mRNA_M-pyrifera_M_contig93150.21521.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93150.21521.1
Unique NamemRNA_M-pyrifera_M_contig93150.21521.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93150.21521.1 vs. uniprot
Match: A0A0D7BDN6_9AGAR (Uncharacterized protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BDN6_9AGAR)

HSP 1 Score: 59.7 bits (143), Expect = 3.100e-8
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   55 WICDSGASTHMTPSADCMTKYRECNLALRIADGSTLAIEGYGDVSVVFRSGNGPVQVLLTNVAHVPDLRYHLFSLLTLVK 294
            WI D+GA+ HMTP     T Y      +++AD S +  EG G  SVVF +  G V++ +T+V HVP LR +LFS   LV+
Sbjct:  270 WIVDTGATRHMTPHRPWFTSYARKTTPIQLADNSIIYGEGVG--SVVFTTQEG-VELEITDVLHVPQLRNNLFSPFFLVR 346
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BLAST of mRNA_M-pyrifera_M_contig93150.21521.1 vs. uniprot
Match: A0A1S3VYM9_VIGRR (uncharacterized protein LOC106779764 n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A1S3VYM9_VIGRR)

HSP 1 Score: 55.5 bits (132), Expect = 1.880e-7
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:   52 AWICDSGASTHMTPSADCMTKYRECNLA-LRIADGSTLAIEGYGDVSVVFRSGNGPVQVLLTNVAHVPDLRYHLFSLLTLVKNG 300
            +W  DSG S HMT + D M    E   + +R+AD STL +EG  +V V  ++G     V++ NV  VP+++  L S+  LV+NG
Sbjct:   56 SWYLDSGCSNHMTCNKDWMINIDETRKSKVRVADNSTLQVEGIDNVVVKRKNG---AFVIIKNVLLVPEMKCKLLSIRQLVENG 136
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BLAST of mRNA_M-pyrifera_M_contig93150.21521.1 vs. uniprot
Match: A0A1Y1LDU4_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LDU4_PHOPY)

HSP 1 Score: 53.5 bits (127), Expect = 4.570e-6
Identity = 29/79 (36.71%), Postives = 41/79 (51.90%), Query Frame = 1 
Query:   49 EAWICDSGASTHMTPSADCMTKY---RECNLALRIADGSTLAIEGYGDVSVVFRSGNGPVQVLLTNVAHVPDLRYHLFS 276
            + W+CDSGAS HMT S    + Y   +   +    A GS+L   G G+++V+           L NV +VP + YHLFS
Sbjct:  283 DGWVCDSGASDHMTGSKHYFSSYEAFKTPRIVGTAASGSSLHAIGMGNINVLMTVHGQQRTATLYNVLYVPGMSYHLFS 361
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BLAST of mRNA_M-pyrifera_M_contig93150.21521.1 vs. uniprot
Match: A0A2J7QWT7_9NEOP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QWT7_9NEOP)

HSP 1 Score: 51.6 bits (122), Expect = 2.180e-5
Identity = 29/87 (33.33%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:   46 DEAWICDSGASTHMTPSADCMTKYREC--NLALRIADGSTLAIEGYGDVSVVFRSGNGPVQVLLTNVAHVPDLRYHLFSLLTLVKNG 300
            ++ W  DSGAS+H        ++Y     +   R+ DG +L + G G V+V   +GN  + + +T V +VP+LR +LFS  T +  G
Sbjct:  313 EDDWHLDSGASSHFCHDITMFSEYTSVPNSKPCRVGDGKSLEVLGVGTVTVKSFTGNDYIDLDITGVKYVPELRMNLFSQGTALDKG 399
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BLAST of mRNA_M-pyrifera_M_contig93150.21521.1 vs. uniprot
Match: A0A1Y3MZD1_PIRSE (Uncharacterized protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MZD1_PIRSE)

HSP 1 Score: 51.2 bits (121), Expect = 2.800e-5
Identity = 26/82 (31.71%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:   55 WICDSGASTHMTPSADCMTKYRECNLALRIADGSTLAIEGYGDVSVVFRSGNGPVQVLLTNVAHVPDLRYHLFSLLTLVKNG 300
            W  D+GAS H+T + + +T ++E  + L+ A+GST   +G G     +        ++L NV +  D+  +L S + L KNG
Sbjct:  239 WTFDTGASEHITNNKEILTNFKEKEITLKCANGSTCNFDGIG----TYEGSINGYNIILDNVLYSKDVNKNLLSGIKLAKNG 316
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BLAST of mRNA_M-pyrifera_M_contig93150.21521.1 vs. uniprot
Match: A0A1S3UZY7_VIGRR (uncharacterized protein LOC106770320 n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A1S3UZY7_VIGRR)

