mRNA_M-pyrifera_M_contig93162.21525.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93162.21525.1
Unique NamemRNA_M-pyrifera_M_contig93162.21525.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93162.21525.1 vs. uniprot
Match: A0A1M5AP73_9FIRM (Ribosome biogenesis GTPase A n=2 Tax=Desulforamulus TaxID=2916693 RepID=A0A1M5AP73_9FIRM)

HSP 1 Score: 84.0 bits (206), Expect = 1.440e-16
Identity = 55/149 (36.91%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   10 KKGAKVGGVPGVTRQVNAIAVCRDPPVYVSDSPGITQPKIDDVATGMRLGICGCLPAKVVDDLDLAISLLEHLAHLQPDDCPISLREKPVIPYEHLQSSPLHALETFGKAMGVLGKGGVVDENAAATKLIAAFRNGHLGRFTLDPIPSK 456
            +K AK G +PGVT+    I    +  + + D+PGI  PK +D   G +L + G +  +V D  ++A+ LL  LA   PD     ++E+  +P E  Q  P   L   G   G+L  GGVVDE  AA  ++  FR G LGR+TLD  P+ 
Sbjct:  145 RKAAKTGDLPGVTKGQQWIRT--EGSLELLDTPGILWPKFEDPEVGYKLAVTGAIKEQVFDVYEVALKLLRWLAEHNPD----KVKERYKLP-ELSQDIP-KLLSDIGARRGMLVSGGVVDEQKAAQLILKEFREGTLGRYTLDVPPAN 285          
BLAST of mRNA_M-pyrifera_M_contig93162.21525.1 vs. uniprot
Match: D5X8L0_THEPJ (Ribosome biogenesis GTPase A n=2 Tax=Thermincola TaxID=278993 RepID=D5X8L0_THEPJ)

HSP 1 Score: 83.6 bits (205), Expect = 2.010e-16
Identity = 54/144 (37.50%), Postives = 76/144 (52.78%), Query Frame = 1
Query:   13 KGA-KVGGVPGVTRQVNAIAVCRDPPVYVSDSPGITQPKIDDVATGMRLGICGCLPAKVVDDLDLAISLLEHLAHLQPDDCPISLREKPVIPYEHLQSSPLHALETFGKAMGVLGKGGVVDENAAATKLIAAFRNGHLGRFTLD 441
            KGA + G  PGVTR    I V RD  + + D+PGI  PK DD   G +L + G +  +V++   + + LL++L  + P+   +  R K     + L   P+  L   G   G+L  GG VD   AA  ++A FR G LGRFTLD
Sbjct:  147 KGATRTGDRPGVTRGKQWIRVGRD--MELLDTPGILWPKFDDPEVGFKLAVTGAIKEEVINVEQVVLKLLKYLKDMHPEK--LKARYK----LDSLSEKPVEILADIGARRGLLIPGGQVDMEKAARVILAEFRTGKLGRFTLD 282          
BLAST of mRNA_M-pyrifera_M_contig93162.21525.1 vs. uniprot
Match: A0A6N8B4J7_9FIRM (Ribosome biogenesis GTPase A n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A6N8B4J7_9FIRM)

HSP 1 Score: 82.4 bits (202), Expect = 5.490e-16
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    7 KKKGAKVGGVPGVTRQVNAIAVCRDPPVYVSDSPGITQPKIDDVATGMRLGICGCLPAKVVDDLDLAISLLEHLAHLQPDDCPISLREKPVIPYEHLQSSPLHALETFGKAMGVLGKGGVVDENAAATKLIAAFRNGHLGRFTLD 441
            ++K  K G  PGVT+    I + +D  + + D+PGI  PK +D   G +L   G +  +V++  ++AI LL  L  + PD   ++ R K     + LQ      L+  G   G+L  GGVVD   A+  L+  FR G LGR TL+
Sbjct:  146 RRKSTKTGDTPGVTKGKQMIKINKD--LELLDTPGILWPKFEDPEVGFKLATTGAIKEQVINVEEVAIFLLNLLVEIVPDG--LATRYK----LDQLQQDKFELLQQIGAKRGMLQSGGVVDTQKASVLLLKEFREGKLGRITLE 282          
BLAST of mRNA_M-pyrifera_M_contig93162.21525.1 vs. uniprot
Match: A0A0M2U6J9_9FIRM (Ribosome biogenesis GTPase A n=1 Tax=Clostridiales bacterium PH28_bin88 TaxID=1605376 RepID=A0A0M2U6J9_9FIRM)

