mRNA_M-pyrifera_M_contig93151.21522.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93151.21522.1
Unique NamemRNA_M-pyrifera_M_contig93151.21522.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93151.21522.1 vs. uniprot
Match: A0A7S1C448_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C448_9STRA)

HSP 1 Score: 238 bits (607), Expect = 8.980e-70
Identity = 125/252 (49.60%), Postives = 172/252 (68.25%), Query Frame = 1
Query:    1 PDPRKMQQHVRAFEGIVQSCGAQLALSHSAFRGARQAAIARGVLGSLFGATDGHVMQRLRWVEVDGWMERDRDGDVGDGLEALERDEVAFLQYTSGSTSAPKGVMVTHNSLASNLRTIVRSLEATDDTVVVSWLPQYHDMGLVGSLSGAVYCGGSGVYASPLSFVQHPPLWVDLISRFHATHLQAPNFGYRLTARKTIERLSPDQRQALSLASVRHMFNAAEPVTAAAIDSFNATFRSAHLSPAATAPGYGL 756
            PDPR++++++  F  I  S GA++AL+   +  A++A   + V        +      ++WV  DG ++++      D ++  E  +VAFLQYTSGST+ PKGV VTH +L+ NL+TIVRSLEA DDTVVVSWLPQYHDMGL+GS  G +YCGGSG Y SP+SF+++P +W+  +S++H THLQAP+F Y+LTARK   + S  +   L L+SVRH+FNAAEP+   A+  F  TF  A LSPAA +PGYGL
Sbjct:  111 PDPRRLKKNMYMFASIQASSGARVALTSKQYNWAKRATGIKDVFSK-----EKAKWPDVKWVVTDGLVDKEAPPRAADEVDGAEPADVAFLQYTSGSTAEPKGVRVTHANLSHNLQTIVRSLEAVDDTVVVSWLPQYHDMGLIGSHLGTLYCGGSGAYMSPISFIKNPAVWIASVSKYHGTHLQAPSFAYKLTARKFASQ-SRWKAADLDLSSVRHIFNAAEPIDYVAVKQFCDTFAPAKLSPAAFSPGYGL 356          
BLAST of mRNA_M-pyrifera_M_contig93151.21522.1 vs. uniprot
Match: A0A7S4I4Q8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I4Q8_9STRA)

HSP 1 Score: 214 bits (545), Expect = 2.160e-64
Identity = 115/243 (47.33%), Postives = 152/243 (62.55%), Query Frame = 1
Query:   28 VRAFEGIVQSCGAQLALSHSAFRGARQAAIARGVLGSLFGATDGHVMQRLRWVEVDGWMERDRDGDVGDGLEALERDEVAFLQYTSGSTSAPKGVMVTHNSLASNLRTIVRSLEATDDTVVVSWLPQYHDMGLVGSLSGAVYCGGSGVYASPLSFVQHPPLWVDLISRFHATHLQAPNFGYRLTARKTIERLSPDQRQALSLASVRHMFNAAEPVTAAAIDSFNATFRSAHLSPAATAPGYGL 756
            +R F GIV+ CGA+ AL+   +RGA++    +  L      T     + L W+  DG + + + G+    L      + AFLQYTSGSTSAPKGVM+TH +LA NL  I   LEA DDTVVVSWLPQYHDMGL+GS  G ++CGGSG Y SPL+F+Q P +W++ +S++  THLQAPNF ++LTARK   +  P     L L SVRH+ N AEP T++++D+F   F    L      P YGL
Sbjct:  116 IRGFAGIVEGCGARFALTCGEYRGAKKLGEMKDKLSRFKKGTTSPWPENLEWITTDGDISK-KGGEDDPPLPHPSPSDTAFLQYTSGSTSAPKGVMITHGNLAHNLHIITSELEAADDTVVVSWLPQYHDMGLIGSYLGILHCGGSGYYMSPLTFLQRPMMWIEAVSKYGGTHLQAPNFAFKLTARKFDPKSYPPGW--LKLNSVRHIINGAEPCTSSSMDAFQDAFGVYGLRGEVMFPTYGL 355          
BLAST of mRNA_M-pyrifera_M_contig93151.21522.1 vs. uniprot
