mRNA_M-pyrifera_M_contig93386.21562.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93386.21562.1
Unique NamemRNA_M-pyrifera_M_contig93386.21562.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93386.21562.1 vs. uniprot
Match: A0A6J3EE78_AYTFU (nucleoside diphosphate-linked moiety X motif 17 n=1 Tax=Aythya fuligula TaxID=219594 RepID=A0A6J3EE78_AYTFU)

HSP 1 Score: 107 bits (268), Expect = 1.880e-25
Identity = 62/153 (40.52%), Postives = 87/153 (56.86%), Query Frame = 1
Query:    1 VLGHAKRCPAMEMQQQAIPVQIDPARPNQK-VAVACCVVLERKDPKTGMPQVLVTRRHPLMRAFPFIWVFPGGHVDPHEQLWQAGLRELKEETGIEVSAARDALHLLGFWESIYPSRLEVGPLRKQHLVAFFHYRLPDDLSEVDVKFCPVEVD 456
            +LG    CPA  ++ +A       A P  + V  A  V+L+     TG   VL+TRR   +R FP +WV PGGHV+P E+L   GLREL+EETG+ ++A      LLG WES+YP  L  GP R+ H+VA+   R  +   E++ + CP E +
Sbjct:   63 ILGRPPFCPAKLLEPRAA------AEPRGRGVEAAVAVLLQAA---TG--PVLLTRRPHGLRVFPNVWVPPGGHVEPDEELLAVGLRELQEETGLRLAAGTFTWRLLGLWESVYPPMLSRGPPRRHHIVAYLLLRSQEPHEELEARICPSEAE 204          
BLAST of mRNA_M-pyrifera_M_contig93386.21562.1 vs. uniprot
Match: UPI0006E8BE40 (nucleoside diphosphate-linked moiety X motif 17 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI0006E8BE40)

HSP 1 Score: 107 bits (267), Expect = 2.320e-25
Identity = 61/130 (46.92%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 VLGHAKRCPAMEMQQQAIPVQIDPARPNQKVAVACCVVLERKDPKTGMPQVLVTRRHPLMRAFPFIWVFPGGHVDPHEQLWQAGLRELKEETGIEVSAARDALHLLGFWESIYPSRLEVGPLRKQHLVAF 390
            +L HA  CP  +M  +AI   +     ++ V +   V+L   D       VLVTRR P MR FP +WV PGGHV+P E L  AGLRELKEETG+E+       HLLG WES+YP +LE G   +QHLV +
Sbjct:   67 LLRHASECPVYKMTNKAI---LSQETKDKGVGIGVAVLLASLD-----QCVLVTRRAPHMRTFPGVWVPPGGHVEPGETLLAAGLRELKEETGLELKDT--GYHLLGLWESVYPHKLEFGHPLRQHLVIY 186          
BLAST of mRNA_M-pyrifera_M_contig93386.21562.1 vs. uniprot
Match: A0A0B7AVA7_9EUPU (Nudix hydrolase domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7AVA7_9EUPU)

HSP 1 Score: 107 bits (266), Expect = 3.140e-25
Identity = 58/161 (36.02%), Postives = 98/161 (60.87%), Query Frame = 1
Query:    1 VLGHAKRCPAMEMQQQ--AIPVQIDPARPNQKVAVACCVVLERKDPKTGMPQVLVTRRHPLMRAFPFIWVFPGGHVDPHEQLWQAGLRELKEETGIEVSAA---RDALHLLGFWESIYPSRLEVGPLRKQHLVAFFHYRLPDDLS----EVDVKFCPVEVD 456
            V+ H+  CP + +     ++P +I      + V V   +++E  D K     +L++RR   +R FP +WV PGGH++ +E L +AGLRELKEETG+++  +   +  ++L+  WES++P+R+ VGP  + H+V +FH +L ++L+    E  + F PVEVD
Sbjct:   59 VIKHSTCCPMLHLNPDIVSLPKEIS----TRGVDVGVAILVESSDGK-----ILLSRRPLHLRIFPGVWVPPGGHIEENETLLEAGLRELKEETGLDLKPSDCVQQKMNLVALWESVFPARVSVGPPVRHHIVVYFHAKLVEELTTDVMETRINFDPVEVD 210          
BLAST of mRNA_M-pyrifera_M_contig93386.21562.1 vs. uniprot
Match: A0A8J2RDZ4_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RDZ4_9CRUS)

