mRNA_M-pyrifera_M_contig93092.21514.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93092.21514.1
Unique NamemRNA_M-pyrifera_M_contig93092.21514.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93092.21514.1 vs. uniprot
Match: A0A350KA19_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A350KA19_9PLAN)

HSP 1 Score: 391 bits (1005), Expect = 4.810e-133
Identity = 193/252 (76.59%), Postives = 215/252 (85.32%), Query Frame = 1
Query:    1 LAIRRYQDILPDADISRFDYPRNKLLVWLRNDAVPAAEEYCLRLRFKEYANWPLVALMPGADTPERQLIESLERGITECAKTLSQLTKDELVGKQLEDQNPSRLIISEESVGITAGGTNCLDRKTEKSNDLEFILSQVEYLAQTSDLSLVNSSDYFAPEQVFSEDADGKKVQRGELIIALNHELDPVGNFIVRCLLERIRQWYEILSKTRAMTIKAIKATGRPYRQLIDRLENEWKQLETDWLECQHLLKSG 756
            LA+RRYQDILPDADI RF++PR KLL WLRNDA PA EEY  RLRF+EYANWPL+AL PGADTPERQLI+SLE+GI +CAKTLSQL K+ELVGK LEDQNPSR  +SEE+V ITAGGT  L R   KSNDLE +LSQVEYL+Q SDL LVNSSDYF P Q FS+D DGKKVQRG LIIA N+ELDPVGN+IVRCLLER RQWYE+L K R M  KAIKATGRPY+QL+D+LENEWK+L+ DW ECQHLLKSG
Sbjct:    6 LAVRRYQDILPDADIPRFNFPREKLLAWLRNDACPAVEEYSQRLRFQEYANWPLIALNPGADTPERQLIDSLEQGILKCAKTLSQLRKEELVGKNLEDQNPSRDYVSEETVEITAGGTTSLKRIIGKSNDLEIVLSQVEYLSQISDLPLVNSSDYFGPVQEFSKDVDGKKVQRGGLIIAFNYELDPVGNYIVRCLLERTRQWYELLFKARGMIKKAIKATGRPYQQLVDQLENEWKKLDADWSECQHLLKSG 257          
BLAST of mRNA_M-pyrifera_M_contig93092.21514.1 vs. uniprot
Match: A0A517VKN9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VKN9_9PLAN)

HSP 1 Score: 375 bits (963), Expect = 1.120e-126
Identity = 182/252 (72.22%), Postives = 212/252 (84.13%), Query Frame = 1
Query:    1 LAIRRYQDILPDADISRFDYPRNKLLVWLRNDAVPAAEEYCLRLRFKEYANWPLVALMPGADTPERQLIESLERGITECAKTLSQLTKDELVGKQLEDQNPSRLIISEESVGITAGGTNCLDRKTEKSNDLEFILSQVEYLAQTSDLSLVNSSDYFAPEQVFSEDADGKKVQRGELIIALNHELDPVGNFIVRCLLERIRQWYEILSKTRAMTIKAIKATGRPYRQLIDRLENEWKQLETDWLECQHLLKSG 756
            LA+RRYQDI+P+ADI R ++PR KLL WLRN+A PA EEY  RLRF+EYANWPL+AL PGADTPERQLI+SLE+GI +CAKTLSQLTK+EL+GK LEDQN  +  + EE+V ITA  T C+ R   KSN+LE +LSQVEYL+  SDLSLVNSSDYFAP Q   +D DGKKVQRGELIIA N+ELDPVGN+++RCLLER RQWYE+LSKTR M  KAI+ATGRPY+QL+D+LENEWK LE DW ECQHLLKSG
Sbjct:    6 LAVRRYQDIVPEADIPRINFPREKLLAWLRNEACPAVEEYSQRLRFQEYANWPLIALNPGADTPERQLIDSLEQGILKCAKTLSQLTKEELIGKNLEDQNQPQSYVREETVEITAERTTCVKRIIGKSNELEIVLSQVEYLSLISDLSLVNSSDYFAPVQEIPKDVDGKKVQRGELIIAFNYELDPVGNYMIRCLLERARQWYELLSKTRCMIKKAIEATGRPYQQLVDQLENEWKNLEADWSECQHLLKSG 257          
BLAST of mRNA_M-pyrifera_M_contig93092.21514.1 vs. uniprot
Match: A0A518IGE4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IGE4_9PLAN)

