mRNA_M-pyrifera_M_contig93375.21555.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93375.21555.1
Unique NamemRNA_M-pyrifera_M_contig93375.21555.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93375.21555.1 vs. uniprot
Match: A7RL27_NEMVE (Protein YIPF3 (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RL27_NEMVE)

HSP 1 Score: 114 bits (285), Expect = 2.240e-29
Identity = 64/140 (45.71%), Postives = 85/140 (60.71%), Query Frame = 1
Query:   10 QVYGAGAERAKGIFDFYANIDLIRPYFDVEPRDVALRLLQSLLPTLDLDALAAAGEGAGRPRAQADLYGPLMLCFTLSSVLLYGLKLQRESAVSNLQQGTLLSTALAACFTYWALASAFYYFLCFMVNTNMTLFQVASST 429
            QV+ AG + AK  FD YANID++RPYFDVEP +V  RL  SL+P L   A      G        +LYGP+ML FTL +VLL+G+K    ++   +Q+GTL+ TA   CF YW   SAF Y + +  NT++T  Q+ S T
Sbjct:    1 QVWQAGKQSAKRAFDLYANIDILRPYFDVEPTEVRSRLFHSLIPQLPSTASPQTVVG--------ELYGPMMLVFTLIAVLLFGMK----TSGHTVQEGTLMGTAFGLCFGYWLGGSAFCYCVAYFCNTHLTFLQICSLT 128          
BLAST of mRNA_M-pyrifera_M_contig93375.21555.1 vs. uniprot
Match: A0A7M5X0W9_9CNID (Protein YIPF n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X0W9_9CNID)

HSP 1 Score: 116 bits (290), Expect = 2.650e-29
Identity = 62/143 (43.36%), Postives = 89/143 (62.24%), Query Frame = 1
Query:    1 VARQVYGAGAERAKGIFDFYANIDLIRPYFDVEPRDVALRLLQSLLPTLDLDALAAAGEGAGRPRAQADLYGPLMLCFTLSSVLLYGLKLQRESAVSNLQQGTLLSTALAACFTYWALASAFYYFLCFMVNTNMTLFQVASST 429
            V  QV+ AG   A+  FD Y+NID +RPYFDVEPRDV +RL +SL+P   +      GE          LYGP+M+ FTL ++LL+ +K     +   +Q+GTL+ TA+  CF YW   S+FYYF+ ++ N+++TL Q+ S T
Sbjct:   12 VKGQVWAAGTSHARRFFDLYSNIDNLRPYFDVEPRDVLVRLGKSLVPIKPVKPQTVEGE----------LYGPIMVVFTLIALLLFSMK----HSGHTVQEGTLMGTAIGVCFGYWLGGSSFYYFIAYICNSHITLLQIVSLT 140          
BLAST of mRNA_M-pyrifera_M_contig93375.21555.1 vs. uniprot
Match: A0A8B7DF87_HYDVU (Protein YIPF n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DF87_HYDVU)

HSP 1 Score: 113 bits (282), Expect = 2.760e-29
Identity = 60/143 (41.96%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 VARQVYGAGAERAKGIFDFYANIDLIRPYFDVEPRDVALRLLQSLLPTLDLDALAAAGEGAGRPRAQADLYGPLMLCFTLSSVLLYGLKLQRESAVSNLQQGTLLSTALAACFTYWALASAFYYFLCFMVNTNMTLFQVASST 429
            + + V+ AG  +A   FD Y+NID +RPYFDVEP++V +RL QSL+P         AGE          LYGP+M+ FTL ++LL+ +K    +     Q+GTL+ TA+  CF YW   S F+YFL ++ N ++TL Q+ S T
Sbjct:    4 IQQLVWAAGKSQALRFFDLYSNIDTLRPYFDVEPKEVLVRLSQSLVPRKTTKPQTVAGE----------LYGPMMVVFTLVALLLFSMKFSGHTV----QEGTLMGTAIGVCFGYWLGGSIFFYFLSYLCNAHITLLQIVSLT 132          
BLAST of mRNA_M-pyrifera_M_contig93375.21555.1 vs. uniprot
Match: UPI00077ADD9B (protein YIPF3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077ADD9B)