Match: A0A2R5GLR3_9STRA (Polyketide synthase (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLR3_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.430e-63
Identity = 125/248 (50.40%), Postives = 164/248 (66.13%), Query Frame = 1
Query:   16 MQQHVRAFEGIVQSCGAQLALSHSAFRGARQAAIARGVLGSLFGATDGHVMQRLRWVEVD-GWMERDRDGDVGDGLEALERDEVAFLQYTSGSTSAPKGVMVTHNSLASNLRTIVRSLEATDDTVVVSWLPQYHDMGLVGSLSGAVYCGGSGVYASPLSFVQHPPLWVDLISRFHATHLQAPNFGYRLTARKTIERLSPDQRQALSLASVRHMFNAAEPVTAAAIDSFNATFRSAHLSPAATAPGYGL 756
            M + ++ F  +  SC A +AL+ SA+        A+ V G     T G     LRW+  D G +     G   + + A  RD +AFLQYTSGSTSAPKGVM+TH +LA NL TI+ +L+A+DDTVV SWLPQYHDMGL+GS  GA+YCGGSG Y SP+SF++ PPLW+ + S++ ATHLQAPNF Y+L  RK  E+        LSLA+VRH+FNAAEP+   A++ F  TF++A L  +A +PGYGL
Sbjct:  202 MSKDLKMFVAVQSSCKATVALTSSAYD------FAKRVTGFKQLFTGGAKWPSLRWLVSDAGKLPNGVRGSYQEVVPAPMRDTLAFLQYTSGSTSAPKGVMITHGNLAHNLATIILALKASDDTVVASWLPQYHDMGLIGSHLGALYCGGSGTYMSPISFIKDPPLWLRIASQYGATHLQAPNFAYKLVVRKWREQ--GGNPADLSLATVRHIFNAAEPIELDAMEDFMKTFKAAGLQGSAMSPGYGL 441          
BLAST of mRNA_M-pyrifera_M_contig93151.21522.1 vs. uniprot
Match: A0A6H5KNT1_9PHAE (Carrier domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNT1_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.580e-58
Identity = 119/253 (47.04%), Postives = 157/253 (62.06%), Query Frame = 1
Query:    1 PDPRKMQQHVRAFEGIVQSCGAQLALSHSAFRGARQAAIARGVLGSLFGATDGHVMQRLRWVEVDGWME-RDRDGDVGDGLEALERDEVAFLQYTSGSTSAPKGVMVTHNSLASNLRTIVRSLEATDDTVVVSWLPQYHDMGLVGSLSGAVYCGGSGVYASPLSFVQHPPLWVDLISRFHATHLQAPNFGYRLTARKTIERLSPDQRQALSLASVRHMFNAAEPVTAAAIDSFNATFRSAHLSPAATAPGYGL 756
            PDPR++++ +  F+ I  S GA +AL++  +  A++ A  +G+         G     L WV  D        D D G      +  +VAF+QYTSGSTS PKGVM+TH++LA NL+ I+  L A DDTVVV+WLPQYHDMGL+GS+   ++ GGSG Y SP+SF++ P LWV+LISR   TH+QAPNF Y LTARK    L+ D +  L L+ VRHM NAAEPV  A+ID F + F +  L      P YGL
Sbjct:   95 PDPRRLKKDLHMFKAIQGSSGATVALTNRNYNYAKKMADIKGMFSG------GASWPELNWVVTDSLASVTAADEDTG-RFSVPDPTDVAFIQYTSGSTSEPKGVMITHSNLAHNLKLILAGLSAVDDTVVVAWLPQYHDMGLIGSVLALLFSGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKF---LALDPQPKLDLSCVRHMINAAEPVDTASIDRFYSVFEAHGLKRGVIFPTYGL 337          
BLAST of mRNA_M-pyrifera_M_contig93151.21522.1 vs. uniprot
Match: A0A7S3GWC0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWC0_9STRA)

HSP 1 Score: 203 bits (517), Expect = 3.830e-58
Identity = 118/263 (44.87%), Postives = 158/263 (60.08%), Query Frame = 1
