mRNA_M-pyrifera_M_contig93079.21510.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93079.21510.1
Unique NamemRNA_M-pyrifera_M_contig93079.21510.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93079.21510.1 vs. uniprot
Match: A0A7Y5SLS3_9BACT (Uncharacterized protein n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SLS3_9BACT)

HSP 1 Score: 186 bits (471), Expect = 6.570e-53
Identity = 100/235 (42.55%), Postives = 137/235 (58.30%), Query Frame = 1
Query:   22 NTAVILAGLYPVKSMERLNMASRELLPVDRFTFSPLLLEKVIRFRRTHDQARLYSRTAYELPQCHFGLMHTAGFFADTSFVDVVKFCCRLEAFQAAECLANDDMPGAVEAVGYLLRGAELLSHEQHVICRIEATRLRKLGLSVVEAIVHDAELDVPSVTRLHGLLAGQLDRWPHDARAWIGDRALGLHTYEAIRGGDMIWLLTDQEVQELAAELNLSVFEAAALREIDDDETFYL 726
            N A  L  L+P  ++  L   S +L P   F FSP+ LEK +RF+R +   R  +R A   P C F + +TAGF AD + VDVV+ C RLEAF+AA+CL+  D+ GAV AV  +LR A  L+ E+HV  R++A  LR   L+ ++A+V   ++ +  + RL   +   L  WP DA AW GDRA+GLH YE +R      LLT+ EV +  AE  L  F   A R +D DE +YL
Sbjct:   77 NAAAELRALFPDAAVSSLLGNSTDLYPSTEFVFSPVALEKAVRFKRRYQSQREQARKALARPTCSFKIEYTAGFTADLTLVDVVRICGRLEAFEAADCLSKPDLDGAVVAVRQMLRLASCLAAEKHVTARLQAAFLRSEALAALQAVVKHPKIAIGHLERLASAVCEDLSAWPRDADAWFGDRAVGLHAYEIVRADQAAALLTEDEVFQFTAEGILEEFPRRARRTVDADELYYL 311          
BLAST of mRNA_M-pyrifera_M_contig93079.21510.1 vs. uniprot
Match: A0A7C7V6W7_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7V6W7_9PLAN)

HSP 1 Score: 112 bits (280), Expect = 3.540e-25
Identity = 78/240 (32.50%), Postives = 115/240 (47.92%), Query Frame = 1
Query:    7 PDKNSNTAVILAGLYPVKSMERLNMASRELLPVDRFTFSPLLLEKVIRFRRTHDQARLYSRTAYELPQCHFGLMHTAGFFADTSFVDVVKFCCRLEAFQAAECLANDDMPGAVEAVGYLLRGAELLSHEQHVICRIEATRLRKLGLSVVEAIVHDAELDVPSVTRLHGLLAGQLDRWPHDARAWIGDRALGLHTYEAIRGGDMIWLLTDQEVQELAAELNLSVFEAAALREIDDDETFYL 726
            P+  +  A +L+ L   +++  L   S  L+P + F  S      V R    +   R          + HFG+   AGF AD S ++V +   RLE   A   L  DD+ GA ++ G +LR A  L+ E+H   R+ A  +R+    ++EAI+  + L    +  L  L   QL+ WP D  AWIGDRALG+  YE  R G +  +LT +E   LA    LS       + ID D+ +YL
Sbjct:   81 PEPENAAAGLLSVLDREQALSILEQ-SDSLVPKEGFQLSAERAAAVDRLLERYAPLRSRVEKMLRRTKSHFGIDFLAGFQADLSCIEVTEGAARLEMLAAVAALGRDDLQGATDSWGRILRLAACLAMEKHPTTRLRAVSIRQEAARLLEAILQHSGLRREHLDALWSLARQQLEDWPPDRLAWIGDRALGMWVYEVTRDGRLWEILTSEEKLALAEAGILSQMPQIVRQGIDGDQWYYL 319          
BLAST of mRNA_M-pyrifera_M_contig93079.21510.1 vs. uniprot
Match: A0A7C5QVH8_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C5QVH8_9PLAN)

HSP 1 Score: 99.0 bits (245), Expect = 2.800e-20
Identity = 66/192 (34.38%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  157 RTHDQARLYSRTAYELPQCHFGLMHTA--GFFADTSFVDVVKFCCRLEAFQAAECLANDDMPGAVEAVGYLLRGAELLSHEQHVICRIEATRLRKLGLSVVEAIVHDAELDVPSVTRLHGLLAGQLDRWPHDARAWIGDRALGLHTYEAIRGGDMIWLLTDQEVQELAAELNLSVFEAAALREIDDDETFYL 726
            R  +  ++ S     L Q  FGL      G  AD S VD+V+   RLE   AA  +   D+P A+ A     R  E L+   H + R  A R R   L   ++++    +   S   +  +L  QL +WP D RA +GDRA+GLHTYE +R G  + LLT +E++EL  +  L  F      ++D+DE +YL
Sbjct:  136 RAREWQKMRSEAEAILVQPDFGLHVPVDHGLLADLSHVDLVRALARLECLHAAIAIMEGDVPRALVAWETGGRWLEALASLPHAVPRAAAARGRIEWLRCAQSLLSTPGVSPESARTVAAVLDRQLRQWPPDRRALLGDRAVGLHTYELLRAGYWMSLLTRRELEELRQQGRLKPFAIHIATQLDEDELYYL 327          
BLAST of mRNA_M-pyrifera_M_contig93079.21510.1 vs. uniprot
Match: D2QZP0_PIRSD (Uncharacterized protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) TaxID=530564 RepID=D2QZP0_PIRSD)