HSP 1 Score: 81.3 bits (199), Expect = 1.260e-15
Identity = 54/144 (37.50%), Postives = 75/144 (52.08%), Query Frame = 1
Query:   16 GAKVGGVPGVTRQVNAIAVCRDPPVYVSDSPGITQPKIDDVATGMRLGICGCLPAKVVDDLDLAISLLEHLAHLQPDDCPISLREKPVIPYEHLQSSPLHALETFGKAMGVLGKGGVVDENAAATKLIAAFRNGHLGRFTLDPI 447
            GA+V   PGVTR    I V     V + D+PG+  PK+ D     RL + G +   V++  +LA+ LL+ L     + CP  + E+  +  E    +P   LE  G   G L +GGVVD + AA  L+  FR G LGRFTLD +
Sbjct:  136 GARVEDRPGVTRGPQWINVAGS--VQLMDTPGLLWPKLGDPKVAFRLAVTGAIREPVLEGEELALRLLDWLR----ETCPEMVLERYRL--EEWHPNPRAMLEAIGSRRGYLLRGGVVDVDKAAAILLQEFRQGTLGRFTLDSV 271          
BLAST of mRNA_M-pyrifera_M_contig93162.21525.1 vs. uniprot
Match: A0A2B7XLC9_9EURO (Mitochondrial GTPase 1 n=1 Tax=Blastomyces parvus TaxID=2060905 RepID=A0A2B7XLC9_9EURO)

HSP 1 Score: 81.6 bits (200), Expect = 1.840e-15
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 1
Query:    4 RKKKGAKVGGVPGVTRQVNA-IAVCRDP--PVYVSDSPGITQPKIDDVATGMRLGICGCLPAKVVDDLDLAISLLEHLAHLQPDDCPISLREKPVIPYEHLQSSPLHALETFGKAMGVLGKGGVVDENAAATKLIAAFRNGHLGRFTLDPI 447
            +++K AK G  PGVTR+V+  I V       VY+ D+PG+  P + D  + ++L +CGC+  K++  + LA  LL H+    P         +    Y    +  +H L  FG   G   KGG +D ++AA K++  +R G  G F LD +
Sbjct:  158 KRRKAAKTGADPGVTRKVSTGIKVFEGTRGSVYLHDTPGVFMPYMPDPESMLKLALCGCVQRKIIPAITLADYLLYHINLNNP---------RVYAKYSEPTNDIMHFLGAFGGKAGCFAKGGTIDLDSAARKMVHWYREGKFGAFILDDV 299          
BLAST of mRNA_M-pyrifera_M_contig93162.21525.1 vs. uniprot
Match: A0A494X194_9FIRM (Ribosome biogenesis GTPase A n=2 Tax=Desulfofundulus TaxID=2282741 RepID=A0A494X194_9FIRM)

HSP 1 Score: 80.5 bits (197), Expect = 2.690e-15
Identity = 53/143 (37.06%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   22 KVGGVPGVTRQVNAIAVCRDPPVYVSDSPGITQPKIDDVATGMRLGICGCLPAKVVDDLDLAISLLEHLAHLQPDDCPISLREKPVIPYEHLQSSPLHALETFGKAMGVLGKGGVVDENAAATKLIAAFRNGHLGRFTLDPIP 450
            + G  PGVTR    + + R   V + D+PG+  PK DD    ++L   G +  +V D  ++A  L E L        P SL+E+  +  E L +     LE  G   G++G GGVVD   AA  L+  FR G LGRFTLD  P
Sbjct:  147 RTGNRPGVTRGQQWVRLARG--VELLDTPGVLWPKFDDPQVALKLAATGAIKEEVFDVEEVAAWLAEWLLQ----SFPASLKERYRL--EELPAQGHRVLELIGAKRGLVGPGGVVDSYRAAVHLLKEFREGRLGRFTLDVPP 281          
BLAST of mRNA_M-pyrifera_M_contig93162.21525.1 vs. uniprot
Match: UPI001F4C4339 (ribosome biogenesis GTPase YlqF n=1 Tax=Candidatus Contubernalis alkalaceticum TaxID=338645 RepID=UPI001F4C4339)