Query:    1 PDPRKMQQHVRAFEGIVQSCGAQLALSHSAFRGARQAAIARGVLGSLFGATDGHVMQRLRWVEVDGWMERDRDGDVGDGLEALER-----DEVAFLQYTSGSTSAPKGVMVTHNSLASNLRTIVRSLEATDDTVVVSWLPQYHDMGLVGSLSGAVYCGGSGVYASPLSFVQHPPLWVDLISRFHATHLQAPNFGYRLTARKTIERLSPDQR------QALSLASVRHMFNAAEPVTAAAIDSFNATFRSAHLSPAATAPGYGL 756
            PDPRK+++ +  F  I  SCGA   L++S++  A++       L  +F +T+      L+W+ VD  +++ +  D      A++      + +AFLQYTSGSTS PKGVM++H +LA NL  I++ L+A   TVVVSWLPQYHDMGL+GS  G VYCGG G Y SP+SF++ P +WV  +SRF ATH QAPNF Y L +RK  E L  +          L L+S+RHM NAAEPV   AI  F  TF +  L      P YGL
Sbjct:   97 PDPRKLKKDLHHFVNIQLSCGATTVLTNSSYNFAKKIVD----LTHIF-STESARWPELKWISVDDTLKKGKTVDKSKSKAAIKLPTVLPESIAFLQYTSGSTSDPKGVMISHENLAHNLTLIIKELQADGSTVVVSWLPQYHDMGLIGSYLGIVYCGGRGNYISPISFLKDPTVWVKAMSRFKATHTQAPNFAYPLVSRKFKEALHSEPHFQSKVASTLDLSSLRHMINAAEPVDYHAIMEFYDTFGAYGLKNNVVIPTYGL 354          
BLAST of mRNA_M-pyrifera_M_contig93151.21522.1 vs. uniprot
Match: A0A7K0Q2V6_9ACTN (AMP-binding protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7K0Q2V6_9ACTN)

HSP 1 Score: 192 bits (488), Expect = 3.990e-58
Identity = 95/182 (52.20%), Postives = 130/182 (71.43%), Query Frame = 1
Query:  139 LFGATDGHVMQRLRWVEVDGWMERDRDGDVGDGLEALERDEVAFLQYTSGSTSAPKGVMVTHNSLASNLRTIVRSLEATDDTVVVSWLPQYHDMGLVGSLSGAVYCGGSGVYASPLSFVQHPPLWVDLISRFHATHLQAPNFGYRLTARKTIERLSPDQR--QALSLASVRHMFNAAEPVTA 678
            +FG         +RW+E +  + +         ++  E+DE+AFLQYTSGSTS PKGVM+TH +L+ N+ TIV+SL+A   TVVVSWLPQYHDMGL+GS    +YCGGSGVY SP+SF+++PP+W++ +S +  THLQAPNF Y L+ARK  + L+  +   +  SL+S++HMFNAAEPVTA
Sbjct:   10 IFGTKSSQTWPDVRWIETNAALPKLSSKSK---IDVNEKDELAFLQYTSGSTSEPKGVMLTHGNLSHNITTIVKSLKADTKTVVVSWLPQYHDMGLIGSYLSLIYCGGSGVYMSPISFIRNPPMWIESVSSYKGTHLQAPNFAYILSARK-FKALAEKKGNIEGFSLSSIKHMFNAAEPVTA 187          
BLAST of mRNA_M-pyrifera_M_contig93151.21522.1 vs. uniprot
Match: A0A7R9U2M5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2M5_9STRA)

HSP 1 Score: 205 bits (521), Expect = 1.100e-57
Identity = 121/254 (47.64%), Postives = 158/254 (62.20%), Query Frame = 1
Query:    1 PDPRKMQQHVRAFEGIVQSCGAQLALSHSAFRGARQAAIARGVLGSLFGATDGHVM-QRLRWVEVDGWMERDRDGDVGDGL-EALERDEVAFLQYTSGSTSAPKGVMVTHNSLASNLRTIVRSLEATDDTVVVSWLPQYHDMGLVGSLSGAVYCGGSGVYASPLSFVQHPPLWVDLISRFHATHLQAPNFGYRLTARKTIERLSPDQRQALSLASVRHMFNAAEPVTAAAIDSFNATFRSAHLSPAATAPGYGL 756
            PDP K+++ +  F  I  + GA  AL+ S++   ++AA  R +L       D H     LRWV  D    + +   V   L E  + ++VAFLQ+TSGSTS PKGV +T  +LA NL+ I   L+A  DTVVVSWLPQYHDMGL+G+  G ++CGG G Y SPL+F++ P LW++LIS++  TH+QAPNF Y L ARK  + L   QR +L L+ VRHM NAAEPVTA AI+ F  TF S  L      P YGL
