mRNA_M-pyrifera_M_contig93247.21536.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93247.21536.1
Unique NamemRNA_M-pyrifera_M_contig93247.21536.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93247.21536.1 vs. uniprot
Match: A0A5A8CI69_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CI69_CAFRO)

HSP 1 Score: 213 bits (542), Expect = 1.210e-59
Identity = 118/210 (56.19%), Postives = 153/210 (72.86%), Query Frame = 1
Query:   28 AATRIQAAFRGFRARVLRNEELWRRETGAREGWMRQLRADERFLDKEIAKRVKRRARENLELQIARMAAEWERACDEVAAFEFDFLNLHMERQKLSPRAIQQGWAGQLQEDSEKHRVWVTQAKAKALFEVALDLRALKRHKEEDDERLQDLLARKREVETRWADERVLLIRRSNERLWAEKRVEQAKTAAAERRKWQVQFYTDAGKPDLR 657
            AA RIQA FR +RARVLRNE LW RET +RE WM  LR+++R+ D EI +RVK R RE L+  +     EW + CD+VA +EFD ++L  ER KLSPRA+QQGWA QL+ED+E+HR WV+  K+KALFE AL  R L+  +++ D    DLLA +RE+ETRW DER  L RR NER WA +++E AK AA E+R+W+V+ +T+ GKPDLR
Sbjct:  311 AARRIQALFRSYRARVLRNELLWDRETRSRETWMAILRSEQRWADSEIERRVKLRTREALDDHVRVAELEWRKQCDQVALYEFDLVSLENERLKLSPRAVQQGWAVQLKEDTEQHREWVSDFKSKALFEGALRHRTLRDRRDKADAAAADLLALRRELETRWLDERNALWRRLNERRWAAEKLELAKRAADEKRRWKVKHFTETGKPDLR 520          
BLAST of mRNA_M-pyrifera_M_contig93247.21536.1 vs. uniprot
Match: A0A812VM89_9DINO (MYO5A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VM89_9DINO)

HSP 1 Score: 155 bits (391), Expect = 2.140e-39
Identity = 96/238 (40.34%), Postives = 138/238 (57.98%), Query Frame = 1
Query:   28 AATRIQAAFRGFRARVLRNEELWRRETGAREGWMRQLRADERFLDKEIAKRVKRRARENLELQIARMAAEWERACDEVAAFEFDFLNLHMERQKLSPRAIQQGWAGQLQEDSEKHRVWVTQAKAKALFEVALDLRALKRHKEEDDERLQDLLARKREVETRWADERVLLIRRSNERLWAEKRVEQAKTAAAERRKWQVQFYTDAGKPDLRR-RAGVLMDPALFPQSQSRTLTIAHGDL 738
            AA   Q AFR F A+ +R  +LW R T  R      L A+E FL +   +  +   + N + +IA++   +E   D +   EFD +N+  E  +LSPR +QQGWA QL  D +K+R  V++ KAKALF+VA + R L+R K+E ++ L+D L  K+ +  RW  +R     R NE  W  +++  AK A AE+RKW+V FYTD GKPDL+R +     +P  FP   SRT  + HGD+
Sbjct:  167 AAVICQTAFRSFLAKNIRTRKLWERGTNLRANSRALLAAEEDFLLRRTERMTRALVKANYDHKIAQLELAFETEVDTIMLNEFDLVNMQNEYTRLSPRGLQQGWAKQLLVDQDKYRAGVSEHKAKALFKVAREQRKLRRLKQEQEDALKDALGLKKYLRERWIADRNAAHERQNEFDWGVRKLNLAKDAGAEKRKWKVHFYTDTGKPDLKRSKPRHAWNPDDFPFKDSRTWNVMHGDI 404          
BLAST of mRNA_M-pyrifera_M_contig93247.21536.1 vs. uniprot
Match: A0A7S1G3Q0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G3Q0_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.010e-36
Identity = 77/181 (42.54%), Postives = 113/181 (62.43%), Query Frame = 1
Query:  127 MRQLRADERFLDKEIAKRVKRRARENLELQIARMAAEWERACDEVAAFEFDFLNLHMERQKLSPRAIQQGWAGQLQEDSEKHRVWVTQAKAKALFEVALDLRALKRHKEEDDERLQDLLARKREVETRWADERVLLIRRSNERLWAEKRVEQAKTAAAERRKWQVQFYTDAGKPDLRRRAG 669