HSP 1 Score: 80.1 bits (196), Expect = 3.550e-15
Identity = 47/146 (32.19%), Postives = 77/146 (52.74%), Query Frame = 1
Query:   19 AKVGGVPGVTRQVNAIAVCRDPPVYVSDSPGITQPKIDDVATGMRLGICGCLPAKVVDDLDLAISLLEHLAHLQPDDCPISLREKPVIPYEHLQSSPLHALETFGKAMGVLGKGGVVDENAAATKLIAAFRNGHLGRFTLDPIPSK 456
            A+ GG+PG+TR    I +   P + + D+PGI  PKI     G  L + G +  +++++ ++++ LL+ L+   P+   + LR K       +  +    LE  G+  G L  GG +D +  +  L+  FR G LGRFTLD +P K
Sbjct:  139 ARTGGIPGITRGKQWIKI--PPNIELLDTPGILWPKISSAQMGFHLAVTGAIKFELINNQEMSLQLLDFLSKDFPER--LKLRYK----LSEIPFTMPELLEAIGRRRGFLLSGGDIDFSRTSEVLLKEFREGLLGRFTLDVVPQK 276          
BLAST of mRNA_M-pyrifera_M_contig93162.21525.1 vs. uniprot
Match: C8W5A5_DESAS (Ribosome biogenesis GTPase A n=1 Tax=Desulfofarcimen acetoxidans (strain ATCC 49208 / DSM 771 / KCTC 5769 / VKM B-1644 / 5575) TaxID=485916 RepID=C8W5A5_DESAS)

HSP 1 Score: 79.3 bits (194), Expect = 7.310e-15
Identity = 53/145 (36.55%), Postives = 77/145 (53.10%), Query Frame = 1
Query:    7 KKKGAKVGGVPGVTRQVNAIAVCRDPPVYVSDSPGITQPKIDDVATGMRLGICGCLPAKVVDDLDLAISLLEHLAHLQPDDCPISLREKPVIPYEHLQSSPLHALETFGKAMGVLGKGGVVDENAAATKLIAAFRNGHLGRFTLD 441
            K+K  K G  PGVTR    I V +D  + + D+PGI  PK DD     +L + G + ++V+D  +L+  L   L     D+ P  L E+  +   +L +     L   G++ G L  GG+VD + AA  L+  FR+G LGRFTLD
Sbjct:  142 KRKITKTGDKPGVTRGQQWIKVAKD--LELLDTPGILWPKFDDQEVAYKLAVTGAIKSEVLDIKELSFRLALWLR----DNHPHVLLERYKL--SNLPNKAEELLSAIGRSRGFLVSGGIVDNHKAAVLLLKEFRDGLLGRFTLD 278          
BLAST of mRNA_M-pyrifera_M_contig93162.21525.1 vs. uniprot
Match: A0A3G1KQ78_9FIRM (Ribosome biogenesis GTPase A n=1 Tax=Candidatus Formimonas warabiya TaxID=1761012 RepID=A0A3G1KQ78_9FIRM)

HSP 1 Score: 79.3 bits (194), Expect = 7.760e-15
Identity = 53/141 (37.59%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   19 AKVGGVPGVTRQVNAIAVCRDPPVYVSDSPGITQPKIDDVATGMRLGICGCLPAKVVDDLDLAISLLEHLAHLQPDDCPISLREKPVIPYEHLQSSPLHALETFGKAMGVLGKGGVVDENAAATKLIAAFRNGHLGRFTLD 441
            AK G  PG+T+    I V     + + D+PG+  PK +D ATG++L I G +   V    D+A +L+  LA         +LRE+  I    +   PL  LE  GK  G L  GGVV  +  A  L+  FRNG LGRF+L+
Sbjct:  150 AKTGNKPGITKGPQWIRVVEG--LELLDTPGLLWPKFEDRATGLKLAITGAVSDLVYPVEDVARNLVHFLAEHDAG----TLRERYKI--GEVDPDPLKTLEAIGKKRGFLATGGVVKMDQTAVMLLQEFRNGKLGRFSLE 282          
BLAST of mRNA_M-pyrifera_M_contig93162.21525.1 vs. uniprot
Match: A3DDG9_ACET2 (Ribosome biogenesis GTPase A n=2 Tax=Eubacteriales TaxID=186802 RepID=A3DDG9_ACET2)

