mRNA_M-pyrifera_M_contig93378.21558.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93378.21558.1
Unique NamemRNA_M-pyrifera_M_contig93378.21558.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93378.21558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93378contigM-pyrifera_M_contig93378:352..711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.6776373-CDS-M-pyrifera_M_contig93378:351..7111622816845.6776373-CDS-M-pyrifera_M_contig93378:351..711Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93378 352..711 +
1692278212.4744194-CDS-M-pyrifera_M_contig93378:351..7111692278212.4744194-CDS-M-pyrifera_M_contig93378:351..711Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93378 352..711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93378.21558.1prot_M-pyrifera_M_contig93378.21558.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93378 352..711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93378.21558.1

>prot_M-pyrifera_M_contig93378.21558.1 ID=prot_M-pyrifera_M_contig93378.21558.1|Name=mRNA_M-pyrifera_M_contig93378.21558.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
NGIVRVCWDGAADADFSEPDPVPGLGGIDLTISGSFSMLVNITTDHDVEY
TFRIYSGASGESERLLQVPDVGDDSLPQIFLLTFDSFTGDGSFNSVDAIE
MVINFNISGAIDTAVNLITI
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mRNA from alignment at M-pyrifera_M_contig93378:352..711+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93378.21558.1 ID=mRNA_M-pyrifera_M_contig93378.21558.1|Name=mRNA_M-pyrifera_M_contig93378.21558.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig93378:352..711+ (Macrocystis pyrifera P11B4 male)
AACGGTATCGTTCGCGTGTGCTGGGATGGAGCCGCCGACGCGGACTTCTC
CGAGCCCGACCCCGTTCCCGGTCTTGGCGGCATTGACCTCACCATCTCTG
GCTCTTTCTCCATGCTGGTGAACATCACCACCGATCACGACGTCGAGTAC
ACCTTCCGCATCTACTCTGGCGCCTCCGGTGAATCTGAGCGCCTCCTCCA
GGTCCCTGACGTTGGTGACGATTCGCTCCCCCAGATTTTCCTCCTCACCT
TCGACTCTTTCACCGGCGACGGCAGCTTCAACAGCGTCGACGCCATTGAG
ATGGTTATCAACTTCAACATTTCTGGCGCCATTGACACCGCCGTGAACCT
CATCACCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93378:352..711+

>mRNA_M-pyrifera_M_contig93378.21558.1 ID=mRNA_M-pyrifera_M_contig93378.21558.1|Name=mRNA_M-pyrifera_M_contig93378.21558.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig93378:352..711+ (Macrocystis pyrifera P11B4 male)
AACGGTATCGTTCGCGTGTGCTGGGATGGAGCCGCCGACGCGGACTTCTC
CGAGCCCGACCCCGTTCCCGGTCTTGGCGGCATTGACCTCACCATCTCTG
GCTCTTTCTCCATGCTGGTGAACATCACCACCGATCACGACGTCGAGTAC
ACCTTCCGCATCTACTCTGGCGCCTCCGGTGAATCTGAGCGCCTCCTCCA
GGTCCCTGACGTTGGTGACGATTCGCTCCCCCAGATTTTCCTCCTCACCT
TCGACTCTTTCACCGGCGACGGCAGCTTCAACAGCGTCGACGCCATTGAG
ATGGTTATCAACTTCAACATTTCTGGCGCCATTGACACCGCCGTGAACCT
CATCACCATCAACGGTATCGTTCGCGTGTGCTGGGATGGAGCCGCCGACG
CGGACTTCTCCGAGCCCGACCCCGTTCCCGGTCTTGGCGGCATTGACCTC
ACCATCTCTGGCTCTTTCTCCATGCTGGTGAACATCACCACCGATCACGA
CGTCGAGTACACCTTCCGCATCTACTCTGGCGCCTCCGGTGAATCTGAGC
GCCTCCTCCAGGTCCCTGACGTTGGTGACGATTCGCTCCCCCAGATTTTC
CTCCTCACCTTCGACTCTTTCACCGGCGACGGCAGCTTCAACAGCGTCGA
CGCCATTGAGATGGTTATCAACTTCAACATTTCTGGCGCCATTGACACCG
CCGTGAACCTCATCACCATC
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