            MR LRA+E +L +EI +  K R ++NL  ++  +   W  + +EV  FE+D + L  ER K+SPRA++QGW  +L ++ E+HRVW T AK KALF+VAL LR ++  KE++D+   DL  R+ +++  W  +R  +    +ER WA     + K  A ++RKW  QFYTD GKPDL R  G
Sbjct:    4 MRTLRAEEVWLAREIHQMKKMRKKDNLGGKLPPLRRAWSDSIEEVRKFEYDLVGLQRERMKMSPRAVEQGWTEELDKNVEQHRVWTTDAKLKALFQVALPLRLMEEEKEKNDQEYADLKYRREQLDEWWRMDRDDMXXXESERKWALHHENRRKNIAGQKRKWAFQFYTDTGKPDLMRPQG 184          
BLAST of mRNA_M-pyrifera_M_contig93247.21536.1 vs. uniprot
Match: A0A7S0PCK3_CAFRO (Hypothetical protein (Fragment) n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PCK3_CAFRO)

HSP 1 Score: 140 bits (354), Expect = 2.410e-35
Identity = 76/134 (56.72%), Postives = 101/134 (75.37%), Query Frame = 1
Query:  256 EVAAFEFDFLNLHMERQKLSPRAIQQGWAGQLQEDSEKHRVWVTQAKAKALFEVALDLRALKRHKEEDDERLQDLLARKREVETRWADERVLLIRRSNERLWAEKRVEQAKTAAAERRKWQVQFYTDAGKPDLR 657
            +VA +EFD ++L  ER KLSPRA+QQGWA QL+ED+E+HR WV+  K+KALFE AL  R L+  +++ D    DLLA +RE+ETRW DER  L RR NER WA +++E AK AA E+R+W+V+ +T+ GKPDLR
Sbjct:    1 QVALYEFDLVSLENERLKLSPRAVQQGWAVQLKEDTEQHREWVSDFKSKALFEGALRHRTLRDRRDKADAVAADLLALRRELETRWLDERNALWRRLNERRWAAEKLELAKRAADEKRRWKVKHFTETGKPDLR 134          
BLAST of mRNA_M-pyrifera_M_contig93247.21536.1 vs. uniprot
Match: A0A2R5GZN0_9STRA (Abnormal spindle-like microcephaly-associated protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZN0_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.330e-20
Identity = 79/243 (32.51%), Postives = 130/243 (53.50%), Query Frame = 1
Query:   16 AAETAATRIQAAFRGFRARVLRNEELWRRETGAREGWMRQLRADERFLDKEIAKRVKRRARENLELQIARMAAE--WERACDEVAAFEFDFLNLHMERQKLSPRAIQQGWAGQLQEDSEKHRVWVTQAKAKALFEVALDLRALKRHKEEDDERLQDLLARKREVETRWADERVLLIRRSNERLWAEKRVEQAKTAAAERRKWQVQFYTDAGKPDLRRRAGVLMDPALFPQSQSRTLTIAHGDL 738
            AA   A  +Q  FRG R R  RN  LW RET  +  +++ LRA++ F+  EI   ++ R R+ L++      AE  +E     V   +FD+  + +ER ++ P A++QGW  +L +   +HR+W+T AK + LF  A   R +   K + + +LQ L  R+  + +        L +R +   W ++R ++ +  A +RR+W V++YTD GK D +RR G   DP++F   +  TL +   DL
Sbjct:  777 AAHAGALVLQRVFRGLRGRWERNRLLWVRETERQRQFIQVLRAEDDFICDEITA-LETRMRDILQVDATLQHAEKQYEDMLHLVREKQFDYEAMQIERGRVDPLAMRQGWTEELDKYVAEHRLWLTNAKFQFLFVGATYYRQVLLDKADLESQLQRLQNRRERICSIRQTFVESLYQRESLARWEQRRRDRRRRIADQRRRWHVKWYTDDGKIDKKRRYGYPWDPSVFAGPERDTLCLGTVDL 1018          
BLAST of mRNA_M-pyrifera_M_contig93247.21536.1 vs. uniprot
Match: A0A7S0PCI0_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PCI0_CAFRO)

HSP 1 Score: 68.6 bits (166), Expect = 1.140e-9
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   28 AATRIQAAFRGFRARVLRNEELWRRETGAREGWMRQLRADERFLDKEIAKRVKRRARENLE 210
