mRNA_M-pyrifera_M_contig931.21517.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig931.21517.1
Unique NamemRNA_M-pyrifera_M_contig931.21517.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig931.21517.1 vs. uniprot
Match: D7FWF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWF2_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.880e-45
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 1
Query:    1 KIDTIRQLKEGLAGICRTIFKTLGRQQPEAVYQQALTIELKARTIDVASEVKINITYKGTVVSSRRVDLFLKLQDGSSAIIELKAVKTM-EGNQGSFVQQLQYYMAVFGVEHGFLVNFPHSLGFPAPPGGQVF 396
            KI+TI +LK+ L G+CRT+F  LGRQQ E+ YQ AL IEL+ R + V  EVKI+ITY+   +SSRRVDL L L+DGS+AI+E+KAV T+ +G   + V QLQYY+ VF + HGFL+NFPH  GFP PP G +F
Sbjct:   98 KIETIAELKQQLEGMCRTVFAALGRQQTESAYQMALKIELEDRGVAVQQEVKISITYRDIDISSRRVDLLLTLRDGSTAIVEMKAVSTLTKGTNLNAVHQLQYYLDVFDINHGFLLNFPHDAGFPPPPNGGIF 230          
BLAST of mRNA_M-pyrifera_M_contig931.21517.1 vs. uniprot
Match: G5A7T5_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A7T5_PHYSP)

HSP 1 Score: 120 bits (300), Expect = 6.730e-31
Identity = 66/129 (51.16%), Postives = 86/129 (66.67%), Query Frame = 1
Query:    4 IDTIRQLKEGLAGICRTIFKTLGRQQPEAVYQQALTIELKARTIDVASEVKINITYKGTVVSSRRVDLFLKLQDGSSAIIELKAVKTMEGNQGSFVQQLQYYMAVFGVEHGFLVNFPHSLGFPAPPGGQ 390
            I T  QLKE LA IC  +F+ LG    EA YQ+AL +EL+ R + V SEV+I + YKG  +++RRVDL+LKLQD    I+ELKAV T  G +   ++QL++Y+A F V  GFL+NFPH  GFP   G Q
Sbjct:   73 IATSSQLKEELAAICNEVFRVLGPYNLEATYQRALALELRERGVTVLSEVEIPVLYKGQRIATRRVDLYLKLQD-KPVILELKAVVT--GLKPDHLKQLKFYLAHFDVSEGFLINFPHITGFPDESGVQ 198          
BLAST of mRNA_M-pyrifera_M_contig931.21517.1 vs. uniprot
Match: A0A1W0A3A4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3A4_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.900e-28
Identity = 66/133 (49.62%), Postives = 83/133 (62.41%), Query Frame = 1
Query:    1 KIDTIRQLKEGLAGICRTIFKTLGRQQPEAVYQQALTIELKARTIDVASEVKINITYKGTVVSSRRVDLFLKLQDGSSAIIELKAVKTMEGNQ-GSFVQQLQYYMAVFGVEHGFLVNFPHSLGFPAPPGGQVF 396
            KI+  + L E L  IC  IF+ LG+Q  EA YQ AL  EL+ R + VASEV I I YKG  +++RR+DL L L+     I+ELKAV    GN   + + QLQYYM    VE G+L+NFPH  GFPAP  G V+
Sbjct:   55 KIENSKDLMENLPAICNEIFEILGQQNLEATYQSALCEELQRRGVIVASEVDIPIKYKGLQIATRRIDLLLYLE--KPVILELKAVT---GNLLPTHLMQLQYYMTHSRVEEGYLINFPHITGFPAPSNGIVY 182          
BLAST of mRNA_M-pyrifera_M_contig931.21517.1 vs. uniprot
Match: A0A329RF81_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RF81_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.090e-27
Identity = 59/124 (47.58%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 KIDTIRQLKEGLAGICRTIFKTLGRQQPEAVYQQALTIELKARTIDVASEVKINITYKGTVVSSRRVDLFLKLQDGSSAIIELKAVKTMEGNQGSFVQQLQYYMAVFGVEHGFLVNFPHSLGFP 372
            +I    QL+E L  IC  +F+ LG    EA YQQAL +ELK R + V SEV+I + YKG ++++RR+DL+LKL      I+ELKAV T  G +   ++QL+YYM    V  G+L+NFPH+ GFP