HSP 1 Score: 115 bits (288), Expect = 8.010e-29
Identity = 65/141 (46.10%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    1 VARQVYGAGAERAKGIFDFYANIDLIRPYFDVEPRDVALRLLQSLLPTLDLDALAAAGEGAGRPRAQADLYGPLMLCFTLSSVLLYGLKLQRESAVSNLQQGTLLSTALAACFTYWALASAFYYFLCFMVNTNMTLFQVAS 423
            V   V+ AG + AK  FD YANID++RPYFDVEP +V  RLL SL+P     A      G        +LYGPLML FTL ++LL+ +K    S+   +Q+GTL+ TA+  CF YW   SAF+Y + FM NT++T  Q+ S
Sbjct:   79 VGGYVWQAGKQSAKRAFDLYANIDILRPYFDVEPTEVRNRLLNSLIPRFPSTASPQTVVG--------ELYGPLMLVFTLIAILLFSMK----SSGHTVQEGTLMGTAVGVCFGYWIGGSAFFYSVSFMCNTHLTFLQILS 207          
BLAST of mRNA_M-pyrifera_M_contig93375.21555.1 vs. uniprot
Match: A0A8B6XRP8_HYDVU (Protein YIPF n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XRP8_HYDVU)

HSP 1 Score: 115 bits (288), Expect = 2.080e-28
Identity = 62/143 (43.36%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 VARQVYGAGAERAKGIFDFYANIDLIRPYFDVEPRDVALRLLQSLLPTLDLDALAAAGEGAGRPRAQADLYGPLMLCFTLSSVLLYGLKLQRESAVSNLQQGTLLSTALAACFTYWALASAFYYFLCFMVNTNMTLFQVASST 429
            V  QV+ AG  +A   FD Y+NID +RPYFDVEP++V +RL QSL+P         AGE          LYGP+M+ FTL ++LL+ +K    +     Q+GTL+ TA+  CF YW   S F+YFL ++ N ++TL Q+ S T
Sbjct:   87 VGGQVWAAGKSQALRFFDLYSNIDTLRPYFDVEPKEVLVRLSQSLVPRKTTKPQTVAGE----------LYGPMMVVFTLVALLLFSMKFSGHTV----QEGTLMGTAIGVCFGYWLGGSIFFYFLSYLCNAHITLLQIVSLT 215          
BLAST of mRNA_M-pyrifera_M_contig93375.21555.1 vs. uniprot
Match: UPI0010FC8ADF (protein YIPF3-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI0010FC8ADF)

HSP 1 Score: 114 bits (286), Expect = 6.620e-28
Identity = 65/141 (46.10%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    1 VARQVYGAGAERAKGIFDFYANIDLIRPYFDVEPRDVALRLLQSLLPTLDLDALAAAGEGAGRPRAQADLYGPLMLCFTLSSVLLYGLKLQRESAVSNLQQGTLLSTALAACFTYWALASAFYYFLCFMVNTNMTLFQVAS 423
            V   V+ AG + AK  FD YANID++RPYFDVEP +V  RLL SL+P     A      G        +LYGPLML FTL ++LL+ +K    S+   +Q+GTL+ TA+  CF YW   SAF+Y + FM NT++T  Q+ S
Sbjct:   79 VGGYVWQAGKQSAKRAFDLYANIDILRPYFDVEPVEVRNRLLNSLIPRFPSTASPQTVVG--------ELYGPLMLVFTLIAILLFSMK----SSGHTVQEGTLMGTAVGVCFGYWIGGSAFFYSVSFMCNTHLTFLQILS 207          
BLAST of mRNA_M-pyrifera_M_contig93375.21555.1 vs. uniprot
Match: A0A6P8IYV5_ACTTE (Protein YIPF3 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IYV5_ACTTE)