HSP 1 Score: 348 bits (892), Expect = 6.390e-116
Identity = 174/252 (69.05%), Postives = 202/252 (80.16%), Query Frame = 1
Query:    1 LAIRRYQDILPDADISRFDYPRNKLLVWLRNDAVPAAEEYCLRLRFKEYANWPLVALMPGADTPERQLIESLERGITECAKTLSQLTKDELVGKQLEDQNPSRLIISEESVGITAGGTNCLDRKTEKSNDLEFILSQVEYLAQTSDLSLVNSSDYFAPEQVFSEDADGKKVQRGELIIALNHELDPVGNFIVRCLLERIRQWYEILSKTRAMTIKAIKATGRPYRQLIDRLENEWKQLETDWLECQHLLKSG 756
            LA RR    LP AD   ++YPR KL   +RND  PA EEY  RLRF+EYANWP + LM GADTPER+LIESLE+GI  CAK+LSQLT+ +LV K+LE+QNP RL + E ++ ITA  T  LD+K    N+LE ILSQV++LAQ +DLSLVNSSDYF P Q FSEDADGK+VQ G LIIA NHELDPVGNFIVRC LER RQWYEI+SK RA+TIKA +ATGRPYRQL+D+LENEWK+LETDWLEC+HLLKSG
Sbjct:    6 LAERRLDSNLPRADKPSYEYPRAKLQACIRNDVCPALEEYSQRLRFQEYANWPFITLMSGADTPERRLIESLEQGILRCAKSLSQLTEKKLVRKKLEEQNPPRLTVMEGTIEITAEDTTYLDKKNGNFNELEMILSQVDHLAQNTDLSLVNSSDYFDPVQEFSEDADGKRVQHGGLIIAFNHELDPVGNFIVRCFLERARQWYEIVSKLRAITIKATRATGRPYRQLVDQLENEWKKLETDWLECKHLLKSG 257          
BLAST of mRNA_M-pyrifera_M_contig93092.21514.1 vs. uniprot
Match: A0A6I6AGG5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AGG5_9PLAN)

HSP 1 Score: 257 bits (656), Expect = 7.500e-84
Identity = 129/170 (75.88%), Postives = 143/170 (84.12%), Query Frame = 1
Query:    1 LAIRRYQDILPDADISRFDYPRNKLLVWLRNDAVPAAEEYCLRLRFKEYANWPLVALMPGADTPERQLIESLERGITECAKTLSQLTKDELVGKQLEDQNPSRLIISEESVGITAGGTNCLDRKTEKSNDLEFILSQVEYLAQTSDLSLVNSSDYFAPEQVFSEDADGKK 510
            LA+RRYQDILPDADI RF++PR KLL WLRNDA PA EEY  RLRF+EYANWPL+AL PGADTPERQLI+SLE+GI +CAKTLSQL K+ELVGK LEDQNPSR  +SEE+V ITAGGT  L R   KSNDLE +LSQVEYL+Q SDL LVNSSDYF P Q FS+D DGKK
Sbjct:    6 LAVRRYQDILPDADIPRFNFPREKLLAWLRNDACPAVEEYSQRLRFQEYANWPLIALNPGADTPERQLIDSLEQGILKCAKTLSQLRKEELVGKNLEDQNPSRDYVSEETVEITAGGTTSLKRIIGKSNDLEIVLSQVEYLSQISDLPLVNSSDYFGPVQEFSKDVDGKK 175          
BLAST of mRNA_M-pyrifera_M_contig93092.21514.1 vs. uniprot
Match: A0A356AET8_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356AET8_9PLAN)

HSP 1 Score: 103 bits (256), Expect = 1.050e-21
Identity = 75/250 (30.00%), Postives = 119/250 (47.60%), Query Frame = 1
Query:    4 AIRRYQDILPDADISRFDYPRN-KLLVWLRNDAVPAAEEYCLRLRFKEYANWPLVALMPGADTPERQLIESLERGITECAKTLSQLTKDELVGKQLEDQNPSRLIISEESVGITAGGTNCLDRKTEKSNDLEFILSQVEYLAQTSDLSLVNSSDYFAPEQVFSEDADGKKVQRGELIIALNHELDPVGNFIVRCLLERIRQWYEILSKTRAMTIKAIKATGRPYRQLIDRLENEWKQLETDWLECQHLLK 750
            AIR+YQ+  P    S FD   N +L VW   D  P  E+Y  R RF+ YA+WP+  L  GA T  R LI+ +++ + +CA+++ ++ +   V   L  ++P     +  +              T   N +E     ++Y A      LVN  DYF  +   S    G  +  G+ I++LN  L P+GNFIVR +L RIR   ++   ++ + +   K       QL  ++E+  +Q E  + E Q  LK
Sbjct:    7 AIRQYQETSPIR--SGFDEDSNSRLAVWYEEDLAPVLEDYSRRPRFRSYASWPITELQAGAKTELRGLIDLVDQYLVDCAQSVLEIFQVPSVYDALCSEHPPSEHFASGTWSSEDDSETVNKEDTLSCNPIEDHRKYLKYFASRPWEDLVNIQDYFGTQPKVSFVEIGIAICLGDTIVSLNPRLLPIGNFIVRSMLNRIRPSRKLFLGSKVLLVSIEKKRDL---QLWKKVEDAHRQYEIKFAELQQALK 251          
BLAST of mRNA_M-pyrifera_M_contig93092.21514.1 vs. uniprot
Match: A0A2E9VSB6_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E9VSB6_9PLAN)

