mRNA_M-pyrifera_M_contig93149.21520.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93149.21520.1
Unique NamemRNA_M-pyrifera_M_contig93149.21520.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93149.21520.1 vs. uniprot
Match: C3XQV9_BRAFL (VWFA domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XQV9_BRAFL)

HSP 1 Score: 106 bits (265), Expect = 2.610e-26
Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    1 CRGAVDMVFVLDGSGSVLEPNWQKELLLASNVTEAFNIGKGQGDSRIGVVPYSSGSPSASLVIKLDRYFSANRLKEAIQSIEYPTGGTYTGKALDYTTTTLFTPSGGARDTTKGVPRVIVVVTDGQSTDSVDAPSKRARDAGI 429
            CR  VD+VF+LDGSGS+ + N+Q      +  T  F IG    ++++ VV Y S SP+      LDRY +   L  AI  I Y  GGT TG+A+DY  TT  T S GAR   +GVP+VI+VVTDGQS D V  P++RA+ +GI
Sbjct:   42 CRMPVDLVFLLDGSGSIGDSNFQVTKNFVATTTSDFQIGP--DNAQVSVVQYES-SPTEEF--PLDRYATLEDLLSAINLIPYRGGGTRTGRAIDYVVTTTLTVSRGAR---QGVPKVIIVVTDGQSGDDVREPARRAKQSGI 176          
BLAST of mRNA_M-pyrifera_M_contig93149.21520.1 vs. uniprot
Match: C3XQX7_BRAFL (VWFA domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XQX7_BRAFL)

HSP 1 Score: 98.2 bits (243), Expect = 6.790e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 CRGAVDMVFVLDGSGSVLEPNWQKELLLASNVTEAFNIGKGQGDSRIGVVPYSSGSPSASLVIKLDRYFSANRLKEAIQSIEYPTGGTYTGKALDYTTTTLFTPSGGARDTTKGVPRVIVVVTDGQSTDSVDAPSKRARDAGI 429
            CR  VD+VF+LDGSGS+ + N+Q      +  T  F IG    ++++G+V Y++        + L++Y + + L  AI +I Y  GGTYTG A+DY      T S GAR   + VP+V++VVTDGQS D V  P+ RA+ +GI
Sbjct:   40 CRMPVDLVFLLDGSGSIGDSNFQVTKNFVATTTSDFQIGP--NNAQVGIVQYANWLYEE---VSLNQYKTLDELLPAIYNISYWGGGTYTGWAIDYVVNATLTESRGAR---QDVPKVVIVVTDGQSADDVRQPALRAKQSGI 174          
BLAST of mRNA_M-pyrifera_M_contig93149.21520.1 vs. uniprot
Match: C3XS83_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XS83_BRAFL)

HSP 1 Score: 99.4 bits (246), Expect = 1.130e-22
Identity = 61/139 (43.88%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   13 VDMVFVLDGSGSVLEPNWQKELLLASNVTEAFNIGKGQGDSRIGVVPYSSGSPSASLVIKLDRYFSANRLKEAIQSIEYPTGGTYTGKALDYTTTTLFTPSGGARDTTKGVPRVIVVVTDGQSTDSVDAPSKRARDAGI 429
            VD+VF+LDGSGS+  PN++       N T  F IG     +++GVV Y            L++Y + + L  AI++I Y  GGT TGKA+D+      T S GAR    GVP+V++VVTDGQS DSV AP++RA  +GI
Sbjct:    3 VDLVFLLDGSGSITAPNFEITKSFVQNTTSDFQIGTAH--TQVGVVQYEDNPYDE---FPLNQYATLDELLTAIRNITYRGGGTQTGKAIDHVVDNSLTESHGARP---GVPKVVIVVTDGQSWDSVVAPAQRANHSGI 133          
BLAST of mRNA_M-pyrifera_M_contig93149.21520.1 vs. uniprot
Match: A0A8J9YPB0_BRALA (MUC4 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YPB0_BRALA)

