mRNA_M-pyrifera_M_contig93381.21559.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93381.21559.1
Unique NamemRNA_M-pyrifera_M_contig93381.21559.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93381.21559.1 vs. uniprot
Match: A0A7S4IC97_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IC97_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 8.020e-20
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   19 ERGESEPGVPRPNVIWRADNSTDHCAQCYRFFTLFHRRHHCRTCGWLFCDACSSRRAQLPPAF 207
            ER ES PGVPRP VIWR DNST  C  C+RFFT F R+HHCR CG +FCDACS  +  LP  F
Sbjct:  105 ERRESPPGVPRPRVIWRPDNSTSFCVGCHRFFTFFLRKHHCRGCGNIFCDACSGWQILLPQDF 167          
BLAST of mRNA_M-pyrifera_M_contig93381.21559.1 vs. uniprot
Match: A0A2G5B4I2_COERN (FYVE-type domain-containing protein (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B4I2_COERN)

HSP 1 Score: 65.5 bits (158), Expect = 9.810e-13
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   52 PNVIWRADNSTDHCAQCYRFFTLFHRRHHCRTCGWLFCDACSSRRAQL 195
            P   W  D +T  C QC R F+LF RRHHCR CG +FCD+CSS+R+ L
Sbjct:    6 PESAWEPDEATATCRQCKRRFSLFMRRHHCRRCGLVFCDSCSSKRSLL 53          
BLAST of mRNA_M-pyrifera_M_contig93381.21559.1 vs. uniprot
Match: A8PSB6_MALGO (Uncharacterized protein n=1 Tax=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) TaxID=425265 RepID=A8PSB6_MALGO)

HSP 1 Score: 68.9 bits (167), Expect = 2.160e-12
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   43 VPRP-NVIWRADNSTDHCAQCYRFFTLFHRRHHCRTCGWLFCDACSSRRAQLP 198
            +P P +  W  D   D C +C R FTLF R+HHCR CG +FCDAC+S+RAQLP
Sbjct:    6 MPPPLSARWEDDMDVDACRKCQRKFTLFFRKHHCRRCGRIFCDACTSQRAQLP 58          
BLAST of mRNA_M-pyrifera_M_contig93381.21559.1 vs. uniprot
Match: A0A0M8MVG5_9BASI (Fyve-domain-containing protein n=1 Tax=Malassezia pachydermatis TaxID=77020 RepID=A0A0M8MVG5_9BASI)

HSP 1 Score: 66.6 bits (161), Expect = 2.670e-11
Identity = 29/51 (56.86%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   43 VPRPNVIWRADNSTDHCAQCYRFFTLFHRRHHCRTCGWLFCDACSSRRAQL 195
            V  PN  W  D     C QC R FTLF+RRHHCR CG ++CDAC+S R QL
Sbjct:   61 VSNPNK-WEPDEDAKECRQCGRSFTLFYRRHHCRLCGKIYCDACTSNRVQL 110          
BLAST of mRNA_M-pyrifera_M_contig93381.21559.1 vs. uniprot
Match: G4TK59_SERID (FYVE-type domain-containing protein n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TK59_SERID)

HSP 1 Score: 65.5 bits (158), Expect = 5.460e-11
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   43 VPRPNVI---WRADNSTDHCAQCYRFFTLFHRRHHCRTCGWLFCDACSSRRAQLPPA 204
             P P  I   W  D++   C  C R FT F R+HHCR CG +FCD+CSSR+A L PA
Sbjct:   74 APTPQSIQIRWERDDAVQECNNCRRRFTFFLRKHHCRRCGKIFCDSCSSRKALLDPA 130          
BLAST of mRNA_M-pyrifera_M_contig93381.21559.1 vs. uniprot
Match: A0A7S2DAF7_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DAF7_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 7.430e-11
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   52 PN-VIWRADNSTDHCAQCYRFFTLFHRRHHCRTCGWLFCDACSSRRAQLP 198
            PN   W+AD STD C  C   F+L+ RRHHCR CG +FCDAC+ + A +P
Sbjct:   31 PNGATWQADWSTDECGHCETTFSLWRRRHHCRGCGHIFCDACAPQNAMMP 80          
BLAST of mRNA_M-pyrifera_M_contig93381.21559.1 vs. uniprot
Match: A0A163M871_ABSGL (FYVE-type domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163M871_ABSGL)

HSP 1 Score: 65.1 bits (157), Expect = 1.290e-10
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   31 SEPGVPRPNVIWRADNSTDHCAQCYRFFTLFHRRHHCRTCGWLFCDACSSRRAQLP 198
            SEP  PRP  +W +D     C +C R F+   RRHHCR CG + CD CSS R +LP
Sbjct:  385 SEP--PRPRHVWESDRQASECRRCNRRFSFLVRRHHCRRCGQIVCDRCSSHRVRLP 438          
BLAST of mRNA_M-pyrifera_M_contig93381.21559.1 vs. uniprot
Match: A0A1X2IFK5_9FUNG (Uncharacterized protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IFK5_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 1.300e-10
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   31 SEPGVPRPNVIWRADNSTDHCAQCYRFFTLFHRRHHCRTCGWLFCDACSSRRAQLP 198
            SEP  PRP  +W +D     C +C R F+   RRHHCR CG + CD CSS R +LP
Sbjct:  469 SEP--PRPRHVWESDRQASECRRCSRRFSFLVRRHHCRRCGQIVCDRCSSHRVRLP 522          
BLAST of mRNA_M-pyrifera_M_contig93381.21559.1 vs. uniprot
Match: A0A4U7KP49_9BASI (Uncharacterized protein n=1 Tax=Sporisorium graminicola TaxID=280036 RepID=A0A4U7KP49_9BASI)