            AA RIQA FR +RARVLRNE LW RET +RE WM  LR+++R+ D EI +RVK R RE L+
Sbjct:  419 AARRIQALFRSYRARVLRNELLWDRETRSRETWMAILRSEQRWADSEIERRVKLRTREALD 479          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93247.21536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5A8CI69_CAFRO1.210e-5956.19Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A812VM89_9DINO2.140e-3940.34MYO5A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S1G3Q0_9STRA1.010e-3642.54Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0PCK3_CAFRO2.410e-3556.72Hypothetical protein (Fragment) n=2 Tax=Cafeteria ... [more]
A0A2R5GZN0_9STRA1.330e-2032.51Abnormal spindle-like microcephaly-associated prot... [more]
A0A7S0PCI0_CAFRO1.140e-962.30Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93247contigM-pyrifera_M_contig93247:6..743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue3e-19
Seed eggNOG ortholog65071.PYU1_T013634
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MBXQ@121069,28PRS@1,2QWE8@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size738
Cds size738
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.7281613-CDS-M-pyrifera_M_contig93247:5..7431622816844.7281613-CDS-M-pyrifera_M_contig93247:5..743Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93247 6..743 -
1692278212.021815-CDS-M-pyrifera_M_contig93247:5..7431692278212.021815-CDS-M-pyrifera_M_contig93247:5..743Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93247 6..743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93247.21536.1prot_M-pyrifera_M_contig93247.21536.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93247 6..743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93247.21536.1

>prot_M-pyrifera_M_contig93247.21536.1 ID=prot_M-pyrifera_M_contig93247.21536.1|Name=mRNA_M-pyrifera_M_contig93247.21536.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=246bp
KREVVAAETAATRIQAAFRGFRARVLRNEELWRRETGAREGWMRQLRADE
RFLDKEIAKRVKRRARENLELQIARMAAEWERACDEVAAFEFDFLNLHME
RQKLSPRAIQQGWAGQLQEDSEKHRVWVTQAKAKALFEVALDLRALKRHK
EEDDERLQDLLARKREVETRWADERVLLIRRSNERLWAEKRVEQAKTAAA
ERRKWQVQFYTDAGKPDLRRRAGVLMDPALFPQSQSRTLTIAHGDL
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mRNA from alignment at M-pyrifera_M_contig93247:6..743-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93247.21536.1 ID=mRNA_M-pyrifera_M_contig93247.21536.1|Name=mRNA_M-pyrifera_M_contig93247.21536.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig93247:6..743- (Macrocystis pyrifera P11B4 male)