HSP 1 Score: 114 bits (286), Expect = 7.530e-28
Identity = 67/143 (46.85%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 VARQVYGAGAERAKGIFDFYANIDLIRPYFDVEPRDVALRLLQSLLPTLDLDALAAAGEGAGRPRAQADLYGPLMLCFTLSSVLLYGLKLQRESAVSNLQQGTLLSTALAACFTYWALASAFYYFLCFMVNTNMTLFQVASST 429
            V+  V+ AG + AK  FD YANID++RPYFDVEP DV  RLL SL+P            G        +LYGPLML FTL +VLL+G+K    S+   +Q+GTL+ TA   CF YW   SAF Y + +  NT++T  Q+ SST
Sbjct:   82 VSGYVWQAGTKSAKRAFDLYANIDILRPYFDVEPADVRNRLLYSLIPKFPSVTSPQTVVG--------ELYGPLMLVFTLITVLLFGMK----SSGHTVQEGTLMGTACGLCFGYWFGGSAFCYCVAYFCNTHLTFLQILSST 212          
BLAST of mRNA_M-pyrifera_M_contig93375.21555.1 vs. uniprot
Match: UPI0013904013 (protein YIPF3 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013904013)

HSP 1 Score: 113 bits (282), Expect = 2.880e-27
Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 VARQVYGAGAERAKGIFDFYANIDLIRPYFDVEPRDVALRLLQSLLPTLDLDALAAAGEGAGRPRAQADLYGPLMLCFTLSSVLLYGLKLQRESAVSNLQQGTLLSTALAACFTYWALASAFYYFLCFMVNTNMTLFQVASST 429
            V+  V+ AG + AK  FD YANID++RPYFDVEP +V  RL  SL+P L   A      G        +LYGP+ML FTL +VLL+G+K    ++   +Q+GTL+ TA   CF YW   SAF Y + +  NT++T  Q+ S T
Sbjct:   81 VSGYVWQAGKQSAKRAFDLYANIDILRPYFDVEPTEVRSRLFHSLIPQLPSTASPQTVVG--------ELYGPMMLVFTLIAVLLFGMK----TSGHTVQEGTLMGTAFGLCFGYWLGGSAFCYCVAYFCNTHLTFLQICSLT 211          
BLAST of mRNA_M-pyrifera_M_contig93375.21555.1 vs. uniprot
Match: I3JJE1_ORENI (Protein YIPF3 n=19 Tax=Ovalentaria TaxID=1489908 RepID=I3JJE1_ORENI)

HSP 1 Score: 110 bits (276), Expect = 1.900e-26
Identity = 63/142 (44.37%), Postives = 91/142 (64.08%), Query Frame = 1
Query:    1 VARQVYGAGAERAKGIFDFYANIDLIRPYFDVEPRDVALRLLQSLLPTLDLD-ALAAAGEGAGRPRAQADLYGPLMLCFTLSSVLLYGLKLQRESAVSNLQQGTLLSTALAACFTYWALASAFYYFLCFMVNTNMTLFQVAS 423
            VA +V+ AG  +A   F+ YANID++RPYFDVEP  V  RL++SL+P   ++     AGE          LYGPLML FTL ++LL+G+K    ++ + +++GTL+ TA+  CF YW   SAF YFL ++VN  +T+ Q+ S
Sbjct:  102 VADEVWQAGKRQASKAFNLYANIDILRPYFDVEPVQVRNRLIESLIPVRMINFPQKIAGE----------LYGPLMLVFTLVAILLHGMK----TSGTVIREGTLMGTAIGTCFGYWLGVSAFIYFLAYLVNAQITMLQMLS 229          
BLAST of mRNA_M-pyrifera_M_contig93375.21555.1 vs. uniprot
Match: A0A8C6MDY9_NOTFU (Protein YIPF3 n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6MDY9_NOTFU)