HSP 1 Score: 102 bits (253), Expect = 2.240e-22
Identity = 65/143 (45.45%), Postives = 84/143 (58.74%), Query Frame = 1
Query:    1 CRGAVDMVFVLDGSGSVLEPNWQKELLLASNVTEAFNIGKGQGDSRIGVVPYSSGSPSASLVIKLDRYFSANRLKEAIQSIEYPTGGTYTGKALDYTTTTLFTPSGGARDTTKGVPRVIVVVTDGQSTDSVDAPSKRARDAGI 429
            CR  VD+VF+LDGSGS+  PN++       N T  F IG     +++GVV YSS  P+      L+RY S + L  AI +I Y  GGT TGKA+ Y      T   GAR    GVP+V++VVTDGQS D V  P++RA  +GI
Sbjct: 1279 CRMPVDLVFLLDGSGSITAPNFKITKSFVQNTTSDFQIGTAH--TQVGVVQYSS-DPTEEF--PLNRYTSLDDLLPAINNIPYRGGGTQTGKAITYVLDNSLTEWHGARP---GVPKVVIVVTDGQSDDDVTPPAQRANGSGI 1413          
BLAST of mRNA_M-pyrifera_M_contig93149.21520.1 vs. uniprot
Match: A0A8B7XH29_ACAPL (uncharacterized protein LOC110973524 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XH29_ACAPL)

HSP 1 Score: 101 bits (252), Expect = 2.480e-22
Identity = 67/141 (47.52%), Postives = 88/141 (62.41%), Query Frame = 1
Query:   13 VDMVFVLDGSGSV--LEPNWQKELLLASNVTEAFNIGKGQGDSRIGVVPYSSGSPSASLVIKLDRYFSANRLKEAIQSIEYPTGGTYTGKALDYTTTTLFTPSGGARDTTKGVPRVIVVVTDGQSTDSVDAPSKRARDAGI 429
            +D+VFVLDGSGSV  ++ N  K  +LA  + + F+IG  +  +R+GV+ YSS   S  +   L  +     LKEA+ +I Y  GGT TG+ALD  + T F P  GAR   +G PRV VVVTDGQS DSV  P++RAR  GI
Sbjct:  198 LDLVFVLDGSGSVGSVDFNTTKNFVLA--MVDFFDIGPDK--TRVGVIQYSS---SPQIEFHLKSFTDKALLKEAVINIRYKDGGTNTGEALDEMSDTSFLPENGARPPGRGFPRVAVVVTDGQSHDSVTGPAERARQKGI 331          
BLAST of mRNA_M-pyrifera_M_contig93149.21520.1 vs. uniprot
Match: A0A6P5A167_BRABE (mucin-like protein isoform X1 n=2 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5A167_BRABE)

HSP 1 Score: 100 bits (248), Expect = 9.970e-22
Identity = 64/143 (44.76%), Postives = 85/143 (59.44%), Query Frame = 1
Query:    1 CRGAVDMVFVLDGSGSVLEPNWQKELLLASNVTEAFNIGKGQGDSRIGVVPYSSGSPSASLVIKLDRYFSANRLKEAIQSIEYPTGGTYTGKALDYTTTTLFTPSGGARDTTKGVPRVIVVVTDGQSTDSVDAPSKRARDAGI 429
            CR  VD+VF+LDGSGS+  PN++       N T  F IG    ++ + VV Y S SP       L+RY + + L  AI++I Y +GGT TG A+DY   +  T   GAR    GVP+V++VVTDG S DSV APS+RA  + I
Sbjct:  180 CRMPVDLVFLLDGSGSITAPNFEITKNFVQNTTSDFQIGP--ANTLVAVVQYQS-SPHDEF--PLNRYTTLDELLPAIRNISYRSGGTQTGLAIDYVLDSSLTEYNGARP---GVPKVVIVVTDGHSGDSVVAPSQRAHQSEI 314          
BLAST of mRNA_M-pyrifera_M_contig93149.21520.1 vs. uniprot
Match: UPI0015FF977A (mucin-like protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FF977A)

