mRNA_M-pyrifera_M_contig93246.21535.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93246.21535.1
Unique NamemRNA_M-pyrifera_M_contig93246.21535.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93246.21535.1 vs. uniprot
Match: A0A7X7F197_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7F197_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 4.120e-12
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:    1 AVAGVALLVLIAPYLFRFAAVRKLVMRSTMTDFKGTVNVGSAPLGWFSPVRLYDIEVLPPEGPPVMNVASFEGDVPLWRL 240
            AVA + LL+   P+L  F  VR L++R++     G++ VG A LGWFSP+    IE+   +G PV+++   EG+ PLWR+
Sbjct:   29 AVAALVLLIAAIPWLASFGPVRTLLLRASSPRINGSIRVGEAKLGWFSPIHFEQIEIRSHDGDPVVSIPRLEGNRPLWRM 108
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BLAST of mRNA_M-pyrifera_M_contig93246.21535.1 vs. uniprot
Match: A0A356EW62_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356EW62_9PLAN)

HSP 1 Score: 53.1 bits (126), Expect = 2.880e-6
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:    1 AVAGVALLVLI--APYLFRFAAVRKLVMRSTMTDFKGTVNVGSAPLGWFSPVRLYDIEVLPPEGPPVMNVASFEGDVPLWRL 240
            A+  VALLV +   P L   + +    +    TD  GT+ +GSA LGWFSP+R+  +EV   E  PV+ + +  GD  L RL
Sbjct:   45 ALLAVALLVFVWLLPMLIAHSPLLNWAVGKATTDLNGTIAIGSASLGWFSPIRVSGVEVTDREKNPVVELPAVGGDTSLARL 126
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BLAST of mRNA_M-pyrifera_M_contig93246.21535.1 vs. uniprot
Match: A0A7V4HS40_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4HS40_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.030e-5
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:  103 GTVNVGSAPLGWFSPVRLYDIEVLPPEGPPVMNVASFEGD 222
            G V V SA LGWFSP+RLY + ++ P+G PV+ VA   GD
Sbjct:    3 GRVEVSSASLGWFSPLRLYGVRIVAPDGEPVVEVAEARGD 42
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BLAST of mRNA_M-pyrifera_M_contig93246.21535.1 vs. uniprot
Match: A0A7X7F6M9_9BACT (DUF748 domain-containing protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7F6M9_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 4.920e-5
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:   94 DFKGTVNVGSAPLGWFSPVRLYDIEVLPPEGPPVMNVASFEGDVPLWRL 240
            +  GTV +GSA LGWFSPVR+ ++EV  PE   V  + +  GD  L RL
Sbjct:   78 ELNGTVAIGSASLGWFSPVRVSNVEVADPEKNLVFELPAAAGDTSLARL 126
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BLAST of mRNA_M-pyrifera_M_contig93246.21535.1 vs. uniprot
Match: A0A1Z8N4T7_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TMED10 TaxID=1986833 RepID=A0A1Z8N4T7_9PLAN)