Sbjct:   48 RITRSSQLEEELPAICNEVFRVLGPYNLEATYQQALALELKDRGVTVFSEVRIPVEYKGQIIATRRMDLYLKLD--KPVILELKAVVT--GLKTDHMKQLKYYMTHSNVSDGYLINFPHTTGFP 167          
BLAST of mRNA_M-pyrifera_M_contig931.21517.1 vs. uniprot
Match: A0A836CCG6_9STRA (PD-XK nuclease superfamily-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCG6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.740e-26
Identity = 59/128 (46.09%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    4 IDTIRQLKEGLAGICRTIFKTLGRQQPEAVYQQALTIELKARTIDVASEVKINITYKGTVVSSRRVDLFLKLQDGSSAIIELKAVKTMEGNQGSFVQQLQYYMAVFGVEHGFLVNFPHSLGFPAPPGG 387
            + T   L + L  +C  IF TLG    EA YQ+AL  EL++R I V  E+ + I Y    + SRR+DL L L DGS AIIELKAV +++      ++QL+YY+A + ++ GFLVNFPH  GFPA   G
Sbjct:    4 VSTPEDLSDLLPHLCNAIFTTLGTCNLEASYQRALCFELRSRGIRVTEELPLPILYGDCEIGSRRLDLLLTLPDGSQAIIELKAVLSLDSKH---LKQLEYYLAHWSLDLGFLVNFPHEQGFPADHNG 128          
BLAST of mRNA_M-pyrifera_M_contig931.21517.1 vs. uniprot
Match: A0A425CE42_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CE42_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.390e-26
Identity = 60/124 (48.39%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 KIDTIRQLKEGLAGICRTIFKTLGRQQPEAVYQQALTIELKARTIDVASEVKINITYKGTVVSSRRVDLFLKLQDGSSAIIELKAVKTMEGNQGSFVQQLQYYMAVFGVEHGFLVNFPHSLGFP 372
            +I +  QLK+ L  +C  +F  LG    EA YQ+AL +EL+ R I V SEV+I I YKG ++++RRVDL+LKL      I+ELKAV T  G +   ++QLQ+YM  F V  G+L+NFPH  GFP
Sbjct:   75 RITSALQLKQELVLLCNEVFNVLGPFNLEATYQRALALELQDRGITVLSEVEIPIEYKGQLIATRRVDLYLKLD--KPVILELKAVVT--GLKTEHLKQLQFYMTHFKVNEGYLINFPHVTGFP 194          
BLAST of mRNA_M-pyrifera_M_contig931.21517.1 vs. uniprot
Match: A0A835YHV7_9STRA (PD-XK nuclease superfamily-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHV7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.140e-25
Identity = 59/128 (46.09%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    4 IDTIRQLKEGLAGICRTIFKTLGRQQPEAVYQQALTIELKARTIDVASEVKINITYKGTVVSSRRVDLFLKLQDGSSAIIELKAVKTMEGNQGSFVQQLQYYMAVFGVEHGFLVNFPHSLGFPAPPGG 387
            + T   L + L  +C  IF TLG    EA YQ+AL  EL++R I V  E+ + I Y    + SRR+DL L L DGS AIIELKAV +++      ++QL+YY+A + ++ GFLVNFPH  GFPA   G
Sbjct:   45 VSTPEDLSDLLPHLCNAIFTTLGTCNLEASYQRALCFELRSRGIRVTEELPLPILYGDCEIGSRRLDLLLTLPDGSQAIIELKAVLSLDSKH---LKQLEYYLAHWSLDLGFLVNFPHEQGFPADHNG 169          
BLAST of mRNA_M-pyrifera_M_contig931.21517.1 vs. uniprot
Match: A0A4R1KRX8_9FLAO (GxxExxY protein n=1 Tax=Winogradskyella wandonensis TaxID=1442586 RepID=A0A4R1KRX8_9FLAO)

HSP 1 Score: 65.5 bits (158), Expect = 4.400e-11
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 1
Query:   34 LAGICRTIFKTLGRQQPEAVYQQALTIELKARTIDVASEVKINITYKGTVVS-SRRVDLFLKLQDGSSAIIELKAVKTMEGNQGSFVQQLQYYMAVFGVEHGFLVNF 351