Sbjct:   94 PDPSKLRKDLHMFCAIHDTSGATTALTSSSYNYLKKAAGFRRILTG-----DEHRWPDSLRWVITDTGGRKTKKAVVDGNLSEGADSNDVAFLQFTSGSTSEPKGVQITFGNLAHNLKAITTDLQAVQDTVVVSWLPQYHDMGLIGAYLGILFCGGHGYYMSPLTFIKRPVLWMELISKYRGTHMQAPNFTYILCARK-FKALPEKQRPSLDLSCVRHMINAAEPVTAGAIEGFYDTFASYGLGRVVF-PTYGL 340          
BLAST of mRNA_M-pyrifera_M_contig93151.21522.1 vs. uniprot
Match: A0A067BNK6_SAPPC (AMP-binding domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BNK6_SAPPC)

HSP 1 Score: 197 bits (502), Expect = 2.750e-57
Identity = 118/256 (46.09%), Postives = 155/256 (60.55%), Query Frame = 1
Query:    1 PDPRKMQQHVRAFEGIVQSCGAQLALSHSAFRGARQAAIARGVLGSLFGATDGHVMQRLRWVEVDGWMERDR----DGDVGDGLEALERDEVAFLQYTSGSTSAPKGVMVTHNSLASNLRTIVRSLEATDDTVVVSWLPQYHDMGLVGSLSGAVYCGGSGVYASPLSFVQHPPLWVDLISRFHATHLQAPNFGYRLTARKTIERLSPDQRQALSLASVRHMFNAAEPVTAAAIDSFNATFRSAHLSPAATAPGYGL 756
            PDPRK+++ +  F  +  + GA+ AL+ +++   ++      +L      T     +R  W ++D W+E DR           L A   D +AFLQYTSGSTS PKGVM++H +L SNL  IV +L A  D VVVSWLPQYHDMGL+G+  G ++ GG+GVY SP SF+++P LW+ LI++  ATHLQAPNF Y L ARK  +  SP     L L+SVRHM N AEPV   AID+F ATF    L      P YGL
Sbjct:   98 PDPRKLRKDIVMFTTVCSNAGAKTALTCASYNHVKK------ILDIKQKMT---FSERYPWPDLD-WVETDRLIHAPAPSSMTLAAPSADAIAFLQYTSGSTSDPKGVMISHGNLTSNLHLIVDALAARQDAVVVSWLPQYHDMGLIGAYLGILFSGGNGVYLSPFSFIKNPSLWIALIAKHKATHLQAPNFAYALCARK-FQSPSPT----LDLSSVRHMINGAEPVDVHAIDAFYATFSPLGLPRGVIRPTYGL 338          
BLAST of mRNA_M-pyrifera_M_contig93151.21522.1 vs. uniprot
Match: A0A5A8DCC1_CAFRO (AMP-binding domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DCC1_CAFRO)

HSP 1 Score: 196 bits (499), Expect = 2.940e-57
Identity = 121/272 (44.49%), Postives = 159/272 (58.46%), Query Frame = 1
Query:    1 PDPRKMQQHVRAFEGIVQSCGAQLALSHSAFRGARQ----AAIARGVLGSLFGATDGHVMQ--RLRWVEVDGWMERDRDGDVGDGLEA----------LERDEVAFLQYTSGSTSAPKGVMVTHNSLASNLRTIVRSLEATDDTVVVSWLPQYHDMGLVGSLSGAVYCGGSGVYASPLSFVQHPPLWVDLISRFHATHLQAPNFGYRLTARKT----IERLSPDQRQALSLASVRHMFNAAEPVTAAAIDSFNATFRSAHLSPAATAPGYGL 756
            P+PR +  H+RAF  I  +CGA   L+H  F  AR+    AA     L ++ G + G   +   L W +V   M     G  G  + A          L  D  AFLQ+TSGSTS PKGV+++H S+  NLRTIV +L A  DT VVSWLPQYHDMGL+GS  G ++CGG+G Y SP++FVQ+P + + ++    A+H+Q PNFGY LTARKT    +   S  +     LA V H+FNAAEPVT+AA D+F        +  AA +PGYGL