HSP 1 Score: 107 bits (266), Expect = 3.140e-25
Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 VLGHAKRCPAMEMQQQAIPVQIDPARPNQKVAVACCVVLERKDPKTGMPQ-VLVTRRHPLMRAFPFIWVFPGGHVDPHEQLWQAGLRELKEETGIEVSAARDALHLLGFWESIYPSRLEVGPLRKQHLVAF 390
            +L HA  CP  +M  +A    +     ++ V +   ++L      T + Q VLVTRR P MR FP +WV PGGHV+P E L  AGLRELKEETG+E+       HLLG WES+YP +LE G  ++QHLV +
Sbjct:   66 LLRHASECPVYKMTNKA---SLSQESKDRGVGMGVAILL------TSLDQCVLVTRRAPHMRTFPGVWVPPGGHVEPGESLLSAGLRELKEETGLELKDTSH--HLLGLWESVYPHKLEFGDPQRQHLVIY 185          
BLAST of mRNA_M-pyrifera_M_contig93386.21562.1 vs. uniprot
Match: E9GF03_DAPPU (Nudix hydrolase domain-containing protein (Fragment) n=3 Tax=Daphnia TaxID=6668 RepID=E9GF03_DAPPU)

HSP 1 Score: 105 bits (263), Expect = 7.210e-25
Identity = 63/132 (47.73%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 VLGHAKRCPAMEMQQQAIPVQIDPARPNQKVAVACCVVLERKDPKTGMPQ-VLVTRRHPLMRAFPFIWVFPGGHVDPHEQLWQAGLRELKEETGIEVSAARDALH-LLGFWESIYPSRLEVGPLRKQHLVAF 390
            +L HA  CP  +M  +A   Q      ++ V +   ++L      T M Q VLVTRR P MR FP +WV PGGHV+P E L  AGLRELKEETG+E+   RD  H LLG WES+YP +LE G  ++QH+V +
Sbjct:   66 LLKHASECPVHKMTDKASLTQ---ECKDKGVGMGVAILL------TSMDQCVLVTRRAPHMRTFPGVWVPPGGHVEPGETLLTAGLRELKEETGLEI---RDTSHHLLGLWESVYPHKLEFGDPQRQHIVIY 185          
BLAST of mRNA_M-pyrifera_M_contig93386.21562.1 vs. uniprot
Match: A0A8B9T075_ANAPL (Nudix hydrolase 17 n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=A0A8B9T075_ANAPL)

HSP 1 Score: 105 bits (261), Expect = 1.290e-24
Identity = 62/152 (40.79%), Postives = 86/152 (56.58%), Query Frame = 1
Query:    1 VLGHAKRCPAMEMQQQAIPVQIDPARPNQKVAVACCVVLERKDPKTGMPQVLVTRRHPLMRAFPFIWVFPGGHVDPHEQLWQAGLRELKEETGIEVSAARDALHLLGFWESIYPSRLEVGPLRKQHLVAFFHYRLPDDLSEVDVKFCPVEVD 456
            VLG    CPA  +     PV  +P     + AVA  V+L+     TG   +L+TRR   +  FP +WV PGGHV+P E+L   GLREL+EETG+ ++A      LLG WES+YP  L  GP R+ H+VA+   R  +   E++ + CP E +
Sbjct:   39 VLGRPPFCPAKLL---GSPVAAEPRGRGVEAAVA--VLLQAA---TG--PLLLTRRPHGLSIFPNVWVPPGGHVEPDEELLAVGLRELQEETGLRLAAGTFTWRLLGLWESVYPPMLSRGPPRRHHIVAYLLLRSQEPHEELEARICPSEAE 180          
BLAST of mRNA_M-pyrifera_M_contig93386.21562.1 vs. uniprot
Match: UPI00201F4D4C (nucleoside diphosphate-linked moiety X motif 17-like isoform X1 n=4 Tax=Haliotis TaxID=6452 RepID=UPI00201F4D4C)