HSP 1 Score: 64.3 bits (155), Expect = 2.470e-10
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   64 WRADNSTDHCAQCYRFFTLFHRRHHCRTCGWLFCDACSSRRAQLPPA 204
            W+ D     C  C R FT F R+HHCR CG +FCDACSSRRAQL  A
Sbjct: 1034 WQRDEEARDCLGCGRHFTFFLRKHHCRRCGRIFCDACSSRRAQLSMA 1080          
BLAST of mRNA_M-pyrifera_M_contig93381.21559.1 vs. uniprot
Match: UPI0015A8D032 (lateral signaling target protein 2 homolog isoform X1 n=2 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015A8D032)

HSP 1 Score: 63.9 bits (154), Expect = 3.320e-10
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   40 GVPRP-NV----IWRADNSTDHCAQCYRFFTLFHRRHHCRTCGWLFCDACSSRRAQLP 198
            GVPR  NV    +W  D++ DHC  C+  FTL  RRHHCR+CG +FC  CS   A LP
Sbjct:  595 GVPRVGNVTGPPVWVPDSACDHCMACHAPFTLLRRRHHCRSCGKIFCSRCSPNEAPLP 652          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93381.21559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IC97_9EUKA8.020e-2065.08Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A2G5B4I2_COERN9.810e-1356.25FYVE-type domain-containing protein (Fragment) n=1... [more]
A8PSB6_MALGO2.160e-1256.60Uncharacterized protein n=1 Tax=Malassezia globosa... [more]
A0A0M8MVG5_9BASI2.670e-1156.86Fyve-domain-containing protein n=1 Tax=Malassezia ... [more]
G4TK59_SERID5.460e-1150.88FYVE-type domain-containing protein n=1 Tax=Serend... [more]
A0A7S2DAF7_9EUKA7.430e-1154.00Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A163M871_ABSGL1.290e-1050.00FYVE-type domain-containing protein n=1 Tax=Absidi... [more]
A0A1X2IFK5_9FUNG1.300e-1050.00Uncharacterized protein n=1 Tax=Absidia repens Tax... [more]
A0A4U7KP49_9BASI2.470e-1059.57Uncharacterized protein n=1 Tax=Sporisorium gramin... [more]
UPI0015A8D0323.320e-1051.72lateral signaling target protein 2 homolog isoform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93381contigM-pyrifera_M_contig93381:326..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.9
Seed ortholog evalue9.1e-09
Seed eggNOG ortholog65672.G4TK59
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein present in Fab1, YOTB, Vac1, and EEA1
EggNOG OGs228KP@155619,39WPS@33154,3H1VD@355688,3NYWB@4751,3V194@5204,KOG1729@1,KOG1729@2759
COG Functional cat.O
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.7127612-CDS-M-pyrifera_M_contig93381:325..5411622816845.7127612-CDS-M-pyrifera_M_contig93381:325..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93381 326..541 -
1692278212.4840713-CDS-M-pyrifera_M_contig93381:325..5411692278212.4840713-CDS-M-pyrifera_M_contig93381:325..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93381 326..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93381.21559.1prot_M-pyrifera_M_contig93381.21559.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93381 326..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93381.21559.1

>prot_M-pyrifera_M_contig93381.21559.1 ID=prot_M-pyrifera_M_contig93381.21559.1|Name=mRNA_M-pyrifera_M_contig93381.21559.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
PKAEGAERGESEPGVPRPNVIWRADNSTDHCAQCYRFFTLFHRRHHCRTC
GWLFCDACSSRRAQLPPAFLQN
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mRNA from alignment at M-pyrifera_M_contig93381:326..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93381.21559.1 ID=mRNA_M-pyrifera_M_contig93381.21559.1|Name=mRNA_M-pyrifera_M_contig93381.21559.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig93381:326..541- (Macrocystis pyrifera P11B4 male)
CCCAAGGCGGAGGGCGCGGAGAGAGGAGAGAGTGAGCCTGGAGTGCCGCG ACCCAACGTTATTTGGAGAGCAGACAACAGCACCGACCACTGCGCGCAGT GCTACCGCTTCTTCACGCTCTTCCACCGCCGCCACCACTGCAGGACGTGC GGCTGGCTCTTCTGCGACGCCTGCTCCAGCAGGAGGGCCCAACTCCCTCC AGCCTTCCTGCAGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93381:326..541-

>mRNA_M-pyrifera_M_contig93381.21559.1 ID=mRNA_M-pyrifera_M_contig93381.21559.1|Name=mRNA_M-pyrifera_M_contig93381.21559.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig93381:326..541- (Macrocystis pyrifera P11B4 male)
CCCAAGGCGGAGGGCGCGGAGAGAGGAGAGAGTGAGCCTGGAGTGCCGCG
ACCCAACGTTATTTGGAGAGCAGACAACAGCACCGACCACTGCGCGCAGT
GCTACCGCTTCTTCACGCTCTTCCACCGCCGCCACCACTGCAGGACGTGC
GGCTGGCTCTTCTGCGACGCCTGCTCCAGCAGGAGGGCCCAACTCCCTCC
AGCCTTCCTGCAGAACCCCAAGGCGGAGGGCGCGGAGAGAGGAGAGAGTG
AGCCTGGAGTGCCGCGACCCAACGTTATTTGGAGAGCAGACAACAGCACC
GACCACTGCGCGCAGTGCTACCGCTTCTTCACGCTCTTCCACCGCCGCCA
CCACTGCAGGACGTGCGGCTGGCTCTTCTGCGACGCCTGCTCCAGCAGGA
GGGCCCAACTCCCTCCAGCCTTCCTGCAGAAC
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