HSP 1 Score: 100 bits (250), Expect = 7.020e-21
Identity = 72/250 (28.80%), Postives = 120/250 (48.00%), Query Frame = 1
Query:    4 AIRRYQDILPDADISRFDYPRN-KLLVWLRNDAVPAAEEYCLRLRFKEYANWPLVALMPGADTPERQLIESLERGITECAKTLSQLTKDELVGKQLEDQNPSRLIISEESVGITAGGTNCLDRKTEKSNDLEFILSQVEYLAQTSDLSLVNSSDYFAPEQVFSEDADGKKVQRGELIIALNHELDPVGNFIVRCLLERIRQWYEILSKTRAMTIKAIKATGRPYRQLIDRLENEWKQLETDWLECQHLLK 750
            AIR+YQ+  P    S FD   N +L VW   D  P  E+Y  R RF+ YA+WP+  L  GA T  R LI+ +++ + +CA+++ ++ +   V   L  ++P    ++  +           ++ T   N +E     + Y A      LVN  DYF  +   S   +G  +   + I++LN  L P+GNFIVR +L RIR   ++   ++ + +   K       +L  ++E+  +  E  + E Q  LK
Sbjct:    7 AIRQYQETSPIR--SGFDENSNSRLTVWYEEDLAPVLEDYSRRPRFRSYASWPITELQAGAKTELRSLIDQVDQYLVDCAQSVLEIFQVPSVYDALCSEHPPTQQVASGTWSSDDDSETVNEKDTLLCNPIEDHRMYLNYFASRPWEDLVNIQDYFGTQPKVSSVENGIAICWADTIVSLNPRLLPIGNFIVRSMLNRIRPSRKLFLDSKDLLVSIEKKLEL---RLWKKVEDVHRIYEVKFAELQQALK 251          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93092.21514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A350KA19_9PLAN4.810e-13376.59Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A517VKN9_9PLAN1.120e-12672.22Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A518IGE4_9PLAN6.390e-11669.05Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A6I6AGG5_9PLAN7.500e-8475.88Uncharacterized protein n=1 Tax=Gimesia benthica T... [more]
A0A356AET8_9PLAN1.050e-2130.00Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2E9VSB6_9PLAN7.020e-2128.80Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93092contigM-pyrifera_M_contig93092:3..758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size756
Cds size756
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.6529427-CDS-M-pyrifera_M_contig93092:2..7581622816843.6529427-CDS-M-pyrifera_M_contig93092:2..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93092 3..758 +
1692278211.4530265-CDS-M-pyrifera_M_contig93092:2..7581692278211.4530265-CDS-M-pyrifera_M_contig93092:2..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93092 3..758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93092.21514.1prot_M-pyrifera_M_contig93092.21514.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93092 3..758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93092.21514.1

>prot_M-pyrifera_M_contig93092.21514.1 ID=prot_M-pyrifera_M_contig93092.21514.1|Name=mRNA_M-pyrifera_M_contig93092.21514.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=252bp
LAIRRYQDILPDADISRFDYPRNKLLVWLRNDAVPAAEEYCLRLRFKEYA
NWPLVALMPGADTPERQLIESLERGITECAKTLSQLTKDELVGKQLEDQN
PSRLIISEESVGITAGGTNCLDRKTEKSNDLEFILSQVEYLAQTSDLSLV
NSSDYFAPEQVFSEDADGKKVQRGELIIALNHELDPVGNFIVRCLLERIR
QWYEILSKTRAMTIKAIKATGRPYRQLIDRLENEWKQLETDWLECQHLLK
SG
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mRNA from alignment at M-pyrifera_M_contig93092:3..758+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93092.21514.1 ID=mRNA_M-pyrifera_M_contig93092.21514.1|Name=mRNA_M-pyrifera_M_contig93092.21514.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig93092:3..758+ (Macrocystis pyrifera P11B4 male)
CTGGCAATACGAAGATACCAGGATATACTTCCGGACGCGGACATATCGAG GTTTGACTATCCCAGAAATAAACTGCTGGTCTGGCTCAGAAATGATGCCG TCCCGGCTGCTGAAGAGTACTGTCTGCGTTTAAGGTTTAAAGAATACGCT AACTGGCCGCTGGTAGCATTGATGCCCGGAGCAGACACACCGGAACGACA ATTGATCGAGTCTCTGGAACGAGGCATCACGGAATGCGCTAAAACCTTAT CACAGCTAACAAAGGATGAACTGGTTGGTAAACAACTAGAAGACCAGAAT CCTTCCCGACTGATTATTAGCGAAGAGTCTGTAGGAATCACTGCTGGAGG AACGAACTGCCTGGACAGAAAAACGGAAAAGTCTAATGATTTAGAATTTA TTTTGTCGCAAGTCGAATATCTGGCTCAAACTAGCGACTTGTCATTAGTA AACAGTTCGGATTATTTTGCCCCAGAACAGGTTTTTTCTGAAGATGCTGA TGGAAAAAAAGTCCAACGTGGAGAACTTATTATTGCGCTCAATCATGAGC TTGATCCTGTGGGAAATTTTATCGTCCGCTGTTTACTGGAACGGATCCGG CAGTGGTATGAGATTTTATCCAAAACAAGAGCTATGACTATTAAAGCCAT CAAAGCAACGGGACGCCCCTATCGACAGTTAATCGATCGGCTTGAAAACG AGTGGAAACAACTGGAAACCGACTGGTTGGAATGTCAACATCTGTTAAAA AGCGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93092:3..758+