HSP 1 Score: 105 bits (262), Expect = 1.400e-24
Identity = 61/158 (38.61%), Postives = 91/158 (57.59%), Query Frame = 1
Query:    4 LGHAKRCPAMEMQQQAIPVQIDPARPNQKVAVACCVVLERKDPKTGMPQVLVTRRHPLMRAFPFIWVFPGGHVDPHEQLWQAGLRELKEETGIEVSAAR---DALHLLGFWESIYPSRLEVGPLRKQHLVAFFHYRLPDDLSE----VDVKFCPVEVD 456
            L H   CP + +  + +   + P   N+ V V   VV+E     TG  +VL+TRR   +RAFP IWV PGGH++ +E   +AGLRE  EETG+++ A++   + LHLL  WES+YP +L  G  ++ H+V + + +L  DL+       +K  P EVD
Sbjct:   69 LKHPPFCPVLHLTPEDV-AALPPETANRGVDVGAAVVME-----TGDGKVLLTRRAKHLRAFPGIWVPPGGHIEENETFVEAGLREFGEETGLQLQASQCVGNQLHLLALWESVYPPKLSHGLPKRHHMVVYLYGKLISDLTSDKLTSQLKMQPEEVD 220          
BLAST of mRNA_M-pyrifera_M_contig93386.21562.1 vs. uniprot
Match: A0A8B9T019_ANAPL (Nudix hydrolase 17 n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=A0A8B9T019_ANAPL)

HSP 1 Score: 105 bits (261), Expect = 1.530e-24
Identity = 62/152 (40.79%), Postives = 86/152 (56.58%), Query Frame = 1
Query:    1 VLGHAKRCPAMEMQQQAIPVQIDPARPNQKVAVACCVVLERKDPKTGMPQVLVTRRHPLMRAFPFIWVFPGGHVDPHEQLWQAGLRELKEETGIEVSAARDALHLLGFWESIYPSRLEVGPLRKQHLVAFFHYRLPDDLSEVDVKFCPVEVD 456
            VLG    CPA  +     PV  +P     + AVA  V+L+     TG   +L+TRR   +  FP +WV PGGHV+P E+L   GLREL+EETG+ ++A      LLG WES+YP  L  GP R+ H+VA+   R  +   E++ + CP E +
Sbjct:   34 VLGRPPFCPAKLL---GSPVAAEPRGRGVEAAVA--VLLQAA---TG--PLLLTRRPHGLSIFPNVWVPPGGHVEPDEELLAVGLRELQEETGLRLAAGTFTWRLLGLWESVYPPMLSRGPPRRHHIVAYLLLRSQEPHEELEARICPSEAE 175          
BLAST of mRNA_M-pyrifera_M_contig93386.21562.1 vs. uniprot
Match: A0A7K9UZZ9_ANSSE (NUD17 protein (Fragment) n=1 Tax=Anseranas semipalmata TaxID=8851 RepID=A0A7K9UZZ9_ANSSE)

HSP 1 Score: 102 bits (253), Expect = 8.440e-24
Identity = 55/143 (38.46%), Postives = 81/143 (56.64%), Query Frame = 1
Query:   22 CPAMEMQQQAIPVQIDPARPNQKVAVACCVVLERKDPKTGMPQVLVTRRHPLMRAFPFIWVFPGGHVDPHEQLWQAGLRELKEETGIEVSAARDALHLLGFWESIYPSRLEVGPLRKQHLVAFFHYRLPDDLSEVDVKFCPVE 450
            CPA  +Q+Q  P      R  + V     V+L+     TG  ++L+TRR   +R FP +WV PGGHV+P E+L   GLREL+EETG+ + A   +  +LG WES+YP  L  G  R+ H+VA+      +   +++ + CP E
Sbjct:   18 CPAKRLQEQPAPALPAELR-GRGVDAGVAVLLQAS---TG--RILLTRRAATLRIFPNVWVPPGGHVEPDEELLDVGLRELEEETGLRLGAGTFSWRMLGLWESVYPPMLSRGLPRRHHIVAYLLLLSDESHEQLEARICPSE 154          
BLAST of mRNA_M-pyrifera_M_contig93386.21562.1 vs. uniprot
Match: UPI000775F4F8 (nucleoside diphosphate-linked moiety X motif 17 n=1 Tax=Protobothrops mucrosquamatus TaxID=103944 RepID=UPI000775F4F8)