Sbjct:  112 PNPRGLAHHLRAFASIADTCGATAVLTHRDFSSARRLGAMAAAGARALAAVMGGSAGGKSEWPDLPWWDVTSVMSAA--GHKGHEVAAPAGFLSPTPRLMADP-AFLQFTSGSTSEPKGVVISHRSMTHNLRTIVHALRAGQDTRVVSWLPQYHDMGLIGSHCGLLFCGGTGTYFSPIAFVQNPAMLLSIMEASGASHVQMPNFGYALTARKTSSCPVAGSSGGEAGVAGLAPVAHLFNAAEPVTSAACDAFVRVATMRGMRAAAMSPGYGL 380          
BLAST of mRNA_M-pyrifera_M_contig93151.21522.1 vs. uniprot
Match: A0A485LHG9_9STRA (Aste57867_21441 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHG9_9STRA)

HSP 1 Score: 203 bits (516), Expect = 5.240e-57
Identity = 112/252 (44.44%), Postives = 154/252 (61.11%), Query Frame = 1
Query:    1 PDPRKMQQHVRAFEGIVQSCGAQLALSHSAFRGARQAAIARGVLGSLFGATDGHVMQRLRWVEVDGWMERDRDGDVGDGLEALERDEVAFLQYTSGSTSAPKGVMVTHNSLASNLRTIVRSLEATDDTVVVSWLPQYHDMGLVGSLSGAVYCGGSGVYASPLSFVQHPPLWVDLISRFHATHLQAPNFGYRLTARKTIERLSPDQRQALSLASVRHMFNAAEPVTAAAIDSFNATFRSAHLSPAATAPGYGL 756
            PDPRK+++ +  F  +  + GA++AL++S +  A++    +  +      ++ +    L+WVE +              L     DE+AFLQYTSGSTS PKGVM++H +LA NL +I  +LEA DD+VVVSWLPQYHDMGL+G+  G ++ GG GVY SP SF+++P LW+ LIS++ ATHLQAPNF Y LTARK     S      L L+S+RHM N AEP+   A+D+F   F    L      P YGL
Sbjct:  103 PDPRKIRKDIVMFTTVCSNAGAKIALTNSTYNYAKKVLDIKQKITF----SEKYPWPDLQWVETEALAATQAPSATS--LSPPSLDELAFLQYTSGSTSDPKGVMISHGNLAHNLTSISDALEARDDSVVVSWLPQYHDMGLIGAYLGVLFTGGHGVYMSPFSFIKNPSLWIRLISQYKATHLQAPNFAYALTARKFAS--SSSSGSPLDLSSIRHMINGAEPIDGEALDAFYRMFAPLGLRDGVVRPTYGL 346          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93151.21522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C448_9STRA8.980e-7049.60Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S4I4Q8_9STRA2.160e-6447.33Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2R5GLR3_9STRA1.430e-6350.40Polyketide synthase (Fragment) n=1 Tax=Hondaea fer... [more]
A0A6H5KNT1_9PHAE1.580e-5847.04Carrier domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S3GWC0_9STRA3.830e-5844.87Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A7K0Q2V6_9ACTN3.990e-5852.20AMP-binding protein n=1 Tax=Actinomycetia bacteriu... [more]
A0A7R9U2M5_9STRA1.100e-5747.64Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A067BNK6_SAPPC2.750e-5746.09AMP-binding domain-containing protein (Fragment) n... [more]
A0A5A8DCC1_CAFRO2.940e-5744.49AMP-binding domain-containing protein n=1 Tax=Cafe... [more]
A0A485LHG9_9STRA5.240e-5744.44Aste57867_21441 protein n=1 Tax=Aphanomyces stella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93151contigM-pyrifera_M_contig93151:2..757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.4