HSP 1 Score: 110 bits (274), Expect = 2.570e-26
Identity = 61/142 (42.96%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    1 VARQVYGAGAERAKGIFDFYANIDLIRPYFDVEPRDVALRLLQSLLPTLDLD-ALAAAGEGAGRPRAQADLYGPLMLCFTLSSVLLYGLKLQRESAVSNLQQGTLLSTALAACFTYWALASAFYYFLCFMVNTNMTLFQVAS 423
            VA +V+ AG  +A   F+ YANID++RPYFDVEP  V  RL++S++P   +      AGE          LYGPLML FTL ++LL+G+K    ++ + +++GTL+ TA+  CF YW   S+F YFL ++VN  +T+ Q+ S
Sbjct:   87 VADEVWQAGKRQASKAFNLYANIDILRPYFDVEPSQVRSRLMESMIPVRMISFPQKVAGE----------LYGPLMLVFTLVAILLHGMK----TSGTVIREGTLMGTAIGTCFGYWLGVSSFIYFLAYLVNAQITMLQMLS 214          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93375.21555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A7RL27_NEMVE2.240e-2945.71Protein YIPF3 (Fragment) n=1 Tax=Nematostella vect... [more]
A0A7M5X0W9_9CNID2.650e-2943.36Protein YIPF n=1 Tax=Clytia hemisphaerica TaxID=25... [more]
A0A8B7DF87_HYDVU2.760e-2941.96Protein YIPF n=1 Tax=Hydra vulgaris TaxID=6087 Rep... [more]
UPI00077ADD9B8.010e-2946.10protein YIPF3-like n=1 Tax=Acropora digitifera Tax... [more]
A0A8B6XRP8_HYDVU2.080e-2843.36Protein YIPF n=2 Tax=Hydra vulgaris TaxID=6087 Rep... [more]
UPI0010FC8ADF6.620e-2846.10protein YIPF3-like n=1 Tax=Acropora millepora TaxI... [more]
A0A6P8IYV5_ACTTE7.530e-2846.85Protein YIPF3 n=1 Tax=Actinia tenebrosa TaxID=6105... [more]
UPI00139040132.880e-2744.76protein YIPF3 n=1 Tax=Nematostella vectensis TaxID... [more]
I3JJE1_ORENI1.900e-2644.37Protein YIPF3 n=19 Tax=Ovalentaria TaxID=1489908 R... [more]
A0A8C6MDY9_NOTFU2.570e-2642.96Protein YIPF3 n=1 Tax=Nothobranchius furzeri TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93375contigM-pyrifera_M_contig93375:192..692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score114.0
Seed ortholog evalue5.8e-23
Seed eggNOG ortholog45351.EDO47784
Preferred nameYIPF3
KEGG koko:K15149
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0012505,GO:0030133,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0097708
EggNOG free text desc.Yip1 domain family member 3
EggNOG OGs38FCD@33154,3BF6Q@33208,KOG3114@1,KOG3114@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons2
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.5405579-CDS-M-pyrifera_M_contig93375:191..4851622816845.5405579-CDS-M-pyrifera_M_contig93375:191..485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93375 192..485 -
1692278212.4050229-CDS-M-pyrifera_M_contig93375:191..4851692278212.4050229-CDS-M-pyrifera_M_contig93375:191..485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93375 192..485 -
1622816845.5539842-CDS-M-pyrifera_M_contig93375:557..6921622816845.5539842-CDS-M-pyrifera_M_contig93375:557..692Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93375 558..692 -
1692278212.4173982-CDS-M-pyrifera_M_contig93375:557..6921692278212.4173982-CDS-M-pyrifera_M_contig93375:557..692Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93375 558..692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93375.21555.1prot_M-pyrifera_M_contig93375.21555.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93375 192..692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93375.21555.1