HSP 1 Score: 102 bits (254), Expect = 2.060e-23
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   82 NQKVAVACCVVLERKDPKTGMPQVLVTRRHPLMRAFPFIWVFPGGHVDPHEQLWQAGLRELKEETGIEVSAARDALHLLGFWESIYPSRLEVGPLRKQHLVAFFHYRLPDDLSEVDVKFCPVEVD 456
             Q V V   V+LE  + K     +L+TRR   +R FP  WV PGGH++P E+L +AGLREL+EETG+ +     + HLL  WES+YP RL  G  R+ H+V + H  L +   ++  +  P E +
Sbjct:   95 RQGVDVGVAVLLESANQK-----ILLTRRARTLRLFPNAWVPPGGHIEPEEELLEAGLRELEEETGLRLQDGEFSWHLLALWESVYPPRLSQGLPRRHHIVIYLHLALQESHQQLQARLKPNEAE 214          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93386.21562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J3EE78_AYTFU1.880e-2540.52nucleoside diphosphate-linked moiety X motif 17 n=... [more]
UPI0006E8BE402.320e-2546.92nucleoside diphosphate-linked moiety X motif 17 n=... [more]
A0A0B7AVA7_9EUPU3.140e-2536.02Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A8J2RDZ4_9CRUS3.140e-2545.80Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
E9GF03_DAPPU7.210e-2547.73Nudix hydrolase domain-containing protein (Fragmen... [more]
A0A8B9T075_ANAPL1.290e-2440.79Nudix hydrolase 17 n=1 Tax=Anas platyrhynchos TaxI... [more]
UPI00201F4D4C1.400e-2438.61nucleoside diphosphate-linked moiety X motif 17-li... [more]
A0A8B9T019_ANAPL1.530e-2440.79Nudix hydrolase 17 n=1 Tax=Anas platyrhynchos TaxI... [more]
A0A7K9UZZ9_ANSSE8.440e-2438.46NUD17 protein (Fragment) n=1 Tax=Anseranas semipal... [more]
UPI000775F4F82.060e-2340.80nucleoside diphosphate-linked moiety X motif 17 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93386contigM-pyrifera_M_contig93386:298..753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score103.2
Seed ortholog evalue1e-19
Seed eggNOG ortholog6500.XP_005099436.1
Preferred nameNUDT17
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hydrolase activity
EggNOG OGs28Q4B@1,2QWT5@2759,39XR3@33154,3BC3I@33208,3CWU7@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size426
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.8240604-UTR-M-pyrifera_M_contig93386:297..3271622816845.8240604-UTR-M-pyrifera_M_contig93386:297..327Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93386 298..327 +
1692278212.5441546-UTR-M-pyrifera_M_contig93386:297..3271692278212.5441546-UTR-M-pyrifera_M_contig93386:297..327Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93386 298..327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.8361049-CDS-M-pyrifera_M_contig93386:327..7531622816845.8361049-CDS-M-pyrifera_M_contig93386:327..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93386 328..753 +
1692278212.556423-CDS-M-pyrifera_M_contig93386:327..7531692278212.556423-CDS-M-pyrifera_M_contig93386:327..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93386 328..753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93386.21562.1prot_M-pyrifera_M_contig93386.21562.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93386 328..753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93386.21562.1

