mRNA_M-pyrifera_M_contig93382.21560.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93382.21560.1
Unique NamemRNA_M-pyrifera_M_contig93382.21560.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93382.21560.1 vs. uniprot
Match: A0A7S1D9Z1_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9Z1_CYCTE)

HSP 1 Score: 177 bits (448), Expect = 1.620e-49
Identity = 91/168 (54.17%), Postives = 115/168 (68.45%), Query Frame = 1 
Query:    1 LRRDLMVMW-NDRTDAGDAALDRLMIALHRLQTEGRVAYRRLLGMHGGGGGTSDADFKARLEAKVQAD-VEANSASDRPTNYYWPSPVPNAAHPQKFTA---SEPFTYTFCWHAEPPFIVWHRALTAEFERLLQTYDPCTEFPEGST-RHSGPGALGIPYWAWEAWDG 486
            +R+ ++ +W ND+ +      DR+ IAL+RLQTEGRVAYRRL+GMHGGGGGTSDA+  A L AK++AD ++ +     P +  WP  VPNAA+P+  T+   +E F YTFCWH   PFIVWHR L AEFER LQ YDP  +    +T +H GP ALG PYW WE WDG
Sbjct:    5 VRKSILTLWKNDQEEC-----DRVYIALYRLQTEGRVAYRRLVGMHGGGGGTSDANHLAYLTAKMEADKLQGHYHDGFPLDTVWPGAVPNAAYPETITSIGTNEAFAYTFCWHGSAPFIVWHRPLMAEFERNLQVYDPKFKDETDTTNQHEGPEALGAPYWGWEGWDG 167
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BLAST of mRNA_M-pyrifera_M_contig93382.21560.1 vs. uniprot
Match: K0THS6_THAOC (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0THS6_THAOC)

HSP 1 Score: 147 bits (372), Expect = 3.390e-42
Identity = 81/163 (49.69%), Postives = 102/163 (62.58%), Query Frame = 1 
Query:    1 LRRDLMVMWN-------DRTDAGDAALDRLMIALHRLQTEGRVAYRRLLGMHGGGGGTSDADFKARLEAKVQADVEANSA--SDRPTNYYWPSPVPNAAHPQKFTASEP---FTYTFCWHAEPPFIVWHRALTAEFERLLQTYDPCTEFPEGSTRHSGPGALG 453
            +RR+++ +W+       D  +   A  DR+ IALHR QTEG+VAYRRLLGMHGGGGGT +  F+  L  KV+ DV +++      P   YWP+PVPNA  P     S+    F YTFCWHAEP FIVWHR + AEFE LLQ YDP  ++ +   RH G  ALG
Sbjct:    4 VRRNIIALWDGQPYNDADERENNWAECDRIFIALHRFQTEGKVAYRRLLGMHGGGGGTGEEKFRDILTDKVEKDVISHTGYGGSFPDGGYWPNPVPNAPSPTLIDVSDKNRCFAYTFCWHAEPEFIVWHRPIMAEFEYLLQGYDP--KYNDDEQRH-GKDALG 163
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BLAST of mRNA_M-pyrifera_M_contig93382.21560.1 vs. uniprot
Match: A0A7S4QPD7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QPD7_9STRA)

HSP 1 Score: 124 bits (311), Expect = 5.900e-30
Identity = 74/165 (44.85%), Postives = 91/165 (55.15%), Query Frame = 1 
Query:   58 LDRLMIALHRLQTEGRVAYRRLLGMHGGGGGTS------DA--------DFKARLEAKVQADVEAN--------SASDRPTNYYWPSPVPNAAHPQKFTASEPFTYTFCWHAEPPFIVWHRALTAEFERLLQTYDPCTEFPEGSTRHSGPGALGIPYWAWEAWDG 486
            LDR MIAL RLQTEGRV YRRL+GMHGGG GTS      DA        +F+  +  KV  D + N        +  D+     WPSP  N    +     E  ++ FCW+ +PPF++WHRA+  EFERLLQ YDP   FP     H G  ALG  Y+ W+ WDG
Sbjct:  170 LDRYMIALLRLQTEGRVDYRRLVGMHGGGFGTSIDKSEIDAWKSSGKTKEFRPLMMVKVDLDKDQNISEVDSKHNTQDKDDKGKWPSPQNNVTPEELKEDQEYLSHIFCWYGQPPFLLWHRAMMVEFERLLQEYDPL--FPHC---HEGSLALGAHYYDWKGWDG 329
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BLAST of mRNA_M-pyrifera_M_contig93382.21560.1 vs. uniprot
Match: A9VCQ6_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VCQ6_MONBE)

