mRNA_M-pyrifera_M_contig9335.21554.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig9335.21554.1 vs. uniprot
Match: A0A6H5K2S4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2S4_9PHAE) HSP 1 Score: 368 bits (945), Expect = 2.340e-119 Identity = 246/506 (48.62%), Postives = 296/506 (58.50%), Query Frame = 1
Query: 1 AMTWKDRQRTRVPSFDLDDNPFCLERRANEERHKMQLNKNPSLLKLTSADIRRTASFMVDDQKPFREFSRKKQQLLAWSLRDASAFGKFGQT--DHTHAEKTFRRSKTVPSIVGDIDVDVFFGTPK--SG--LRRRNVIDVDVDTLPNLEPYRREVAAVQPITFGHRPVSASRMFNPSTMMTSFGSSXXXXXXGCNAAHSYARNGGAGKGASTGRARRAVRQVPGRVPGLSAPMLKELLLGQ-PRPRGGEAGRGSIPAAGFVDGDTHRGPLLGPRGHREGGVEGSERYAKGAGGVVLSQDKEDQLSDAS----KSNVSEWRSADATGRGRRTPDAAAWLKGSSLVGLPGRSGVVGESSLEEAEELRRIFSDARPQWDGTPLPLPAPKDVRRPINSLLQPDPDERLRDKIVKSRKAAAGIPVTSWSLMEEREKMLLP--RTPATRWEAPPATPRAVIACEEVKRLAEYRREKDGAMARRIREAELSAFYDKIPPSEKLYRDTLALAK 1479
AMTWKDRQRTRVP DLDDNPFC+ERR NEE H MQLNK KPFREFSRKK+ LLAWS+R ASA Q+ + TH T R S TV S + D+ FF + SG L + ++VDVDTLP LEPYRREV A QPITFGHRP+SASRMFNP TM TS G + GG R P R GLSAPMLK LL G P GG A V H+ L P G+ S A +VL D ++ L+D+S K + S+WRS D GRG + +WL+ SS GL +G + +E +EL RIFS RP WDG P PLPAP+ RR I+SLL PDPDERLRDK++KSRKAAAG+PVT+ S +ERE+ L P TP RWE PATPRAVIA +E++RL+E R E+D AMA+++R+AELS + KI PSEKLYR+TL +A+
Sbjct: 19 AMTWKDRQRTRVPVVDLDDNPFCVERRTNEEWHMMQLNK-----------------------KPFREFSRKKRNLLAWSIRAASASDAAAQSTANKTHMP-TRRLSTTVRSDLDGTDIGEFFNMERGMSGRVLHPTDRVEVDVDTLPTLEPYRREVVAQQPITFGHRPLSASRMFNPCTMATSCGIPSDGHHPSTGGIRGRKKGGGGHXXXXXXX--RGRNSKPRRTTGLSAPMLKALLRGDTPTGEGGAA---------LVTASQHQQELFEPNGNIV-----SRDSAPKPNYLVL--DGQEDLTDSSVNSEKLDESKWRSVDDLGRGEALGELESWLQTSSHSGLGHGRRRLGNT--KEGQELHRIFSSERPPWDGAPAPLPAPQHTRRAISSLLMPDPDERLRDKLIKSRKAAAGVPVTASSTKDERERELRPFNPTPIGRWEVCPATPRAVIARQEIRRLSELREERDRAMAKKVRQAELSVLFKKIAPSEKLYRNTLQIAQ 480
BLAST of mRNA_M-pyrifera_M_contig9335.21554.1 vs. uniprot
Match: A0A8K1C8G0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8G0_PYTOL) HSP 1 Score: 57.8 bits (138), Expect = 1.790e-5 Identity = 47/169 (27.81%), Postives = 73/169 (43.20%), Query Frame = 1
Query: 19 RQRTRVPSFDLDDNPFCLERRANEERHKMQLNKNPSLLKLTSADIRRTASFMVDDQKPFREFSRKKQQLLAWSLRDASAFGKFGQTDHTHAEKTFRRSKTVPSIVGDIDVDVFFGTPKSG--LRRRNVIDVDVDTLPNLEPYRREVAAVQPITFGHRPVSASRMFNPST 519
++R RVP D+D NPFC+ER+ +E NKNP T I+++ + + F ++A S +F T + +++ V V +D PK+ +N + V P Y QP++FGHRP SASRM++P T
Sbjct: 31 KKRVRVPRVDVDANPFCVERQLADEYALHNFNKNPRFYLNT---IKQSPPRIEKNPHNHSSFINDAADMMASSGFSPRIRAEF--TTPSAPSVSYKPMDYVAPSVISVDPSDLRSIPKNHPLSPEKNAVHVVSKFTPPTHAYYGSHKTTQPVSFGHRPDSASRMYDPLT 194
BLAST of mRNA_M-pyrifera_M_contig9335.21554.1 vs. uniprot
Match: A0A024UA32_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UA32_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 6.260e-5 Identity = 55/175 (31.43%), Postives = 73/175 (41.71%), Query Frame = 1
Query: 1 AMTWKDRQRTRVPSFDLDDNPFCLERRANEERHKMQLNKNPSL-LKLTSADIRRTASFMVDDQKPFREFS-RKKQQLLAWSLRDASAFGKFGQTDHTHAEKTFRRSKTVPSIVGDIDVDVFFGTPKSGLRRRNVIDVDVDTLPNLEPYRREVAAVQPITFGHRPVSASRMFNPST 519
A++ ++RTRVP D DDNPFC +R+ ++ NKNP L K T RTA Q P R Q DA++ +H +F P+ I + P + RR+ P + A +PITFGHRP SASR FNP T
Sbjct: 31 ALSTLSKKRTRVPKID-DDNPFCTDRQLQDDIALAAFNKNPQLNAKRTPFTTPRTA------QNPHNHTDIRVPPQRQPHVFHDANS---------SHVAVSF------PAYHASISI----AKPYAASTRRS------------SPPTQHEAVKKPITFGHRPTSASRHFNPVT 167 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9335.21554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig9335.21554.1 >prot_M-pyrifera_M_contig9335.21554.1 ID=prot_M-pyrifera_M_contig9335.21554.1|Name=mRNA_M-pyrifera_M_contig9335.21554.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=501bp MTWKDRQRTRVPSFDLDDNPFCLERRANEERHKMQLNKNPSLLKLTSADIback to top mRNA from alignment at M-pyrifera_M_contig9335:1495..6546+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig9335.21554.1 ID=mRNA_M-pyrifera_M_contig9335.21554.1|Name=mRNA_M-pyrifera_M_contig9335.21554.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5052bp|location=Sequence derived from alignment at M-pyrifera_M_contig9335:1495..6546+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig9335:1495..6546+ >mRNA_M-pyrifera_M_contig9335.21554.1 ID=mRNA_M-pyrifera_M_contig9335.21554.1|Name=mRNA_M-pyrifera_M_contig9335.21554.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3006bp|location=Sequence derived from alignment at M-pyrifera_M_contig9335:1495..6546+ (Macrocystis pyrifera P11B4 male)back to top |