>prot_M-pyrifera_M_contig93386.21562.1 ID=prot_M-pyrifera_M_contig93386.21562.1|Name=mRNA_M-pyrifera_M_contig93386.21562.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MEMQQQAIPVQIDPARPNQKVAVACCVVLERKDPKTGMPQVLVTRRHPLM
RAFPFIWVFPGGHVDPHEQLWQAGLRELKEETGIEVSAARDALHLLGFWE
SIYPSRLEVGPLRKQHLVAFFHYRLPDDLSEVDVKFCPVEVD
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mRNA from alignment at M-pyrifera_M_contig93386:298..753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93386.21562.1 ID=mRNA_M-pyrifera_M_contig93386.21562.1|Name=mRNA_M-pyrifera_M_contig93386.21562.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig93386:298..753+ (Macrocystis pyrifera P11B4 male)
GTGCTGGGCCATGCCAAGCGATGCCCTGCCATGGAGATGCAGCAGCAGGC CATTCCCGTGCAGATCGACCCTGCGAGGCCCAACCAGAAGGTAGCGGTTG CCTGTTGTGTAGTCCTGGAGAGGAAGGACCCCAAGACGGGCATGCCCCAG GTGCTGGTCACGCGGCGGCACCCCTTGATGCGTGCCTTTCCCTTCATCTG GGTTTTCCCTGGCGGACACGTTGACCCCCACGAGCAGCTGTGGCAGGCAG GCCTCAGAGAGCTCAAAGAAGAAACTGGCATCGAGGTGTCTGCGGCCAGG GATGCTCTTCACCTCCTTGGCTTCTGGGAGAGCATCTATCCTTCAAGGCT GGAGGTTGGGCCGCTCAGGAAGCAGCACCTGGTCGCCTTCTTCCACTATC GCCTCCCAGACGACCTCTCAGAGGTAGATGTGAAGTTCTGCCCTGTGGAA GTCGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93386:298..753+

>mRNA_M-pyrifera_M_contig93386.21562.1 ID=mRNA_M-pyrifera_M_contig93386.21562.1|Name=mRNA_M-pyrifera_M_contig93386.21562.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig93386:298..753+ (Macrocystis pyrifera P11B4 male)
ATGGAGATGCAGCAGCAGGCCATTCCCGTGCAGATCGACCCTGCGAGGCC
CAACCAGAAGGTAGCGGTTGCCTGTTGTGTAGTCCTGGAGAGGAAGGACC
CCAAGACGGGCATGCCCCAGGTGCTGGTCACGCGGCGGCACCCCTTGATG
CGTGCCTTTCCCTTCATCTGGGTTTTCCCTGGCGGACACGTTGACCCCCA
CGAGCAGCTGTGGCAGGCAGGCCTCAGAGAGCTCAAAGAAGAAACTGGCA
TCGAGGTGTCTGCGGCCAGGGATGCTCTTCACCTCCTTGGCTTCTGGGAG
AGCATCTATCCTTCAAGGCTGGAGGTTGGGCCGCTCAGGAAGCAGCACCT
GGTCGCCTTCTTCCACTATCGCCTCCCAGACGACCTCTCAGAGGTAGATG
TGAAGTTCTGCCCTGTGGAAGTCGATATGGAGATGCAGCAGCAGGCCATT
CCCGTGCAGATCGACCCTGCGAGGCCCAACCAGAAGGTAGCGGTTGCCTG
TTGTGTAGTCCTGGAGAGGAAGGACCCCAAGACGGGCATGCCCCAGGTGC
TGGTCACGCGGCGGCACCCCTTGATGCGTGCCTTTCCCTTCATCTGGGTT
TTCCCTGGCGGACACGTTGACCCCCACGAGCAGCTGTGGCAGGCAGGCCT
CAGAGAGCTCAAAGAAGAAACTGGCATCGAGGTGTCTGCGGCCAGGGATG
CTCTTCACCTCCTTGGCTTCTGGGAGAGCATCTATCCTTCAAGGCTGGAG
GTTGGGCCGCTCAGGAAGCAGCACCTGGTCGCCTTCTTCCACTATCGCCT
CCCAGACGACCTCTCAGAGGTAGATGTGAAGTTCTGCCCTGTGGAAGTCG
AT
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