HSP 1 Score: 99.4 bits (246), Expect = 1.910e-21
Identity = 61/139 (43.88%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   13 VDMVFVLDGSGSVLEPNWQKELLLASNVTEAFNIGKGQGDSRIGVVPYSSGSPSASLVIKLDRYFSANRLKEAIQSIEYPTGGTYTGKALDYTTTTLFTPSGGARDTTKGVPRVIVVVTDGQSTDSVDAPSKRARDAGI 429
            VD+VF+LDGSGS+  PN++       N T  F IG     +++GVV Y            L++Y + + L  AI++I Y  GGT TGKA+D+      T S GAR    GVP+V++VVTDGQS DSV AP++RA  +GI
Sbjct:    3 VDLVFLLDGSGSITAPNFEITKSFVQNTTSDFQIGTAH--TQVGVVQYEDNPYDE---FPLNQYATLDELLTAIRNITYRGGGTQTGKAIDHVVDNSLTESHGARP---GVPKVVIVVTDGQSWDSVVAPAQRANHSGI 133          
BLAST of mRNA_M-pyrifera_M_contig93149.21520.1 vs. uniprot
Match: A0A6P4YS65_BRABE (collagen alpha-3(VI) chain-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YS65_BRABE)

HSP 1 Score: 99.4 bits (246), Expect = 1.940e-21
Identity = 61/143 (42.66%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 CRGAVDMVFVLDGSGSVLEPNWQKELLLASNVTEAFNIGKGQGDSRIGVVPYSSGSPSASLVIKLDRYFSANRLKEAIQSIEYPTGGTYTGKALDYTTTTLFTPSGGARDTTKGVPRVIVVVTDGQSTDSVDAPSKRARDAGI 429
            C   +D+VFVLDG+GSV E N+++   +   +   FNIG GQ  +R+G++ Y++      + I LD Y   + L EAI +I Y  G T TG+ALDYT    F+P+ GAR    GV +V +V+TDG S D V  P++R R A I
Sbjct: 1618 CSAVLDLVFVLDGTGSVGEENFERIKAIVQKLVTNFNIGAGQ--TRVGIIQYAN---IQQMEISLDAYSDVDSLVEAIGNIGYIGGNTLTGQALDYTWKFGFSPNNGART---GVVQVAIVITDGVSDDEVSNPAQRMRKAQI 1752          
BLAST of mRNA_M-pyrifera_M_contig93149.21520.1 vs. uniprot
Match: UPI001F03FBDA (uncharacterized protein LOC124443411 n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03FBDA)

HSP 1 Score: 98.2 bits (243), Expect = 4.540e-21
Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    1 CRGAVDMVFVLDGSGSVLEPNWQKELLLASNVTEAFNIGK--GQGDSRIGVVPYSSGSPSASLVIKLDRYFSANRLKEAIQSIEYPTGGTYTGKALDYTTTTLFTPSGGARDTTKGVPRVIVVVTDGQSTDSVDAPSKRARDAGI 429
            C  +VD+VF+LD SGSV   N+QK L    N+ ++F   +  G+G SR G+  +S+  P       L+ Y + +  + AI+S++Y +G TY G AL    T  FT + G R   KGVPR+++++TDG++TDSV  P+K  RD  I
Sbjct:  255 CNSSVDLVFLLDESGSVSRGNFQKSLDFVLNIIKSFPDERLSGEGGSRFGLSTFST--PPYISHFHLNDYTTQSEYRTAIESVKYNSGWTYLGDALQNILTDQFTENRGLRPAVKGVPRILIILTDGKATDSVLTPAKNIRDNEI 397          
BLAST of mRNA_M-pyrifera_M_contig93149.21520.1 vs. uniprot
Match: A0A6P5AI24_BRABE (uncharacterized protein LOC109486543 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AI24_BRABE)