HSP 1 Score: 105 bits (263), Expect = 1.940e-23
Identity = 74/178 (41.57%), Postives = 85/178 (47.75%), Query Frame = 1 
Query:   61 DRLMIALHRLQTE-----GRVAYRRLLGMHGGGGGT------------SDADFKARLEAKVQADVEANSAS----------------DRPTNYYWPSPVPNAAHPQKFTASEP---FTYTFCWHAEPPFIVWHRALTAEFERLLQTYDPCTEFPEGSTRHSGPGALGIPYWAWEAWDG 486
            DR MIALH+LQT      GRVAYRRLLGMHGGG GT            ++ D   R   KV+AD++A  A                    T   WP P PN   P+K  A  P    T+ FCWH   PF  WHR L AEFE LLQ  DP  +       H+   ALG  Y  W+ WDG
Sbjct:  834 DRYMIALHKLQTSDDPNHGRVAYRRLLGMHGGGFGTKADQEQIEVWKNNNLDKAHRPLMKVKADLDAAQAEAAAPLFPEGKSTATLDQHDTMTSWPDPQPNVT-PRKIEADAPESYLTHEFCWHGWTPFFWWHRPLMAEFEWLLQENDPMDK------GHNNFDALGAHYLDWDNWDG 1004
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93382.21560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S1D9Z1_CYCTE1.620e-4954.17Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
K0THS6_THAOC3.390e-4249.69Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]
A0A7S4QPD7_9STRA5.900e-3044.85Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A9VCQ6_MONBE1.940e-2341.57Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93382contigM-pyrifera_M_contig93382:2..487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue1e-20
Seed eggNOG ortholog81824.XP_001750513.1
Preferred nameDYM
Hectar predicted targeting categoryother localisation
GOsGO:0001501,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006996,GO:0007030,GO:0007275,GO:0008150,GO:0009987,GO:0010256,GO:0012505,GO:0016043,GO:0019899,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0060348,GO:0071840
EggNOG free text desc.Golgi organization
EggNOG OGsKOG2225@1,KOG2225@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size471
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.749295-CDS-M-pyrifera_M_contig93382:1..4721622816845.749295-CDS-M-pyrifera_M_contig93382:1..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93382 2..472 -
1692278212.496899-CDS-M-pyrifera_M_contig93382:1..4721692278212.496899-CDS-M-pyrifera_M_contig93382:1..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93382 2..472 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.7604475-UTR-M-pyrifera_M_contig93382:472..4871622816845.7604475-UTR-M-pyrifera_M_contig93382:472..487Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93382 473..487 -
1692278212.5163708-UTR-M-pyrifera_M_contig93382:472..4871692278212.5163708-UTR-M-pyrifera_M_contig93382:472..487Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93382 473..487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93382.21560.1prot_M-pyrifera_M_contig93382.21560.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93382 2..472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93382.21560.1