HSP 1 Score: 79.3 bits (194), Expect = 8.040e-15
Identity = 53/145 (36.55%), Postives = 74/145 (51.03%), Query Frame = 1
Query:   10 KKGAKVGGVPGVTRQVNAIAVCRDPPVYVSDSPGITQPKIDDVATGMRLGICGCLPAKVVDDLDLAISLLEHLAHLQPDDCPISLREKPVIPYEHLQSSP-LHALETFGKAMGVLGKGGVVDENAAATKLIAAFRNGHLGRFTLD 441
            KK A  G  PGVTR    I V  +  + + D+PGI  PK +D   G+ L + G +  +++D ++LA  LLEHL+   P++  I  R K     E LQ       LE  GK  G +  GG VD    A  ++  FR G +GR TL+
Sbjct:  143 KKSAVTGDRPGVTRNKQWINVNNE--IQLMDTPGILWPKFEDKTVGINLAVTGAIKDEIIDTVELASILLEHLSKTYPEN--IKKRYK----LESLQDKKGYELLEEAGKKRGCIISGGEVDLTRIAAIVLDEFRGGKIGRITLE 279          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93162.21525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M5AP73_9FIRM1.440e-1636.91Ribosome biogenesis GTPase A n=2 Tax=Desulforamulu... [more]
D5X8L0_THEPJ2.010e-1637.50Ribosome biogenesis GTPase A n=2 Tax=Thermincola T... [more]
A0A6N8B4J7_9FIRM5.490e-1634.48Ribosome biogenesis GTPase A n=1 Tax=Firmicutes ba... [more]
A0A0M2U6J9_9FIRM1.260e-1537.50Ribosome biogenesis GTPase A n=1 Tax=Clostridiales... [more]
A0A2B7XLC9_9EURO1.840e-1532.45Mitochondrial GTPase 1 n=1 Tax=Blastomyces parvus ... [more]
A0A494X194_9FIRM2.690e-1537.06Ribosome biogenesis GTPase A n=2 Tax=Desulfofundul... [more]
UPI001F4C43393.550e-1532.19ribosome biogenesis GTPase YlqF n=1 Tax=Candidatus... [more]
C8W5A5_DESAS7.310e-1536.55Ribosome biogenesis GTPase A n=1 Tax=Desulfofarcim... [more]
A0A3G1KQ78_9FIRM7.760e-1537.59Ribosome biogenesis GTPase A n=1 Tax=Candidatus Fo... [more]
A3DDG9_ACET28.040e-1536.55Ribosome biogenesis GTPase A n=2 Tax=Eubacteriales... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93162contigM-pyrifera_M_contig93162:12..470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score86.3
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog121759.XP_010762818.1
Preferred namemtg1
KEGG koko:K19828
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019538,GO:0019866,GO:0022613,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032543,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:0140053,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Mitochondrial GTPase involved in assembly of the large ribosomal subunit. Plays a role in expression of the mitochondrial translational machinery
EggNOG OGs20E9U@147545,38FQX@33154,3B2SD@33183,3FJNR@34383,3NXC2@4751,3QKV8@4890,COG1161@1,KOG2485@2759
COG Functional cat.S
Best tax levelOnygenales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03029
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.1345694-CDS-M-pyrifera_M_contig93162:11..4701622816844.1345694-CDS-M-pyrifera_M_contig93162:11..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93162 12..470 +
1692278211.6750393-CDS-M-pyrifera_M_contig93162:11..4701692278211.6750393-CDS-M-pyrifera_M_contig93162:11..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93162 12..470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93162.21525.1prot_M-pyrifera_M_contig93162.21525.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93162 12..470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93162.21525.1