HSP 1 Score: 97.8 bits (242), Expect = 5.010e-21
Identity = 62/139 (44.60%), Postives = 84/139 (60.43%), Query Frame = 1
Query:   13 VDMVFVLDGSGSVLEPNWQKELLLASNVTEAFNIGKGQGDSRIGVVPYSSGSPSASLVIKLDRYFSANRLKEAIQSIEYPTGGTYTGKALDYTTTTLFTPSGGARDTTKGVPRVIVVVTDGQSTDSVDAPSKRARDAGI 429
            +DMVFVLDGSGSV   N++      S+V +AF IG  Q  +RIGVV YS+   +      L  Y +   ++ AI +I Y  G TYTG AL Y T   F+   GAR   + +P+V +VVTDG++TD+V  P+ RA +AGI
Sbjct:  176 MDMVFVLDGSGSVGADNFETVKDFVSSVVDAFEIG--QSRTRIGVVQYSNEIQNE---FNLTEYGNKPDVQSAIGNITYLQGSTYTGAALRYMTDVSFSLEAGARPAYQAIPKVGIVVTDGEATDNVRGPADRAHEAGI 309          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93149.21520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C3XQV9_BRAFL2.610e-2646.85VWFA domain-containing protein (Fragment) n=1 Tax=... [more]
C3XQX7_BRAFL6.790e-2341.26VWFA domain-containing protein (Fragment) n=1 Tax=... [more]
C3XS83_BRAFL1.130e-2243.88Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
A0A8J9YPB0_BRALA2.240e-2245.45MUC4 protein n=1 Tax=Branchiostoma lanceolatum Tax... [more]
A0A8B7XH29_ACAPL2.480e-2247.52uncharacterized protein LOC110973524 n=1 Tax=Acant... [more]
A0A6P5A167_BRABE9.970e-2244.76mucin-like protein isoform X1 n=2 Tax=Branchiostom... [more]
UPI0015FF977A1.910e-2143.88mucin-like protein n=1 Tax=Branchiostoma floridae ... [more]
A0A6P4YS65_BRABE1.940e-2142.66collagen alpha-3(VI) chain-like n=1 Tax=Branchiost... [more]
UPI001F03FBDA4.540e-2140.00uncharacterized protein LOC124443411 n=1 Tax=Xenia... [more]
A0A6P5AI24_BRABE5.010e-2144.60uncharacterized protein LOC109486543 n=1 Tax=Branc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93149contigM-pyrifera_M_contig93149:329..757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score100.5
Seed ortholog evalue6.3e-19
Seed eggNOG ortholog7739.XP_002613545.1
Preferred nameMATN1
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0001501,GO:0002062,GO:0002063,GO:0003413,GO:0003414,GO:0003416,GO:0003417,GO:0003418,GO:0003422,GO:0003429,GO:0003433,GO:0003674,GO:0005198,GO:0005201,GO:0005575,GO:0005576,GO:0007275,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0016043,GO:0022607,GO:0030154,GO:0030198,GO:0030278,GO:0030500,GO:0031012,GO:0032501,GO:0032502,GO:0032989,GO:0035265,GO:0040007,GO:0043062,GO:0043933,GO:0044085,GO:0044421,GO:0048468,GO:0048513,GO:0048589,GO:0048705,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0051216,GO:0051239,GO:0060348,GO:0060349,GO:0060350,GO:0060351,GO:0060536,GO:0061448,GO:0065003,GO:0065007,GO:0070167,GO:0071840,GO:0090171,GO:0098868,GO:2000026
EggNOG free text desc.cartilage matrix protein
EggNOG OGs38I5U@33154,3BDV7@33208,3CW6Y@33213,486QH@7711,KOG1217@1,KOG1217@2759
COG Functional cat.T
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size411
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.9425495-UTR-M-pyrifera_M_contig93149:328..3461622816843.9425495-UTR-M-pyrifera_M_contig93149:328..346Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93149 329..346 +
1692278211.5912879-UTR-M-pyrifera_M_contig93149:328..3461692278211.5912879-UTR-M-pyrifera_M_contig93149:328..346Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93149 329..346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.9545913-CDS-M-pyrifera_M_contig93149:346..7571622816843.9545913-CDS-M-pyrifera_M_contig93149:346..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93149 347..757 +
1692278211.6062834-CDS-M-pyrifera_M_contig93149:346..7571692278211.6062834-CDS-M-pyrifera_M_contig93149:346..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93149 347..757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93149.21520.1prot_M-pyrifera_M_contig93149.21520.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93149 347..757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93149.21520.1