>prot_M-pyrifera_M_contig93382.21560.1 ID=prot_M-pyrifera_M_contig93382.21560.1|Name=mRNA_M-pyrifera_M_contig93382.21560.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
MVMWNDRTDAGDAALDRLMIALHRLQTEGRVAYRRLLGMHGGGGGTSDAD
FKARLEAKVQADVEANSASDRPTNYYWPSPVPNAAHPQKFTASEPFTYTF
CWHAEPPFIVWHRALTAEFERLLQTYDPCTEFPEGSTRHSGPGALGIPYW
AWEAWDG
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mRNA from alignment at M-pyrifera_M_contig93382:2..487-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93382.21560.1 ID=mRNA_M-pyrifera_M_contig93382.21560.1|Name=mRNA_M-pyrifera_M_contig93382.21560.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig93382:2..487- (Macrocystis pyrifera P11B4 male)
CTCAGGCGTGACCTGATGGTGATGTGGAACGACCGCACCGACGCAGGCGA
TGCCGCCCTCGATAGGCTCATGATTGCACTTCATCGCCTCCAAACCGAGG
GCCGGGTGGCTTATCGCCGCCTCTTGGGAATGCATGGCGGCGGTGGTGGC
ACTTCGGACGCCGACTTCAAGGCACGCCTCGAGGCGAAGGTGCAGGCAGA
CGTGGAGGCGAATTCGGCCAGCGACAGGCCCACGAACTACTACTGGCCCT
CCCCTGTCCCCAACGCCGCCCATCCCCAGAAGTTCACGGCGAGTGAGCCC
TTCACCTACACGTTCTGCTGGCACGCCGAGCCCCCATTCATCGTCTGGCA
CCGCGCCCTCACCGCTGAGTTCGAGCGTCTGTTGCAGACCTACGATCCCT
GTACCGAGTTTCCAGAGGGCAGCACTCGCCACAGTGGCCCTGGAGCTCTG
GGTATTCCTTACTGGGCATGGGAGGCCTGGGACGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93382:2..487-

>mRNA_M-pyrifera_M_contig93382.21560.1 ID=mRNA_M-pyrifera_M_contig93382.21560.1|Name=mRNA_M-pyrifera_M_contig93382.21560.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig93382:2..487- (Macrocystis pyrifera P11B4 male)
ATGGTGATGTGGAACGACCGCACCGACGCAGGCGATGCCGCCCTCGATAG
GCTCATGATTGCACTTCATCGCCTCCAAACCGAGGGCCGGGTGGCTTATC
GCCGCCTCTTGGGAATGCATGGCGGCGGTGGTGGCACTTCGGACGCCGAC
TTCAAGGCACGCCTCGAGGCGAAGGTGCAGGCAGACGTGGAGGCGAATTC
GGCCAGCGACAGGCCCACGAACTACTACTGGCCCTCCCCTGTCCCCAACG
CCGCCCATCCCCAGAAGTTCACGGCGAGTGAGCCCTTCACCTACACGTTC
TGCTGGCACGCCGAGCCCCCATTCATCGTCTGGCACCGCGCCCTCACCGC
TGAGTTCGAGCGTCTGTTGCAGACCTACGATCCCTGTACCGAGTTTCCAG
AGGGCAGCACTCGCCACAGTGGCCCTGGAGCTCTGGGTATTCCTTACTGG
GCATGGGAGGCCTGGGACGGCATGGTGATGTGGAACGACCGCACCGACGC
AGGCGATGCCGCCCTCGATAGGCTCATGATTGCACTTCATCGCCTCCAAA
CCGAGGGCCGGGTGGCTTATCGCCGCCTCTTGGGAATGCATGGCGGCGGT
GGTGGCACTTCGGACGCCGACTTCAAGGCACGCCTCGAGGCGAAGGTGCA
GGCAGACGTGGAGGCGAATTCGGCCAGCGACAGGCCCACGAACTACTACT
GGCCCTCCCCTGTCCCCAACGCCGCCCATCCCCAGAAGTTCACGGCGAGT
GAGCCCTTCACCTACACGTTCTGCTGGCACGCCGAGCCCCCATTCATCGT
CTGGCACCGCGCCCTCACCGCTGAGTTCGAGCGTCTGTTGCAGACCTACG
ATCCCTGTACCGAGTTTCCAGAGGGCAGCACTCGCCACAGTGGCCCTGGA
GCTCTGGGTATTCCTTACTGGGCATGGGAGGCCTGGGACGGC
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