mRNA_M-pyrifera_M_contig93315.21550.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93315.21550.1
Unique NamemRNA_M-pyrifera_M_contig93315.21550.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93315.21550.1 vs. uniprot
Match: A0A7S4HQM8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HQM8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.900e-40
Identity = 103/289 (35.64%), Postives = 142/289 (49.13%), Query Frame = 1
Query:    1 SWGGNPILVNGTYHLYVTEMAYGCHLSAWQHDSSVVHATSSLPQGPYTKLSTILWPEAHNPATVQLPNGSWAIFHIG--KGDNSSHAPCDKAGSSPNPIPPSTTSSVTK---------------------GTGT-VHISNSPYGPWHAVTTDL--NCNNPAPLILQ-NGTMYLVCKDLGFHMFRSEAVEGPWTHVLDFPKFPVG--MGTWEDPFMYIDNNNNWHVIAHSWNHTN---------DDNISGHYYSPDGITWTASTTQPYGNTAQLSDGSTLKMRTRERPKI 753
            +WGGN I     YHLYV+ M   C L AW  +S V HA S   +GPYT     +   +HNPA + LP+G +AIFHIG   GD +    C            S   +VT+                     G G+ +H+S S  GPW  + T+    CNNP+P +   N T++++C +    + RS ++ GPWT V  F    +G   G +ED F+YID   N+H + H++N T          D  +S H YS DG  W AS  QPYG  + L  G  + + TRERPK+
Sbjct:   80 TWGGNFIFDGEAYHLYVSRMTNNCTLQAWVTNSRVDHAVSKNIEGPYTFKDVAINTWSHNPAVIALPDGGFAIFHIGGGNGDPNGGKNCT-----------SNVEAVTESLLDVSALGRRNARTNEFRAVGVGSSIHVSESLDGPWTPLGTNSIPGCNNPSPFVHPTNRTIFVICNNDS--LLRSNSITGPWTTVTQFQVEHLGGPPGIYEDAFLYIDLRGNFHSLWHAYNTTEHQPHGHECIDSTVSAHAYSKDGHDWFASPVQPYGTQSALLSGDFITVATRERPKL 355          
BLAST of mRNA_M-pyrifera_M_contig93315.21550.1 vs. uniprot
Match: A0A7S3PEF9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEF9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.310e-30
Identity = 90/272 (33.09%), Postives = 125/272 (45.96%), Query Frame = 1
Query:    1 SWGGNPILVNGT--YHLYVTEMAYGCHLSAWQHDSSVVHATSSLPQGPYTKLSTILWPEAHNPATVQLPNG-------SWAIFHIGKGDNSSHAPCDKAGSSPNPIPPSTTSSVTKGTGTVHISNSPYGPWHAVTTDLNCNNPAPLILQNGTMYLVCKDLGFHMFRSEAVEGPWTHVLDFPKFPV----GM-GTWEDPFMYIDNNNNWHVIAHSWNHTN-------DDNISGHYYSPDGITWTASTTQPYGNTAQLSDGSTLKMRTRERPKI 753
            SWGGN I    T  YHL+V+E+  G  L  W   S ++H  S+ P G + K   +L   AHN A V  P          W +FHIG+G+                               +H +++P GPW  +     CNNPAP+   NG++Y+ C   G  +    A  G W  V +  K+P     GM G  EDPF+++D NNNWH I H +N +        +  +SGH +S +GI W  S+ QPY N     D +     T ERPK+
Sbjct:   89 SWGGNIIYDEKTEEYHLFVSEIPGG--LREWTKKSRIIHGVSNDPLGVFKKKDVVLPAWAHNAAPVLAPENYDGNKTLPWFVFHIGQGN-------------------------------LHAASNPNGPWIKLPEFGGCNNPAPMFHNNGSLYVACP--GRILRAICAHMGTWEQVSEI-KYPYIYGNGMPGITEDPFLFMDPNNNWHFITHRYNTSQGYPDRYGEILVSGHAFSENGIDWKFSSEQPYPNYRVYGDNTRKYFATVERPKL 324          
BLAST of mRNA_M-pyrifera_M_contig93315.21550.1 vs. uniprot
Match: A0A7S4FF76_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FF76_9EUGL)

HSP 1 Score: 107 bits (267), Expect = 2.390e-23