HSP 1 Score: 49.3 bits (116), Expect = 6.740e-5
Identity = 24/75 (32.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   16 ALLVLIAPYLFRFAAVRKLVMRSTMTDFKGTVNVGSAPLGWFSPVRLYDIEVLPPEGPPVMNVASFEGDVPLWRL 240
            A+L++  P +    ++R+ ++     +FKGT ++G+A LGWFSP+ L D+ +   +G  ++  AS   D  L++L
Sbjct:   13 AVLIISGPLIVSHTSLRQKIVPWVAPEFKGTXSIGTASLGWFSPIELRDVNLKNDQGQTLLTDASIYLDRTLFKL 87
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BLAST of mRNA_M-pyrifera_M_contig93246.21535.1 vs. uniprot
Match: A0A847GMD2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GMD2_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 6.740e-5
Identity = 23/68 (33.82%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   37 PYLFRFAAVRKLVMRSTMTDFKGTVNVGSAPLGWFSPVRLYDIEVLPPEGPPVMNVASFEGDVPLWRL 240
            P +    ++R+ ++ + ++DF+G+V +GSA LGW SP+  +DIE     G P+ +V S   +  L  L
Sbjct:   44 PVIVAKTSLRQSIVSAALSDFEGSVTIGSASLGWLSPLLAHDIEARDGRGQPLGHVKSLRSEKSLLGL 111
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BLAST of mRNA_M-pyrifera_M_contig93246.21535.1 vs. uniprot
Match: A0A518CEG9_9BACT (Uncharacterized protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=A0A518CEG9_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 9.210e-5
Identity = 24/49 (48.98%), Postives = 28/49 (57.14%), Query Frame = 1 
Query:   94 DFKGTVNVGSAPLGWFSPVRLYDIEVLPPEGPPVMNVASFEGDVPLWRL 240
            D  G V VGSA LGWFSP+ L D+EV+  EG PV  + S      L  L
Sbjct:   54 DLNGKVTVGSASLGWFSPIVLKDVEVVDAEGAPVAEIPSIRVSQSLLSL 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93246.21535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7X7F197_9BACT4.120e-1241.25Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
A0A356EW62_9PLAN2.880e-639.02Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A7V4HS40_9BACT1.030e-555.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7X7F6M9_9BACT4.920e-548.98DUF748 domain-containing protein n=1 Tax=Pirellula... [more]
A0A1Z8N4T7_9PLAN6.740e-532.00Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A847GMD2_9BACT6.740e-533.82Uncharacterized protein n=1 Tax=Candidatus Anammox... [more]
A0A518CEG9_9BACT9.210e-548.98Uncharacterized protein n=1 Tax=Bremerella volcani... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93246contigM-pyrifera_M_contig93246:17..256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.6970375-CDS-M-pyrifera_M_contig93246:16..2561622816844.6970375-CDS-M-pyrifera_M_contig93246:16..256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93246 17..256 -
1692278212.0095754-CDS-M-pyrifera_M_contig93246:16..2561692278212.0095754-CDS-M-pyrifera_M_contig93246:16..256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93246 17..256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93246.21535.1prot_M-pyrifera_M_contig93246.21535.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93246 17..256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93246.21535.1

>prot_M-pyrifera_M_contig93246.21535.1 ID=prot_M-pyrifera_M_contig93246.21535.1|Name=mRNA_M-pyrifera_M_contig93246.21535.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
AVAGVALLVLIAPYLFRFAAVRKLVMRSTMTDFKGTVNVGSAPLGWFSPV
RLYDIEVLPPEGPPVMNVASFEGDVPLWRL
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mRNA from alignment at M-pyrifera_M_contig93246:17..256-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93246.21535.1 ID=mRNA_M-pyrifera_M_contig93246.21535.1|Name=mRNA_M-pyrifera_M_contig93246.21535.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig93246:17..256- (Macrocystis pyrifera P11B4 male)
GCCGTGGCGGGCGTGGCGTTGCTCGTACTGATCGCTCCCTATCTCTTTCG
CTTTGCGGCCGTGCGAAAGCTTGTCATGCGTTCGACGATGACCGATTTCA
AAGGCACGGTCAACGTTGGCAGTGCTCCACTGGGTTGGTTCAGCCCCGTG
CGGTTGTACGACATCGAAGTCCTCCCACCGGAAGGCCCCCCGGTGATGAA
TGTCGCATCTTTTGAGGGCGATGTCCCGCTGTGGCGGCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93246:17..256-

>mRNA_M-pyrifera_M_contig93246.21535.1 ID=mRNA_M-pyrifera_M_contig93246.21535.1|Name=mRNA_M-pyrifera_M_contig93246.21535.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig93246:17..256- (Macrocystis pyrifera P11B4 male)
GCCGTGGCGGGCGTGGCGTTGCTCGTACTGATCGCTCCCTATCTCTTTCG
CTTTGCGGCCGTGCGAAAGCTTGTCATGCGTTCGACGATGACCGATTTCA
AAGGCACGGTCAACGTTGGCAGTGCTCCACTGGGTTGGTTCAGCCCCGTG
CGGTTGTACGACATCGAAGTCCTCCCACCGGAAGGCCCCCCGGTGATGAA
TGTCGCATCTTTTGAGGGCGATGTCCCGCTGTGGCGGCTAGCCGTGGCGG
GCGTGGCGTTGCTCGTACTGATCGCTCCCTATCTCTTTCGCTTTGCGGCC
GTGCGAAAGCTTGTCATGCGTTCGACGATGACCGATTTCAAAGGCACGGT
CAACGTTGGCAGTGCTCCACTGGGTTGGTTCAGCCCCGTGCGGTTGTACG
ACATCGAAGTCCTCCCACCGGAAGGCCCCCCGGTGATGAATGTCGCATCT
TTTGAGGGCGATGTCCCGCTGTGGCGGCTA
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