HSP 1 Score: 50.1 bits (118), Expect = 5.820e-5
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   55 WICDSGASTHMTPSADCMTKYRECNLA-LRIADGSTLAIEGYGDVSVVFRSGNGPVQVLLTNVAHVPDLRYHLFSLLTLVKNG 300
            W  DSG S HMT + + +    E   + +R+AD STL +EG G V V  ++G       L NV  VP+++ +L S+  L + G
Sbjct:   95 WYVDSGCSNHMTYNRNWLMNLDESKKSKVRVADNSTLKVEGSGTVKVKRKNGQ---HATLENVLFVPEMKCNLLSVGQLTEKG 174
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93150.21521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A0D7BDN6_9AGAR3.100e-843.75Uncharacterized protein n=1 Tax=Cylindrobasidium t... [more]
A0A1S3VYM9_VIGRR1.880e-739.29uncharacterized protein LOC106779764 n=1 Tax=Vigna... [more]
A0A1Y1LDU4_PHOPY4.570e-636.71Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]
A0A2J7QWT7_9NEOP2.180e-533.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Y3MZD1_PIRSE2.800e-531.71Uncharacterized protein n=1 Tax=Piromyces sp. (str... [more]
A0A1S3UZY7_VIGRR5.820e-536.14uncharacterized protein LOC106770320 n=1 Tax=Vigna... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93150contigM-pyrifera_M_contig93150:172..471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score64.3
Seed ortholog evalue3.7e-08
Seed eggNOG ortholog7029.ACYPI089092-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.9900882-CDS-M-pyrifera_M_contig93150:171..4711622816843.9900882-CDS-M-pyrifera_M_contig93150:171..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93150 172..471 +
1692278211.6153035-CDS-M-pyrifera_M_contig93150:171..4711692278211.6153035-CDS-M-pyrifera_M_contig93150:171..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93150 172..471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93150.21521.1prot_M-pyrifera_M_contig93150.21521.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93150 172..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93150.21521.1

>prot_M-pyrifera_M_contig93150.21521.1 ID=prot_M-pyrifera_M_contig93150.21521.1|Name=mRNA_M-pyrifera_M_contig93150.21521.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
GRDGSGEEESAWQVGDEAWICDSGASTHMTPSADCMTKYRECNLALRIAD
GSTLAIEGYGDVSVVFRSGNGPVQVLLTNVAHVPDLRYHLFSLLTLVKNG
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mRNA from alignment at M-pyrifera_M_contig93150:172..471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93150.21521.1 ID=mRNA_M-pyrifera_M_contig93150.21521.1|Name=mRNA_M-pyrifera_M_contig93150.21521.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig93150:172..471+ (Macrocystis pyrifera P11B4 male)
GGGAGAGATGGTTCGGGGGAAGAGGAGTCTGCTTGGCAGGTAGGAGACGA
GGCTTGGATATGTGATAGTGGTGCGTCTACTCACATGACGCCCTCCGCTG
ACTGCATGACCAAATATAGAGAATGCAACTTGGCTCTCCGAATCGCTGAC
GGATCCACCCTAGCGATCGAAGGTTACGGTGACGTGAGTGTTGTCTTTCG
GTCCGGAAACGGTCCCGTGCAAGTACTGCTTACGAACGTTGCGCACGTGC
CTGATCTCCGCTACCACTTATTTTCCCTCCTCACTCTGGTCAAAAACGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93150:172..471+

>mRNA_M-pyrifera_M_contig93150.21521.1 ID=mRNA_M-pyrifera_M_contig93150.21521.1|Name=mRNA_M-pyrifera_M_contig93150.21521.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig93150:172..471+ (Macrocystis pyrifera P11B4 male)
GGGAGAGATGGTTCGGGGGAAGAGGAGTCTGCTTGGCAGGTAGGAGACGA
GGCTTGGATATGTGATAGTGGTGCGTCTACTCACATGACGCCCTCCGCTG
ACTGCATGACCAAATATAGAGAATGCAACTTGGCTCTCCGAATCGCTGAC
GGATCCACCCTAGCGATCGAAGGTTACGGTGACGTGAGTGTTGTCTTTCG
GTCCGGAAACGGTCCCGTGCAAGTACTGCTTACGAACGTTGCGCACGTGC
CTGATCTCCGCTACCACTTATTTTCCCTCCTCACTCTGGTCAAAAACGGC
GGGAGAGATGGTTCGGGGGAAGAGGAGTCTGCTTGGCAGGTAGGAGACGA
GGCTTGGATATGTGATAGTGGTGCGTCTACTCACATGACGCCCTCCGCTG
ACTGCATGACCAAATATAGAGAATGCAACTTGGCTCTCCGAATCGCTGAC
GGATCCACCCTAGCGATCGAAGGTTACGGTGACGTGAGTGTTGTCTTTCG
GTCCGGAAACGGTCCCGTGCAAGTACTGCTTACGAACGTTGCGCACGTGC
CTGATCTCCGCTACCACTTATTTTCCCTCCTCACTCTGGTCAAAAACGGC
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