mRNA_M-pyrifera_M_contig93287.21539.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93287.21539.1
Unique NamemRNA_M-pyrifera_M_contig93287.21539.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93287.21539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93287contigM-pyrifera_M_contig93287:2..628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size627
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.8394039-CDS-M-pyrifera_M_contig93287:1..6281622816844.8394039-CDS-M-pyrifera_M_contig93287:1..628Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93287 2..628 -
1692278212.0745776-CDS-M-pyrifera_M_contig93287:1..6281692278212.0745776-CDS-M-pyrifera_M_contig93287:1..628Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93287 2..628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93287.21539.1prot_M-pyrifera_M_contig93287.21539.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93287 2..628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93287.21539.1

>prot_M-pyrifera_M_contig93287.21539.1 ID=prot_M-pyrifera_M_contig93287.21539.1|Name=mRNA_M-pyrifera_M_contig93287.21539.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=209bp
VGVSDYELERARNIQQNLEMLQQLGLMGGAPPAGLAPASGSEGSLALINM
SNETKKRRRSTPSAQKKKRKLAAASTPTGRYSLRSRAPAVAEEAPAHPGD
GGGWREEQRRREEEELRNIVYDDSSVLQYICGAAVEAAPVGPLPAVGAGK
VLGLEPVRRGGEEELAFSTGQLSRVYSIDVDAARGLLAAGGHGGLVQVFG
LPSVLTGRA
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mRNA from alignment at M-pyrifera_M_contig93287:2..628-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93287.21539.1 ID=mRNA_M-pyrifera_M_contig93287.21539.1|Name=mRNA_M-pyrifera_M_contig93287.21539.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=627bp|location=Sequence derived from alignment at M-pyrifera_M_contig93287:2..628- (Macrocystis pyrifera P11B4 male)
GTTGGAGTGTCTGACTACGAGCTCGAGCGAGCAAGGAACATCCAGCAGAA
CCTGGAGATGCTGCAGCAGCTGGGCCTGATGGGCGGCGCGCCTCCTGCAG
GCCTGGCACCTGCCAGCGGCTCGGAGGGGTCGCTTGCATTGATCAACATG
TCGAATGAGACGAAGAAGCGCAGGCGCTCCACGCCGAGCGCCCAGAAGAA
GAAGAGAAAGCTTGCAGCCGCTTCCACGCCCACCGGAAGGTATTCCCTGA
GGAGCAGAGCGCCTGCAGTGGCTGAAGAGGCGCCCGCGCACCCCGGAGAC
GGCGGCGGCTGGAGGGAAGAGCAGAGGAGGCGAGAGGAGGAGGAGCTGAG
GAACATCGTCTACGATGACAGCTCTGTCCTCCAGTACATCTGTGGCGCCG
CTGTTGAGGCCGCGCCTGTTGGGCCGCTCCCTGCAGTGGGCGCCGGCAAG
GTGCTCGGCCTGGAGCCAGTGCGGCGTGGCGGCGAGGAAGAGCTGGCCTT
CTCCACTGGACAGCTCTCGCGCGTGTACAGCATCGACGTCGACGCCGCCA
GAGGGCTGCTCGCTGCCGGCGGCCACGGCGGCCTCGTGCAGGTCTTTGGC
CTGCCTTCCGTGTTGACCGGGAGGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93287:2..628-

>mRNA_M-pyrifera_M_contig93287.21539.1 ID=mRNA_M-pyrifera_M_contig93287.21539.1|Name=mRNA_M-pyrifera_M_contig93287.21539.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1254bp|location=Sequence derived from alignment at M-pyrifera_M_contig93287:2..628- (Macrocystis pyrifera P11B4 male)
GTTGGAGTGTCTGACTACGAGCTCGAGCGAGCAAGGAACATCCAGCAGAA
CCTGGAGATGCTGCAGCAGCTGGGCCTGATGGGCGGCGCGCCTCCTGCAG
GCCTGGCACCTGCCAGCGGCTCGGAGGGGTCGCTTGCATTGATCAACATG
TCGAATGAGACGAAGAAGCGCAGGCGCTCCACGCCGAGCGCCCAGAAGAA
GAAGAGAAAGCTTGCAGCCGCTTCCACGCCCACCGGAAGGTATTCCCTGA
GGAGCAGAGCGCCTGCAGTGGCTGAAGAGGCGCCCGCGCACCCCGGAGAC
GGCGGCGGCTGGAGGGAAGAGCAGAGGAGGCGAGAGGAGGAGGAGCTGAG
GAACATCGTCTACGATGACAGCTCTGTCCTCCAGTACATCTGTGGCGCCG
CTGTTGAGGCCGCGCCTGTTGGGCCGCTCCCTGCAGTGGGCGCCGGCAAG
GTGCTCGGCCTGGAGCCAGTGCGGCGTGGCGGCGAGGAAGAGCTGGCCTT
CTCCACTGGACAGCTCTCGCGCGTGTACAGCATCGACGTCGACGCCGCCA
GAGGGCTGCTCGCTGCCGGCGGCCACGGCGGCCTCGTGCAGGTCTTTGGC
CTGCCTTCCGTGTTGACCGGGAGGGCGGTTGGAGTGTCTGACTACGAGCT
CGAGCGAGCAAGGAACATCCAGCAGAACCTGGAGATGCTGCAGCAGCTGG
GCCTGATGGGCGGCGCGCCTCCTGCAGGCCTGGCACCTGCCAGCGGCTCG
GAGGGGTCGCTTGCATTGATCAACATGTCGAATGAGACGAAGAAGCGCAG
GCGCTCCACGCCGAGCGCCCAGAAGAAGAAGAGAAAGCTTGCAGCCGCTT
CCACGCCCACCGGAAGGTATTCCCTGAGGAGCAGAGCGCCTGCAGTGGCT
GAAGAGGCGCCCGCGCACCCCGGAGACGGCGGCGGCTGGAGGGAAGAGCA
GAGGAGGCGAGAGGAGGAGGAGCTGAGGAACATCGTCTACGATGACAGCT
CTGTCCTCCAGTACATCTGTGGCGCCGCTGTTGAGGCCGCGCCTGTTGGG
CCGCTCCCTGCAGTGGGCGCCGGCAAGGTGCTCGGCCTGGAGCCAGTGCG
GCGTGGCGGCGAGGAAGAGCTGGCCTTCTCCACTGGACAGCTCTCGCGCG
TGTACAGCATCGACGTCGACGCCGCCAGAGGGCTGCTCGCTGCCGGCGGC
CACGGCGGCCTCGTGCAGGTCTTTGGCCTGCCTTCCGTGTTGACCGGGAG
GGCG
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