>prot_M-pyrifera_M_contig93162.21525.1 ID=prot_M-pyrifera_M_contig93162.21525.1|Name=mRNA_M-pyrifera_M_contig93162.21525.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
KRKKKGAKVGGVPGVTRQVNAIAVCRDPPVYVSDSPGITQPKIDDVATGM
RLGICGCLPAKVVDDLDLAISLLEHLAHLQPDDCPISLREKPVIPYEHLQ
SSPLHALETFGKAMGVLGKGGVVDENAAATKLIAAFRNGHLGRFTLDPIP
SK*
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mRNA from alignment at M-pyrifera_M_contig93162:12..470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93162.21525.1 ID=mRNA_M-pyrifera_M_contig93162.21525.1|Name=mRNA_M-pyrifera_M_contig93162.21525.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig93162:12..470+ (Macrocystis pyrifera P11B4 male)
AAACGGAAGAAGAAAGGGGCCAAGGTAGGGGGGGTGCCAGGGGTCACGAG GCAAGTGAATGCAATCGCCGTGTGTAGGGATCCACCAGTGTATGTGAGCG ATTCCCCAGGAATCACGCAACCCAAAATCGACGACGTTGCGACAGGAATG CGACTCGGAATTTGCGGCTGCCTTCCTGCCAAAGTTGTGGATGATCTCGA CCTCGCGATTTCCCTCCTGGAACACCTTGCCCACCTTCAACCCGACGACT GCCCGATTTCGCTTCGCGAGAAACCAGTCATTCCGTACGAGCACCTCCAG AGCTCCCCTCTCCACGCCCTGGAAACGTTTGGAAAAGCAATGGGGGTCTT GGGAAAAGGGGGGGTGGTCGACGAAAACGCGGCAGCAACCAAACTCATTG CGGCTTTTCGCAATGGCCACTTGGGGCGATTTACACTCGACCCGATCCCA AGCAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93162:12..470+

>mRNA_M-pyrifera_M_contig93162.21525.1 ID=mRNA_M-pyrifera_M_contig93162.21525.1|Name=mRNA_M-pyrifera_M_contig93162.21525.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig93162:12..470+ (Macrocystis pyrifera P11B4 male)
AAACGGAAGAAGAAAGGGGCCAAGGTAGGGGGGGTGCCAGGGGTCACGAG
GCAAGTGAATGCAATCGCCGTGTGTAGGGATCCACCAGTGTATGTGAGCG
ATTCCCCAGGAATCACGCAACCCAAAATCGACGACGTTGCGACAGGAATG
CGACTCGGAATTTGCGGCTGCCTTCCTGCCAAAGTTGTGGATGATCTCGA
CCTCGCGATTTCCCTCCTGGAACACCTTGCCCACCTTCAACCCGACGACT
GCCCGATTTCGCTTCGCGAGAAACCAGTCATTCCGTACGAGCACCTCCAG
AGCTCCCCTCTCCACGCCCTGGAAACGTTTGGAAAAGCAATGGGGGTCTT
GGGAAAAGGGGGGGTGGTCGACGAAAACGCGGCAGCAACCAAACTCATTG
CGGCTTTTCGCAATGGCCACTTGGGGCGATTTACACTCGACCCGATCCCA
AGCAAGTAGAAACGGAAGAAGAAAGGGGCCAAGGTAGGGGGGGTGCCAGG
GGTCACGAGGCAAGTGAATGCAATCGCCGTGTGTAGGGATCCACCAGTGT
ATGTGAGCGATTCCCCAGGAATCACGCAACCCAAAATCGACGACGTTGCG
ACAGGAATGCGACTCGGAATTTGCGGCTGCCTTCCTGCCAAAGTTGTGGA
TGATCTCGACCTCGCGATTTCCCTCCTGGAACACCTTGCCCACCTTCAAC
CCGACGACTGCCCGATTTCGCTTCGCGAGAAACCAGTCATTCCGTACGAG
CACCTCCAGAGCTCCCCTCTCCACGCCCTGGAAACGTTTGGAAAAGCAAT
GGGGGTCTTGGGAAAAGGGGGGGTGGTCGACGAAAACGCGGCAGCAACCA
AACTCATTGCGGCTTTTCGCAATGGCCACTTGGGGCGATTTACACTCGAC
CCGATCCCAAGCAAGTAG
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