Seed ortholog evalue1.2e-49
Seed eggNOG ortholog2880.D8LBI2
Hectar predicted targeting categoryother localisation
GOsGO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009273,GO:0009987,GO:0042546,GO:0044085,GO:0044238,GO:0071554,GO:0071704,GO:0071766,GO:0071840,GO:1901576
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0318@1,KOG3628@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size756
Cds size741
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.0230691-UTR-M-pyrifera_M_contig93151:1..161622816844.0230691-UTR-M-pyrifera_M_contig93151:1..16Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93151 2..16 +
1692278211.626208-UTR-M-pyrifera_M_contig93151:1..161692278211.626208-UTR-M-pyrifera_M_contig93151:1..16Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93151 2..16 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.035013-CDS-M-pyrifera_M_contig93151:16..7571622816844.035013-CDS-M-pyrifera_M_contig93151:16..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93151 17..757 +
1692278211.6375432-CDS-M-pyrifera_M_contig93151:16..7571692278211.6375432-CDS-M-pyrifera_M_contig93151:16..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93151 17..757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93151.21522.1prot_M-pyrifera_M_contig93151.21522.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93151 17..757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93151.21522.1

>prot_M-pyrifera_M_contig93151.21522.1 ID=prot_M-pyrifera_M_contig93151.21522.1|Name=mRNA_M-pyrifera_M_contig93151.21522.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=247bp
MQQHVRAFEGIVQSCGAQLALSHSAFRGARQAAIARGVLGSLFGATDGHV
MQRLRWVEVDGWMERDRDGDVGDGLEALERDEVAFLQYTSGSTSAPKGVM
VTHNSLASNLRTIVRSLEATDDTVVVSWLPQYHDMGLVGSLSGAVYCGGS
GVYASPLSFVQHPPLWVDLISRFHATHLQAPNFGYRLTARKTIERLSPDQ
RQALSLASVRHMFNAAEPVTAAAIDSFNATFRSAHLSPAATAPGYGL
back to top

mRNA from alignment at M-pyrifera_M_contig93151:2..757+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93151.21522.1 ID=mRNA_M-pyrifera_M_contig93151.21522.1|Name=mRNA_M-pyrifera_M_contig93151.21522.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig93151:2..757+ (Macrocystis pyrifera P11B4 male)