Identity = 84/291 (28.87%), Postives = 121/291 (41.58%), Query Frame = 1
Query:    1 SWGGNPIL-VNGTYHLYVTEMAYGCHLSAWQHDSSVVHATSSLPQGPYTKLSTILWPEAHNPATVQLPNGSWAIFHIGKG--DNSSHAPCDKAGSSPNPIPPSTTSS---VTKGTGTVHISNSPYGPWHAVTTDLNCNNPAPLILQNGTMYLVC-------------KDLGFHMFRSEAVEGP--WTHVLDFPKFPVGMGTW-------------EDPFMYIDNNNNWHVIAHSWNHTNDDNIS--------GHYYSPDGITWTASTTQPYGNTAQLSDGSTLKMRTRERP 747
            SWG + +  +   Y ++VTEMA  C L+ W+  S V  ATS+ P GP+ +   +L P   NP  + L NG+  +FH+G+G         C    + PN   P+       + +  G  H+  S  GPW   +    CNNPA L+L+NGT+ L+C             +        S  +  P  WT   D         TW             EDPF++ D N   H++ H+    ++   S        GH YS DG  W  S    Y      +DG+      RERP
Sbjct:   93 SWGASVVQGIGEQYFMFVTEMANHCGLTVWETGSQVALATSNHPLGPFRRTGLLLGPTHGNPQVIYLKNGTLIMFHVGEGAFPKDQLCQCHDGTTVPNSSNPNCVLKSWELQRRGGVFHVGTSITGPWQPKSLGFYCNNPAALLLKNGTVILLCHGSSRCKGCDISLQTTSISSLLSATLRQPPIWTVAADISS------TWRWQSGNKSLSPRNEDPFIWEDPNGYLHMLLHNMVPCSEPEYSKGPGVGCGGHAYSKDGTQWIFSDVAAYTGQVTYTDGTISPPWARERP 377          
BLAST of mRNA_M-pyrifera_M_contig93315.21550.1 vs. uniprot
Match: A0A7S2SR57_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SR57_9STRA)

HSP 1 Score: 102 bits (255), Expect = 7.350e-22
Identity = 78/282 (27.66%), Postives = 126/282 (44.68%), Query Frame = 1
Query:    1 SWGGNPILVNGTYHLYVTEMAYGCHLSAWQHDSSVVHATSSLPQGPYTKLSTILWPEAHNPATVQLPNGSWAIFHIGKGDNSSHAPCDKA-GSSPNPI-------------------------PPSTTSSVTKGTGTVHISNSPYGPWH----AVTTDLNCN-NPAPLILQNGTMYLVCKDLGFHMFRSEAVEGPWTHVLDFPKFPVGMGTWEDPFMYIDNNNNWHVIAHSWNHTNDDNISGHYYSPDGITWTASTTQPYGNTAQLSDGSTLKMRTRERPKI 753
            +WGGN I    TYH + +EM   C L++W  +S VV ATS+ P G + K    L   AHNP   +  N ++ +FHIG         C +  G+SP  +                          PS  +     T  +  ++S  GPW     ++  D+  N NPAP++L+NGT+ +V       +  +++ +GP+       +        EDPF+Y+D   N+H ++H+    +  +   H +S DG+ WT +     G   +     T+    RERPK+
Sbjct:   94 TWGGNIIKEGDTYHGFFSEMGGHCGLTSWAKNSRVVRATSNSPGGRFEKQQVALPIWAHNPQITKA-NDTFLLFHIGSAAGVPETSCSEGTGTSPCKLFGKGFGFGCTWPLATEESTYSFSSSEPSRNTREVNFTFPISFASSIEGPWQQHNASIDFDVGSNANPAPIVLENGTVIMVFNANNMSLAVADSWKGPYKL-----RSTGACANGEDPFLYVDKRGNFHCLSHAAPFKDAFHSIAHSFSSDGLHWTKTEKAVAGAVVEFEGNRTVVFSKRERPKL 369          
BLAST of mRNA_M-pyrifera_M_contig93315.21550.1 vs. uniprot
Match: A0A7S3C3S3_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C3S3_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 2.250e-21
Identity = 70/226 (30.97%), Postives = 104/226 (46.02%), Query Frame = 1
Query:  133 GPYTKLSTILWPEAHNPATVQLPNGSWAIFHIGKGDNSSHAPCDKAGSSPNPIPPSTTSSVTKGTGTVHISNSPYGPWHAVTTDLNCNNPAPLILQNGTMYLVCKDLGFHMFRSEAV-EGPWTHVLDFPKFPVGMGTW-------EDPFMYIDNNNNWHVIAHSW----------NHTNDDNISGHYYSPDGITWTA-STTQPYGNTAQLSDGSTLKMRTRERPKI 753