            + G+C  +  TLG+   EAVY +AL IELK   +    EVK  I YK T++  S   DL +        I+ELKAV+ +  N    V+Q   Y+AV G++ G ++NF
Sbjct:   13 IVGLCMEVHNTLGKGFSEAVYAEALEIELKQNGVPYKKEVKFKIKYKDTLLKKSYCADLVID----DKIILELKAVEAIHSNH---VKQTLNYLAVSGLKLGLIINF 112          
BLAST of mRNA_M-pyrifera_M_contig931.21517.1 vs. uniprot
Match: UPI0012AD334A (GxxExxY protein n=2 Tax=Ancylomarina sp. 16SWW S1-10-2 TaxID=2499681 RepID=UPI0012AD334A)

HSP 1 Score: 64.3 bits (155), Expect = 1.320e-10
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    7 DTIRQLKEGLAGICRTIFKTLGRQQPEAVYQQALTIELKARTIDVASEVKINITYKGTVVSSRRVDLFLKLQDGSSAIIELKAVKTMEGNQGSFVQQLQYYMAVFGVEHGFLVNF 351
            +T +Q    + G+C  + + LG    EAVYQ+AL IEL     D   E +I I YKG ++  +    FL   +    I+ELK VK+++GN    + Q+  YM     + G LVNF
Sbjct:    7 NTFKQECYDIVGLCMLVHRELGSGFLEAVYQEALEIELVKADKDYVRECQIQINYKGIILDKKYYADFLCHNE---IIVELKVVKSLDGNH---MAQIMNYMKATNKKVGLLVNF 115          
BLAST of mRNA_M-pyrifera_M_contig931.21517.1 vs. uniprot
Match: D7G8U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U1_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.590e-10
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    4 IDTIRQLKEGLAGICRTIFKTLGRQQPEAVYQQALTIELKARTIDVASEVKI-NITYKGTVVSSRRVDLFLKLQDGSSAIIELK 252
            I  + + K+GL  +C  ++++LG+ Q E  YQ AL +EL  R + V +E +I +  Y+G  V  RR+DL L++ DGS A+IE+K
Sbjct:  259 IGNVAEHKQGLGRLCGAVWRSLGQHQTERAYQLALCMELVRRGVTVHNEAEIPSAQYRGEYVGWRRLDLLLRVADGSMAVIEVK 342          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig931.21517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWF2_ECTSI1.880e-4557.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
G5A7T5_PHYSP6.730e-3151.16Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A1W0A3A4_9STRA1.900e-2849.62Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A329RF81_9STRA1.090e-2747.58Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A836CCG6_9STRA1.740e-2646.09PD-XK nuclease superfamily-domain-containing prote... [more]
A0A425CE42_9STRA2.390e-2648.39Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A835YHV7_9STRA2.140e-2546.09PD-XK nuclease superfamily-domain-containing prote... [more]
A0A4R1KRX8_9FLAO4.400e-1138.32GxxExxY protein n=1 Tax=Winogradskyella wandonensi... [more]
UPI0012AD334A1.320e-1035.65GxxExxY protein n=2 Tax=Ancylomarina sp. 16SWW S1-... [more]
D7G8U1_ECTSI2.590e-1040.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig931contigM-pyrifera_M_contig931:10335..10730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue2.7e-35
Seed eggNOG ortholog2880.D7FWF2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PD-(D/E)XK nuclease superfamily
EggNOG OGs2ET7H@1,2SVKZ@2759
Ec32 ortholog descriptionGxxExxY protein