>mRNA_M-pyrifera_M_contig93092.21514.1 ID=mRNA_M-pyrifera_M_contig93092.21514.1|Name=mRNA_M-pyrifera_M_contig93092.21514.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1512bp|location=Sequence derived from alignment at M-pyrifera_M_contig93092:3..758+ (Macrocystis pyrifera P11B4 male)
CTGGCAATACGAAGATACCAGGATATACTTCCGGACGCGGACATATCGAG
GTTTGACTATCCCAGAAATAAACTGCTGGTCTGGCTCAGAAATGATGCCG
TCCCGGCTGCTGAAGAGTACTGTCTGCGTTTAAGGTTTAAAGAATACGCT
AACTGGCCGCTGGTAGCATTGATGCCCGGAGCAGACACACCGGAACGACA
ATTGATCGAGTCTCTGGAACGAGGCATCACGGAATGCGCTAAAACCTTAT
CACAGCTAACAAAGGATGAACTGGTTGGTAAACAACTAGAAGACCAGAAT
CCTTCCCGACTGATTATTAGCGAAGAGTCTGTAGGAATCACTGCTGGAGG
AACGAACTGCCTGGACAGAAAAACGGAAAAGTCTAATGATTTAGAATTTA
TTTTGTCGCAAGTCGAATATCTGGCTCAAACTAGCGACTTGTCATTAGTA
AACAGTTCGGATTATTTTGCCCCAGAACAGGTTTTTTCTGAAGATGCTGA
TGGAAAAAAAGTCCAACGTGGAGAACTTATTATTGCGCTCAATCATGAGC
TTGATCCTGTGGGAAATTTTATCGTCCGCTGTTTACTGGAACGGATCCGG
CAGTGGTATGAGATTTTATCCAAAACAAGAGCTATGACTATTAAAGCCAT
CAAAGCAACGGGACGCCCCTATCGACAGTTAATCGATCGGCTTGAAAACG
AGTGGAAACAACTGGAAACCGACTGGTTGGAATGTCAACATCTGTTAAAA
AGCGGTCTGGCAATACGAAGATACCAGGATATACTTCCGGACGCGGACAT
ATCGAGGTTTGACTATCCCAGAAATAAACTGCTGGTCTGGCTCAGAAATG
ATGCCGTCCCGGCTGCTGAAGAGTACTGTCTGCGTTTAAGGTTTAAAGAA
TACGCTAACTGGCCGCTGGTAGCATTGATGCCCGGAGCAGACACACCGGA
ACGACAATTGATCGAGTCTCTGGAACGAGGCATCACGGAATGCGCTAAAA
CCTTATCACAGCTAACAAAGGATGAACTGGTTGGTAAACAACTAGAAGAC
CAGAATCCTTCCCGACTGATTATTAGCGAAGAGTCTGTAGGAATCACTGC
TGGAGGAACGAACTGCCTGGACAGAAAAACGGAAAAGTCTAATGATTTAG
AATTTATTTTGTCGCAAGTCGAATATCTGGCTCAAACTAGCGACTTGTCA
TTAGTAAACAGTTCGGATTATTTTGCCCCAGAACAGGTTTTTTCTGAAGA
TGCTGATGGAAAAAAAGTCCAACGTGGAGAACTTATTATTGCGCTCAATC
ATGAGCTTGATCCTGTGGGAAATTTTATCGTCCGCTGTTTACTGGAACGG
ATCCGGCAGTGGTATGAGATTTTATCCAAAACAAGAGCTATGACTATTAA
AGCCATCAAAGCAACGGGACGCCCCTATCGACAGTTAATCGATCGGCTTG
AAAACGAGTGGAAACAACTGGAAACCGACTGGTTGGAATGTCAACATCTG
TTAAAAAGCGGT
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