            G +T     L  E+HN + ++ PNGS+ ++HIG G                            G+   H +  P GPW+ +     CNNPAPL+L+NG+    C D GF ++R++ V +G W+ V     FP   G         EDP+++ D   N H++AH +          N T    +SGH +S DG+TW   S  QPY      ++G+T    T ERP +
Sbjct:    1 GVFTLADVALAKESHNASPLRAPNGSYILWHIGSGGG--------------------------GSSFAHHAEVPAGPWYPLRGP-RCNNPAPLMLRNGSALCGCNDGGFKIYRTDDVFKGEWSFVTTM-SFPASWGADAHEYLKNEDPYLWEDYRGNLHLLAHRYDYRDGYPPNPNQTMPILVSGHGFSTDGVTWHFNSERQPYDAVVTFANGTTQPFSTFERPHL 198          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93315.21550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S4HQM8_9STRA2.900e-4035.64Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3PEF9_9STRA1.310e-3033.09Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S4FF76_9EUGL2.390e-2328.87Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2SR57_9STRA7.350e-2227.66Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A7S3C3S3_9EUKA2.250e-2130.97Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93315contigM-pyrifera_M_contig93315:2..754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue1.9e-21
Seed eggNOG ortholog227086.JGI_V11_68238
Hectar predicted targeting categoryother localisation
EggNOG OGs2CNF1@1,2QVSS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size753
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.234299-CDS-M-pyrifera_M_contig93315:1..7541622816845.234299-CDS-M-pyrifera_M_contig93315:1..754Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93315 2..754 +
1692278212.2440965-CDS-M-pyrifera_M_contig93315:1..7541692278212.2440965-CDS-M-pyrifera_M_contig93315:1..754Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93315 2..754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93315.21550.1prot_M-pyrifera_M_contig93315.21550.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93315 2..754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93315.21550.1

>prot_M-pyrifera_M_contig93315.21550.1 ID=prot_M-pyrifera_M_contig93315.21550.1|Name=mRNA_M-pyrifera_M_contig93315.21550.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=251bp
SWGGNPILVNGTYHLYVTEMAYGCHLSAWQHDSSVVHATSSLPQGPYTKL
STILWPEAHNPATVQLPNGSWAIFHIGKGDNSSHAPCDKAGSSPNPIPPS
TTSSVTKGTGTVHISNSPYGPWHAVTTDLNCNNPAPLILQNGTMYLVCKD
LGFHMFRSEAVEGPWTHVLDFPKFPVGMGTWEDPFMYIDNNNNWHVIAHS
WNHTNDDNISGHYYSPDGITWTASTTQPYGNTAQLSDGSTLKMRTRERPK
I
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mRNA from alignment at M-pyrifera_M_contig93315:2..754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93315.21550.1 ID=mRNA_M-pyrifera_M_contig93315.21550.1|Name=mRNA_M-pyrifera_M_contig93315.21550.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=753bp|location=Sequence derived from alignment at M-pyrifera_M_contig93315:2..754+ (Macrocystis pyrifera P11B4 male)