>prot_M-pyrifera_M_contig93375.21555.1 ID=prot_M-pyrifera_M_contig93375.21555.1|Name=mRNA_M-pyrifera_M_contig93375.21555.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
VARQVYGAGAERAKGIFDFYANIDLIRPYFDVEPRDVALRLLQSLLPTLD
LDALAAAGEGAGRPRAQADLYGPLMLCFTLSSVLLYGLKLQRESAVSNLQ
QGTLLSTALAACFTYWALASAFYYFLCFMVNTNMTLFQVASST
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mRNA from alignment at M-pyrifera_M_contig93375:192..692-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93375.21555.1 ID=mRNA_M-pyrifera_M_contig93375.21555.1|Name=mRNA_M-pyrifera_M_contig93375.21555.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig93375:192..692- (Macrocystis pyrifera P11B4 male)
GTGGCGCGACAGGTGTACGGCGCCGGGGCGGAGCGCGCGAAGGGGATCTT CGACTTCTACGCGAACATCGACCTGATTCGGCCCTACTTCGACGTGGAGC CGCGCGACGTCGCCCTGCGCCTCCTGCAGTCGCTGGTGCCCTACCCCCCG GCCTTCCGCTCCTGTGCGCCGCCCGAGGCGCCACAGGCGGAGGAGCCGCA CCTGGAGCTGCCCACGCTCGACCTCGACGCCCTCGCCGCCGCCGGCGAGG GGGCGGGGCGGCCGCGGGCGCAGGCGGACCTCTACGGCCCGCTGATGCTG TGCTTCACCCTCAGCTCGGTGCTGCTGTACGGCCTCAAGCTGCAGCGCGA GAGCGCGGTCAGCAACCTGCAGCAGGGCACCCTCCTCAGCACCGCCCTCG CCGCCTGCTTCACCTACTGGGCCCTCGCCTCCGCCTTCTACTACTTCCTC TGCTTCATGGTCAACACCAACATGACCCTCTTCCAGGTCGCCTCCTCCAC C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93375:192..692-

>mRNA_M-pyrifera_M_contig93375.21555.1 ID=mRNA_M-pyrifera_M_contig93375.21555.1|Name=mRNA_M-pyrifera_M_contig93375.21555.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig93375:192..692- (Macrocystis pyrifera P11B4 male)
GTGGCGCGACAGGTGTACGGCGCCGGGGCGGAGCGCGCGAAGGGGATCTT
CGACTTCTACGCGAACATCGACCTGATTCGGCCCTACTTCGACGTGGAGC
CGCGCGACGTCGCCCTGCGCCTCCTGCAGTCGCTGGTGGCGCGACAGGTG
TACGGCGCCGGGGCGGAGCGCGCGAAGGGGATCTTCGACTTCTACGCGAA
CATCGACCTGATTCGGCCCTACTTCGACGTGGAGCCGCGCGACGTCGCCC
TGCGCCTCCTGCAGTCGCTGCTGCCCACGCTCGACCTCGACGCCCTCGCC
GCCGCCGGCGAGGGGGCGGGGCGGCCGCGGGCGCAGGCGGACCTCTACGG
CCCGCTGATGCTGTGCTTCACCCTCAGCTCGGTGCTGCTGTACGGCCTCA
AGCTGCAGCGCGAGAGCGCGGTCAGCAACCTGCAGCAGGGCACCCTCCTC
AGCACCGCCCTCGCCGCCTGCTTCACCTACTGGGCCCTCGCCTCCGCCTT
CTACTACTTCCTCTGCTTCATGGTCAACACCAACATGACCCTCTTCCAGG
TCGCCTCCTCCACCCTGCCCACGCTCGACCTCGACGCCCTCGCCGCCGCC
GGCGAGGGGGCGGGGCGGCCGCGGGCGCAGGCGGACCTCTACGGCCCGCT
GATGCTGTGCTTCACCCTCAGCTCGGTGCTGCTGTACGGCCTCAAGCTGC
AGCGCGAGAGCGCGGTCAGCAACCTGCAGCAGGGCACCCTCCTCAGCACC
GCCCTCGCCGCCTGCTTCACCTACTGGGCCCTCGCCTCCGCCTTCTACTA
CTTCCTCTGCTTCATGGTCAACACCAACATGACCCTCTTCCAGGTCGCCT
CCTCCACC
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