mRNA_M-pyrifera_M_contig93376.21556.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93376.21556.1
Unique NamemRNA_M-pyrifera_M_contig93376.21556.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93376.21556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93376contigM-pyrifera_M_contig93376:238..678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.8
Seed ortholog evalue6e-07
Seed eggNOG ortholog45351.EDO35439
Hectar predicted targeting categorymitochondrion
EggNOG OGs2E1V9@1,2S954@2759,3A83B@33154,3BSJM@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.5889652-CDS-M-pyrifera_M_contig93376:237..6781622816845.5889652-CDS-M-pyrifera_M_contig93376:237..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93376 238..678 -
1692278212.4274924-CDS-M-pyrifera_M_contig93376:237..6781692278212.4274924-CDS-M-pyrifera_M_contig93376:237..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93376 238..678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93376.21556.1prot_M-pyrifera_M_contig93376.21556.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93376 238..678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93376.21556.1

>prot_M-pyrifera_M_contig93376.21556.1 ID=prot_M-pyrifera_M_contig93376.21556.1|Name=mRNA_M-pyrifera_M_contig93376.21556.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
GVSLPVLRSGSTSSRALVLGAGVLTAGGDYTFTAVARLSTDHNVNGSVSV
RVGVRVEPLVCLVAGGSARTVGSSSPLVLDGSPSYDPSAVTSVQGQFAWE
CTASGGGVCMNATSGEALSLAAGARLSLPAFALAQGTYTLKMTYSKG
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mRNA from alignment at M-pyrifera_M_contig93376:238..678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93376.21556.1 ID=mRNA_M-pyrifera_M_contig93376.21556.1|Name=mRNA_M-pyrifera_M_contig93376.21556.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig93376:238..678- (Macrocystis pyrifera P11B4 male)
GGCGTGTCGCTGCCGGTGCTGCGGTCTGGGTCGACGTCGTCGCGCGCGCT
GGTGCTGGGAGCGGGTGTGCTGACTGCGGGTGGCGACTACACGTTCACGG
CGGTGGCGAGGTTGTCGACGGACCACAACGTGAACGGCAGCGTGAGCGTG
CGGGTGGGCGTGCGGGTGGAGCCGCTGGTGTGTTTGGTGGCGGGCGGTTC
GGCGCGCACGGTGGGCTCGTCTTCTCCGCTGGTGTTGGACGGCAGCCCGT
CGTACGACCCGAGCGCGGTGACGTCGGTGCAGGGCCAGTTCGCGTGGGAG
TGCACTGCGTCGGGCGGGGGCGTGTGCATGAACGCGACGAGCGGGGAGGC
GCTGTCGCTGGCGGCTGGTGCGCGTCTGTCGCTGCCGGCGTTCGCGCTGG
CGCAGGGCACGTACACGCTGAAGATGACGTACAGCAAGGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93376:238..678-

>mRNA_M-pyrifera_M_contig93376.21556.1 ID=mRNA_M-pyrifera_M_contig93376.21556.1|Name=mRNA_M-pyrifera_M_contig93376.21556.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig93376:238..678- (Macrocystis pyrifera P11B4 male)
GGCGTGTCGCTGCCGGTGCTGCGGTCTGGGTCGACGTCGTCGCGCGCGCT
GGTGCTGGGAGCGGGTGTGCTGACTGCGGGTGGCGACTACACGTTCACGG
CGGTGGCGAGGTTGTCGACGGACCACAACGTGAACGGCAGCGTGAGCGTG
CGGGTGGGCGTGCGGGTGGAGCCGCTGGTGTGTTTGGTGGCGGGCGGTTC
GGCGCGCACGGTGGGCTCGTCTTCTCCGCTGGTGTTGGACGGCAGCCCGT
CGTACGACCCGAGCGCGGTGACGTCGGTGCAGGGCCAGTTCGCGTGGGAG
TGCACTGCGTCGGGCGGGGGCGTGTGCATGAACGCGACGAGCGGGGAGGC
GCTGTCGCTGGCGGCTGGTGCGCGTCTGTCGCTGCCGGCGTTCGCGCTGG
CGCAGGGCACGTACACGCTGAAGATGACGTACAGCAAGGGTGGCGTGTCG
CTGCCGGTGCTGCGGTCTGGGTCGACGTCGTCGCGCGCGCTGGTGCTGGG
AGCGGGTGTGCTGACTGCGGGTGGCGACTACACGTTCACGGCGGTGGCGA
GGTTGTCGACGGACCACAACGTGAACGGCAGCGTGAGCGTGCGGGTGGGC
GTGCGGGTGGAGCCGCTGGTGTGTTTGGTGGCGGGCGGTTCGGCGCGCAC
GGTGGGCTCGTCTTCTCCGCTGGTGTTGGACGGCAGCCCGTCGTACGACC
CGAGCGCGGTGACGTCGGTGCAGGGCCAGTTCGCGTGGGAGTGCACTGCG
TCGGGCGGGGGCGTGTGCATGAACGCGACGAGCGGGGAGGCGCTGTCGCT
GGCGGCTGGTGCGCGTCTGTCGCTGCCGGCGTTCGCGCTGGCGCAGGGCA
CGTACACGCTGAAGATGACGTACAGCAAGGGT
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