AGTTGGGGAGGTAATCCGATCTTGGTGAACGGAACGTATCACTTGTACGT GACAGAAATGGCGTATGGTTGCCATTTGTCAGCATGGCAACACGATTCAA GCGTTGTTCATGCCACTTCATCACTTCCACAAGGACCATATACCAAGTTA TCCACTATTCTGTGGCCAGAAGCTCACAATCCAGCAACAGTCCAACTTCC CAATGGTTCTTGGGCTATTTTCCACATTGGCAAAGGAGACAATTCTTCCC ACGCTCCTTGTGACAAAGCGGGATCCTCACCCAACCCCATTCCTCCATCC ACAACATCATCTGTCACGAAAGGCACTGGTACAGTTCACATTTCCAACTC ACCTTATGGCCCATGGCATGCTGTGACAACAGACTTGAACTGCAACAACC CCGCACCTCTTATTCTCCAAAACGGGACCATGTACCTTGTTTGCAAGGAT TTAGGGTTTCATATGTTCCGTTCTGAAGCAGTCGAAGGTCCATGGACACA TGTATTGGACTTTCCAAAGTTTCCAGTAGGTATGGGAACGTGGGAGGACC CATTTATGTACATTGACAACAACAACAATTGGCACGTCATTGCACATTCT TGGAACCACACGAATGACGACAACATTTCAGGTCACTACTATTCCCCAGA TGGAATCACATGGACAGCTTCAACAACACAACCATACGGCAACACCGCAC AACTTTCTGATGGAAGCACTCTGAAAATGCGCACCAGAGAACGCCCAAAA ATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93315:2..754+

>mRNA_M-pyrifera_M_contig93315.21550.1 ID=mRNA_M-pyrifera_M_contig93315.21550.1|Name=mRNA_M-pyrifera_M_contig93315.21550.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1506bp|location=Sequence derived from alignment at M-pyrifera_M_contig93315:2..754+ (Macrocystis pyrifera P11B4 male)
AGTTGGGGAGGTAATCCGATCTTGGTGAACGGAACGTATCACTTGTACGT
GACAGAAATGGCGTATGGTTGCCATTTGTCAGCATGGCAACACGATTCAA
GCGTTGTTCATGCCACTTCATCACTTCCACAAGGACCATATACCAAGTTA
TCCACTATTCTGTGGCCAGAAGCTCACAATCCAGCAACAGTCCAACTTCC
CAATGGTTCTTGGGCTATTTTCCACATTGGCAAAGGAGACAATTCTTCCC
ACGCTCCTTGTGACAAAGCGGGATCCTCACCCAACCCCATTCCTCCATCC
ACAACATCATCTGTCACGAAAGGCACTGGTACAGTTCACATTTCCAACTC
ACCTTATGGCCCATGGCATGCTGTGACAACAGACTTGAACTGCAACAACC
CCGCACCTCTTATTCTCCAAAACGGGACCATGTACCTTGTTTGCAAGGAT
TTAGGGTTTCATATGTTCCGTTCTGAAGCAGTCGAAGGTCCATGGACACA
TGTATTGGACTTTCCAAAGTTTCCAGTAGGTATGGGAACGTGGGAGGACC
CATTTATGTACATTGACAACAACAACAATTGGCACGTCATTGCACATTCT
TGGAACCACACGAATGACGACAACATTTCAGGTCACTACTATTCCCCAGA
TGGAATCACATGGACAGCTTCAACAACACAACCATACGGCAACACCGCAC
AACTTTCTGATGGAAGCACTCTGAAAATGCGCACCAGAGAACGCCCAAAA
ATCAGTTGGGGAGGTAATCCGATCTTGGTGAACGGAACGTATCACTTGTA
CGTGACAGAAATGGCGTATGGTTGCCATTTGTCAGCATGGCAACACGATT
CAAGCGTTGTTCATGCCACTTCATCACTTCCACAAGGACCATATACCAAG
TTATCCACTATTCTGTGGCCAGAAGCTCACAATCCAGCAACAGTCCAACT
TCCCAATGGTTCTTGGGCTATTTTCCACATTGGCAAAGGAGACAATTCTT
CCCACGCTCCTTGTGACAAAGCGGGATCCTCACCCAACCCCATTCCTCCA
TCCACAACATCATCTGTCACGAAAGGCACTGGTACAGTTCACATTTCCAA
CTCACCTTATGGCCCATGGCATGCTGTGACAACAGACTTGAACTGCAACA
ACCCCGCACCTCTTATTCTCCAAAACGGGACCATGTACCTTGTTTGCAAG
GATTTAGGGTTTCATATGTTCCGTTCTGAAGCAGTCGAAGGTCCATGGAC
ACATGTATTGGACTTTCCAAAGTTTCCAGTAGGTATGGGAACGTGGGAGG
ACCCATTTATGTACATTGACAACAACAACAATTGGCACGTCATTGCACAT
TCTTGGAACCACACGAATGACGACAACATTTCAGGTCACTACTATTCCCC
AGATGGAATCACATGGACAGCTTCAACAACACAACCATACGGCAACACCG
CACAACTTTCTGATGGAAGCACTCTGAAAATGCGCACCAGAGAACGCCCA
AAAATC
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