGSLDVYGASPL 4066
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93397.21564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S4T194_9DINO1.030e-644.44Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A6P6RR04_9EIME1.610e-636.36acyl-CoA-binding domain-containing protein 2 n=2 T... [more]
A0A812SI95_9DINO1.770e-536.56Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
A0A1Q9E8K8_SYMMI6.240e-535.48Anaphase-promoting complex subunit 11 n=2 Tax=Symb... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93397contigM-pyrifera_M_contig93397:3..395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.910084-CDS-M-pyrifera_M_contig93397:2..3951622816845.910084-CDS-M-pyrifera_M_contig93397:2..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93397 3..395 -
1692278212.5784538-CDS-M-pyrifera_M_contig93397:2..3951692278212.5784538-CDS-M-pyrifera_M_contig93397:2..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93397 3..395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93397.21564.1prot_M-pyrifera_M_contig93397.21564.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93397 3..395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93397.21564.1

>prot_M-pyrifera_M_contig93397.21564.1 ID=prot_M-pyrifera_M_contig93397.21564.1|Name=mRNA_M-pyrifera_M_contig93397.21564.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
VTNPFSPLHIAAQHNHAAICDLFLTKVDPPTTGRRSGRSGLRRRIPIQSP
TPDGRNALHFAAEGGAFEAAKVLLAHKVSISHQDSEGNTPLHLVTCARVA
ELLLEHGSRASSRNSPKRQTPLHNAVIADRL
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mRNA from alignment at M-pyrifera_M_contig93397:3..395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93397.21564.1 ID=mRNA_M-pyrifera_M_contig93397.21564.1|Name=mRNA_M-pyrifera_M_contig93397.21564.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig93397:3..395- (Macrocystis pyrifera P11B4 male)
GTGACCAATCCTTTCTCCCCACTGCATATTGCTGCACAGCACAATCATGC
AGCCATCTGTGATCTTTTCCTCACAAAAGTAGACCCGCCGACGACAGGAA
GGAGGAGTGGGAGGAGCGGCCTGCGGAGAAGGATTCCGATTCAATCCCCG
ACCCCCGATGGGAGAAACGCCCTTCACTTTGCCGCAGAAGGTGGAGCTTT
TGAAGCCGCCAAGGTCCTCCTCGCGCACAAAGTCTCCATCTCTCATCAAG
ACAGCGAAGGCAATACTCCTCTTCACCTCGTGACTTGCGCAAGGGTAGCA
GAACTGCTTCTTGAACATGGGTCTCGCGCCTCGTCGCGAAATTCTCCCAA
ACGCCAAACTCCGCTGCACAACGCAGTCATTGCCGATAGGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93397:3..395-

>mRNA_M-pyrifera_M_contig93397.21564.1 ID=mRNA_M-pyrifera_M_contig93397.21564.1|Name=mRNA_M-pyrifera_M_contig93397.21564.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig93397:3..395- (Macrocystis pyrifera P11B4 male)
GTGACCAATCCTTTCTCCCCACTGCATATTGCTGCACAGCACAATCATGC
AGCCATCTGTGATCTTTTCCTCACAAAAGTAGACCCGCCGACGACAGGAA
GGAGGAGTGGGAGGAGCGGCCTGCGGAGAAGGATTCCGATTCAATCCCCG
ACCCCCGATGGGAGAAACGCCCTTCACTTTGCCGCAGAAGGTGGAGCTTT
TGAAGCCGCCAAGGTCCTCCTCGCGCACAAAGTCTCCATCTCTCATCAAG
ACAGCGAAGGCAATACTCCTCTTCACCTCGTGACTTGCGCAAGGGTAGCA
GAACTGCTTCTTGAACATGGGTCTCGCGCCTCGTCGCGAAATTCTCCCAA
ACGCCAAACTCCGCTGCACAACGCAGTCATTGCCGATAGGCTTGTGACCA
ATCCTTTCTCCCCACTGCATATTGCTGCACAGCACAATCATGCAGCCATC
TGTGATCTTTTCCTCACAAAAGTAGACCCGCCGACGACAGGAAGGAGGAG
TGGGAGGAGCGGCCTGCGGAGAAGGATTCCGATTCAATCCCCGACCCCCG
ATGGGAGAAACGCCCTTCACTTTGCCGCAGAAGGTGGAGCTTTTGAAGCC
GCCAAGGTCCTCCTCGCGCACAAAGTCTCCATCTCTCATCAAGACAGCGA
AGGCAATACTCCTCTTCACCTCGTGACTTGCGCAAGGGTAGCAGAACTGC
TTCTTGAACATGGGTCTCGCGCCTCGTCGCGAAATTCTCCCAAACGCCAA
ACTCCGCTGCACAACGCAGTCATTGCCGATAGGCTT
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