>prot_M-pyrifera_M_contig93149.21520.1 ID=prot_M-pyrifera_M_contig93149.21520.1|Name=mRNA_M-pyrifera_M_contig93149.21520.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MVFVLDGSGSVLEPNWQKELLLASNVTEAFNIGKGQGDSRIGVVPYSSGS
PSASLVIKLDRYFSANRLKEAIQSIEYPTGGTYTGKALDYTTTTLFTPSG
GARDTTKGVPRVIVVVTDGQSTDSVDAPSKRARDAGI
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mRNA from alignment at M-pyrifera_M_contig93149:329..757+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93149.21520.1 ID=mRNA_M-pyrifera_M_contig93149.21520.1|Name=mRNA_M-pyrifera_M_contig93149.21520.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig93149:329..757+ (Macrocystis pyrifera P11B4 male)
TGCCGTGGTGCCGTGGATATGGTGTTTGTGTTGGATGGGAGTGGGTCAGT ATTGGAGCCAAATTGGCAAAAGGAACTTCTCCTAGCTTCGAACGTGACGG AGGCGTTCAATATTGGAAAAGGACAAGGAGATTCCAGAATTGGCGTAGTA CCATACTCTTCTGGATCTCCAAGTGCATCACTGGTGATTAAGCTTGATCG ATACTTTTCTGCAAATCGGCTGAAAGAAGCAATACAGTCCATTGAATATC CAACTGGCGGCACTTACACTGGAAAAGCTTTGGATTACACCACAACAACG CTTTTTACTCCAAGTGGTGGTGCGAGGGATACAACAAAAGGAGTGCCACG TGTGATTGTTGTGGTAACAGATGGACAGTCCACTGATTCGGTGGACGCAC CTTCGAAACGAGCGAGGGATGCTGGGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93149:329..757+

>mRNA_M-pyrifera_M_contig93149.21520.1 ID=mRNA_M-pyrifera_M_contig93149.21520.1|Name=mRNA_M-pyrifera_M_contig93149.21520.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig93149:329..757+ (Macrocystis pyrifera P11B4 male)
ATGGTGTTTGTGTTGGATGGGAGTGGGTCAGTATTGGAGCCAAATTGGCA
AAAGGAACTTCTCCTAGCTTCGAACGTGACGGAGGCGTTCAATATTGGAA
AAGGACAAGGAGATTCCAGAATTGGCGTAGTACCATACTCTTCTGGATCT
CCAAGTGCATCACTGGTGATTAAGCTTGATCGATACTTTTCTGCAAATCG
GCTGAAAGAAGCAATACAGTCCATTGAATATCCAACTGGCGGCACTTACA
CTGGAAAAGCTTTGGATTACACCACAACAACGCTTTTTACTCCAAGTGGT
GGTGCGAGGGATACAACAAAAGGAGTGCCACGTGTGATTGTTGTGGTAAC
AGATGGACAGTCCACTGATTCGGTGGACGCACCTTCGAAACGAGCGAGGG
ATGCTGGGATTATGGTGTTTGTGTTGGATGGGAGTGGGTCAGTATTGGAG
CCAAATTGGCAAAAGGAACTTCTCCTAGCTTCGAACGTGACGGAGGCGTT
CAATATTGGAAAAGGACAAGGAGATTCCAGAATTGGCGTAGTACCATACT
CTTCTGGATCTCCAAGTGCATCACTGGTGATTAAGCTTGATCGATACTTT
TCTGCAAATCGGCTGAAAGAAGCAATACAGTCCATTGAATATCCAACTGG
CGGCACTTACACTGGAAAAGCTTTGGATTACACCACAACAACGCTTTTTA
CTCCAAGTGGTGGTGCGAGGGATACAACAAAAGGAGTGCCACGTGTGATT
GTTGTGGTAACAGATGGACAGTCCACTGATTCGGTGGACGCACCTTCGAA
ACGAGCGAGGGATGCTGGGATT
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