AAGCGCGAGGTGGTGGCAGCCGAGACGGCCGCCACCCGCATCCAGGCTGC ATTCCGCGGGTTCCGGGCCAGAGTGCTGCGAAACGAGGAGCTGTGGCGGA GGGAGACGGGCGCCAGAGAAGGTTGGATGCGGCAGCTGCGGGCGGACGAG CGGTTTCTGGACAAGGAGATCGCCAAGCGCGTGAAGCGCCGGGCCCGGGA GAATCTGGAGCTGCAAATCGCCAGAATGGCTGCTGAGTGGGAACGGGCCT GCGACGAGGTCGCCGCCTTCGAATTCGACTTCCTCAACCTGCACATGGAG CGCCAGAAGCTCTCGCCGCGCGCCATCCAGCAGGGGTGGGCCGGGCAGCT GCAGGAGGACTCGGAGAAGCACCGCGTGTGGGTGACGCAGGCCAAGGCCA AAGCGCTGTTCGAGGTCGCGCTGGACCTCAGGGCGCTCAAGAGACACAAG GAGGAGGACGACGAGCGCTTGCAAGACCTGCTGGCTCGGAAGAGGGAGGT CGAAACCCGCTGGGCCGATGAGCGAGTGCTTCTCATCCGCCGCAGCAACG AGCGACTGTGGGCCGAGAAACGCGTGGAGCAGGCCAAAACGGCTGCCGCA GAGAGGAGGAAGTGGCAGGTGCAATTCTACACCGACGCAGGGAAGCCAGA CCTGCGCAGGAGGGCAGGCGTGCTGATGGACCCCGCGCTCTTCCCACAGA GCCAGTCCAGAACTCTCACCATCGCACACGGAGACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93247:6..743-

>mRNA_M-pyrifera_M_contig93247.21536.1 ID=mRNA_M-pyrifera_M_contig93247.21536.1|Name=mRNA_M-pyrifera_M_contig93247.21536.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1476bp|location=Sequence derived from alignment at M-pyrifera_M_contig93247:6..743- (Macrocystis pyrifera P11B4 male)
AAGCGCGAGGTGGTGGCAGCCGAGACGGCCGCCACCCGCATCCAGGCTGC
ATTCCGCGGGTTCCGGGCCAGAGTGCTGCGAAACGAGGAGCTGTGGCGGA
GGGAGACGGGCGCCAGAGAAGGTTGGATGCGGCAGCTGCGGGCGGACGAG
CGGTTTCTGGACAAGGAGATCGCCAAGCGCGTGAAGCGCCGGGCCCGGGA
GAATCTGGAGCTGCAAATCGCCAGAATGGCTGCTGAGTGGGAACGGGCCT
GCGACGAGGTCGCCGCCTTCGAATTCGACTTCCTCAACCTGCACATGGAG
CGCCAGAAGCTCTCGCCGCGCGCCATCCAGCAGGGGTGGGCCGGGCAGCT
GCAGGAGGACTCGGAGAAGCACCGCGTGTGGGTGACGCAGGCCAAGGCCA
AAGCGCTGTTCGAGGTCGCGCTGGACCTCAGGGCGCTCAAGAGACACAAG
GAGGAGGACGACGAGCGCTTGCAAGACCTGCTGGCTCGGAAGAGGGAGGT
CGAAACCCGCTGGGCCGATGAGCGAGTGCTTCTCATCCGCCGCAGCAACG
AGCGACTGTGGGCCGAGAAACGCGTGGAGCAGGCCAAAACGGCTGCCGCA
GAGAGGAGGAAGTGGCAGGTGCAATTCTACACCGACGCAGGGAAGCCAGA
CCTGCGCAGGAGGGCAGGCGTGCTGATGGACCCCGCGCTCTTCCCACAGA
GCCAGTCCAGAACTCTCACCATCGCACACGGAGACCTCAAGCGCGAGGTG
GTGGCAGCCGAGACGGCCGCCACCCGCATCCAGGCTGCATTCCGCGGGTT
CCGGGCCAGAGTGCTGCGAAACGAGGAGCTGTGGCGGAGGGAGACGGGCG
CCAGAGAAGGTTGGATGCGGCAGCTGCGGGCGGACGAGCGGTTTCTGGAC
AAGGAGATCGCCAAGCGCGTGAAGCGCCGGGCCCGGGAGAATCTGGAGCT
GCAAATCGCCAGAATGGCTGCTGAGTGGGAACGGGCCTGCGACGAGGTCG
CCGCCTTCGAATTCGACTTCCTCAACCTGCACATGGAGCGCCAGAAGCTC
TCGCCGCGCGCCATCCAGCAGGGGTGGGCCGGGCAGCTGCAGGAGGACTC
GGAGAAGCACCGCGTGTGGGTGACGCAGGCCAAGGCCAAAGCGCTGTTCG
AGGTCGCGCTGGACCTCAGGGCGCTCAAGAGACACAAGGAGGAGGACGAC
GAGCGCTTGCAAGACCTGCTGGCTCGGAAGAGGGAGGTCGAAACCCGCTG
GGCCGATGAGCGAGTGCTTCTCATCCGCCGCAGCAACGAGCGACTGTGGG
CCGAGAAACGCGTGGAGCAGGCCAAAACGGCTGCCGCAGAGAGGAGGAAG
TGGCAGGTGCAATTCTACACCGACGCAGGGAAGCCAGACCTGCGCAGGAG
GGCAGGCGTGCTGATGGACCCCGCGCTCTTCCCACAGAGCCAGTCCAGAA
CTCTCACCATCGCACACGGAGACCTC
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