CCAGACCCTCGAAAGATGCAGCAACATGTGCGTGCATTTGAGGGTATTGT GCAGTCTTGTGGGGCTCAGCTGGCTTTGTCACATTCTGCATTCCGTGGTG CACGTCAAGCTGCGATTGCACGAGGGGTATTGGGGTCTTTGTTTGGAGCA ACTGATGGGCATGTGATGCAAAGACTTCGGTGGGTAGAAGTGGATGGATG GATGGAGCGCGATAGAGACGGAGATGTGGGAGACGGATTGGAAGCATTAG AAAGGGATGAGGTTGCCTTTTTGCAATATACTTCTGGCAGCACATCTGCA CCGAAGGGAGTGATGGTCACACACAATTCGTTGGCTAGCAATTTGCGGAC AATTGTTCGCTCACTGGAAGCTACAGATGACACTGTGGTTGTGTCTTGGC TCCCACAGTACCATGACATGGGGCTTGTGGGAAGCCTCAGTGGAGCAGTG TATTGTGGTGGGAGTGGAGTATATGCGTCTCCTCTCTCCTTTGTGCAGCA TCCTCCCTTGTGGGTGGACCTCATATCTCGCTTCCATGCCACACACCTCC AAGCTCCAAACTTTGGGTATCGCCTCACTGCGCGAAAAACCATTGAGCGT CTTTCTCCAGATCAGCGCCAAGCTCTCTCGCTTGCATCTGTCAGACACAT GTTCAATGCCGCAGAGCCCGTCACTGCTGCTGCAATTGACAGCTTTAACG CCACCTTCCGATCTGCGCATCTCTCTCCAGCTGCCACTGCTCCAGGCTAT GGGCTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig93151:2..757+

>mRNA_M-pyrifera_M_contig93151.21522.1 ID=mRNA_M-pyrifera_M_contig93151.21522.1|Name=mRNA_M-pyrifera_M_contig93151.21522.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1482bp|location=Sequence derived from alignment at M-pyrifera_M_contig93151:2..757+ (Macrocystis pyrifera P11B4 male)
ATGCAGCAACATGTGCGTGCATTTGAGGGTATTGTGCAGTCTTGTGGGGC
TCAGCTGGCTTTGTCACATTCTGCATTCCGTGGTGCACGTCAAGCTGCGA
TTGCACGAGGGGTATTGGGGTCTTTGTTTGGAGCAACTGATGGGCATGTG
ATGCAAAGACTTCGGTGGGTAGAAGTGGATGGATGGATGGAGCGCGATAG
AGACGGAGATGTGGGAGACGGATTGGAAGCATTAGAAAGGGATGAGGTTG
CCTTTTTGCAATATACTTCTGGCAGCACATCTGCACCGAAGGGAGTGATG
GTCACACACAATTCGTTGGCTAGCAATTTGCGGACAATTGTTCGCTCACT
GGAAGCTACAGATGACACTGTGGTTGTGTCTTGGCTCCCACAGTACCATG
ACATGGGGCTTGTGGGAAGCCTCAGTGGAGCAGTGTATTGTGGTGGGAGT
GGAGTATATGCGTCTCCTCTCTCCTTTGTGCAGCATCCTCCCTTGTGGGT
GGACCTCATATCTCGCTTCCATGCCACACACCTCCAAGCTCCAAACTTTG
GGTATCGCCTCACTGCGCGAAAAACCATTGAGCGTCTTTCTCCAGATCAG
CGCCAAGCTCTCTCGCTTGCATCTGTCAGACACATGTTCAATGCCGCAGA
GCCCGTCACTGCTGCTGCAATTGACAGCTTTAACGCCACCTTCCGATCTG
CGCATCTCTCTCCAGCTGCCACTGCTCCAGGCTATGGGCTTATGCAGCAA
CATGTGCGTGCATTTGAGGGTATTGTGCAGTCTTGTGGGGCTCAGCTGGC
TTTGTCACATTCTGCATTCCGTGGTGCACGTCAAGCTGCGATTGCACGAG
GGGTATTGGGGTCTTTGTTTGGAGCAACTGATGGGCATGTGATGCAAAGA
CTTCGGTGGGTAGAAGTGGATGGATGGATGGAGCGCGATAGAGACGGAGA
TGTGGGAGACGGATTGGAAGCATTAGAAAGGGATGAGGTTGCCTTTTTGC
AATATACTTCTGGCAGCACATCTGCACCGAAGGGAGTGATGGTCACACAC
AATTCGTTGGCTAGCAATTTGCGGACAATTGTTCGCTCACTGGAAGCTAC
AGATGACACTGTGGTTGTGTCTTGGCTCCCACAGTACCATGACATGGGGC
TTGTGGGAAGCCTCAGTGGAGCAGTGTATTGTGGTGGGAGTGGAGTATAT
GCGTCTCCTCTCTCCTTTGTGCAGCATCCTCCCTTGTGGGTGGACCTCAT
ATCTCGCTTCCATGCCACACACCTCCAAGCTCCAAACTTTGGGTATCGCC
TCACTGCGCGAAAAACCATTGAGCGTCTTTCTCCAGATCAGCGCCAAGCT
CTCTCGCTTGCATCTGTCAGACACATGTTCAATGCCGCAGAGCCCGTCAC
TGCTGCTGCAATTGACAGCTTTAACGCCACCTTCCGATCTGCGCATCTCT
CTCCAGCTGCCACTGCTCCAGGCTATGGGCTT
back to top