Ec32 orthologEc-07_007280.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.7595959-CDS-M-pyrifera_M_contig931:10334..107301622816843.7595959-CDS-M-pyrifera_M_contig931:10334..10730Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig931 10335..10730 -
1692278211.4924762-CDS-M-pyrifera_M_contig931:10334..107301692278211.4924762-CDS-M-pyrifera_M_contig931:10334..10730Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig931 10335..10730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig931.21517.1prot_M-pyrifera_M_contig931.21517.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig931 10335..10730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig931.21517.1

>prot_M-pyrifera_M_contig931.21517.1 ID=prot_M-pyrifera_M_contig931.21517.1|Name=mRNA_M-pyrifera_M_contig931.21517.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
KIDTIRQLKEGLAGICRTIFKTLGRQQPEAVYQQALTIELKARTIDVASE
VKINITYKGTVVSSRRVDLFLKLQDGSSAIIELKAVKTMEGNQGSFVQQL
QYYMAVFGVEHGFLVNFPHSLGFPAPPGGQVF
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mRNA from alignment at M-pyrifera_M_contig931:10335..10730-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig931.21517.1 ID=mRNA_M-pyrifera_M_contig931.21517.1|Name=mRNA_M-pyrifera_M_contig931.21517.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig931:10335..10730- (Macrocystis pyrifera P11B4 male)
AAGATCGACACTATACGCCAACTAAAGGAAGGCTTGGCGGGGATATGTAG AACGATCTTTAAAACACTTGGGCGGCAACAGCCGGAGGCGGTCTACCAGC AAGCCCTCACAATTGAGCTGAAAGCCAGGACTATCGATGTGGCATCCGAG GTGAAAATAAACATCACGTACAAGGGTACCGTGGTGTCATCAAGGAGGGT TGACCTCTTCTTGAAGCTTCAGGACGGGTCGAGCGCGATTATCGAACTCA AGGCCGTCAAGACGATGGAGGGTAATCAAGGTAGTTTCGTTCAACAGCTT CAGTACTACATGGCCGTCTTCGGCGTTGAGCACGGCTTTCTCGTTAACTT CCCGCACAGCCTTGGATTCCCCGCGCCCCCGGGTGGCCAGGTGTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig931:10335..10730-

>mRNA_M-pyrifera_M_contig931.21517.1 ID=mRNA_M-pyrifera_M_contig931.21517.1|Name=mRNA_M-pyrifera_M_contig931.21517.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig931:10335..10730- (Macrocystis pyrifera P11B4 male)
AAGATCGACACTATACGCCAACTAAAGGAAGGCTTGGCGGGGATATGTAG
AACGATCTTTAAAACACTTGGGCGGCAACAGCCGGAGGCGGTCTACCAGC
AAGCCCTCACAATTGAGCTGAAAGCCAGGACTATCGATGTGGCATCCGAG
GTGAAAATAAACATCACGTACAAGGGTACCGTGGTGTCATCAAGGAGGGT
TGACCTCTTCTTGAAGCTTCAGGACGGGTCGAGCGCGATTATCGAACTCA
AGGCCGTCAAGACGATGGAGGGTAATCAAGGTAGTTTCGTTCAACAGCTT
CAGTACTACATGGCCGTCTTCGGCGTTGAGCACGGCTTTCTCGTTAACTT
CCCGCACAGCCTTGGATTCCCCGCGCCCCCGGGTGGCCAGGTGTTCAAGA
TCGACACTATACGCCAACTAAAGGAAGGCTTGGCGGGGATATGTAGAACG
ATCTTTAAAACACTTGGGCGGCAACAGCCGGAGGCGGTCTACCAGCAAGC
CCTCACAATTGAGCTGAAAGCCAGGACTATCGATGTGGCATCCGAGGTGA
AAATAAACATCACGTACAAGGGTACCGTGGTGTCATCAAGGAGGGTTGAC
CTCTTCTTGAAGCTTCAGGACGGGTCGAGCGCGATTATCGAACTCAAGGC
CGTCAAGACGATGGAGGGTAATCAAGGTAGTTTCGTTCAACAGCTTCAGT
ACTACATGGCCGTCTTCGGCGTTGAGCACGGCTTTCTCGTTAACTTCCCG
CACAGCCTTGGATTCCCCGCGCCCCCGGGTGGCCAGGTGTTC
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