HSP 1 Score: 94.0 bits (232), Expect = 2.100e-18
Identity = 77/247 (31.17%), Postives = 108/247 (43.72%), Query Frame = 1
Query:   10 DKNSNTAVI-LAGLYPVKSMERLNMASRELLPVDRFTFSPLLLEK----VIRFRRTHDQARLYSR---TAYELPQCHFGLMHTAGFFADTSFVDVVKFCCRLEAFQAAECLANDDMPGAVEAVGYLLRGAELLSHEQHVICRIEATRLRKLGLSVVEAIVHDAELDVPSVTRLHGLLAGQLDRWPHDARAWIGDRALGLHTYEAIRGGDMIWLLTDQEVQELAAELNLSVFEAAALREIDDDETFYL 726
            +K+  TA   L   YP  S   L     EL+P       P+ L K    + R+     + R   R   T  ELP          G   D   +D  +   ++E   +A  L+      A EA+   L+ A  L+ E  V  RI A + R   L  + A++   + D  +V RLH ++  Q+  WP D++ W GDR  GL TYE IR G    LL   E++ L  +  L     A L+ IDDDE FYL
Sbjct:   93 EKSPTTAYTRLNRCYPPLSRSILADHIAELVPRASGLLGPVELAKTQELLARYAENRKELRAILREHPTGPELPLA-------MGPLVDVECLDAAEIAIQIEVLASAAALSTHHPAAAEEAIETGLKLAAWLAGEPSVTVRIVAAQTRHAALQSLAALITQRQADSATVERLHRVIDQQIATWPLDSQLWEGDRLQGLITYEIIRSGHYFSLLPADEMKSLEEQGILKTTARAVLKNIDDDEQFYL 332          
BLAST of mRNA_M-pyrifera_M_contig93079.21510.1 vs. uniprot
Match: A0A5C5VFL9_9BACT (Uncharacterized protein n=1 Tax=Posidoniimonas corsicana TaxID=1938618 RepID=A0A5C5VFL9_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 9.460e-13
Identity = 55/180 (30.56%), Postives = 81/180 (45.00%), Query Frame = 1
Query:  187 RTAYELPQCHFGLMHTAGFFADTSFVDVVKFCCRLEAFQAAECLANDDMPGAVEAVGYLLRGAELLSHEQHVICRIEATRLRKLGLSVVEAIVHDAELDVPSVTRLHGLLAGQLDRWPHDARAWIGDRALGLHTYEAIRGGDMIWLLTDQEVQELAAELNLSVFEAAALREIDDDETFYL 726
            R A   P+C  G+    GFF     +D      RL    A   LA+ D    ++ +G   +    L+ E+ +  R+ A +LR+   + V A+             +   L GQL  WP D  A +GDRA+ LH YEAIR G +  ++T  E ++L+ +  L    A     ID DE  YL
Sbjct:  142 RQASAKPRCASGVRFERGFFDRYRLLDDATLAARLHLVAAHVALADGDRTAMLDELGLAAKWINWLAQERRLEPRLLAAQLRRQWFAAV-AVALAKPAPNRDYVAVFDQLRGQLRTWPSDRDALVGDRAITLHAYEAIRLGLLDRVITIDEKKKLSKDGRLDELRAMDQSAIDQDELTYL 320          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93079.21510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7Y5SLS3_9BACT6.570e-5342.55Uncharacterized protein n=1 Tax=Pirellulales bacte... [more]
A0A7C7V6W7_9PLAN3.540e-2532.50Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A7C5QVH8_9PLAN2.800e-2034.38Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
D2QZP0_PIRSD2.100e-1831.17Uncharacterized protein n=1 Tax=Pirellula staleyi ... [more]
A0A5C5VFL9_9BACT9.460e-1330.56Uncharacterized protein n=1 Tax=Posidoniimonas cor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93079contigM-pyrifera_M_contig93079:2..727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score132.9
Seed ortholog evalue2e-28
Seed eggNOG ortholog314230.DSM3645_05874
Hectar predicted targeting categoryother localisation
EggNOG OGs2F9QA@1,2J3A4@203682,3420G@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size726
Cds size726
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.5005333-CDS-M-pyrifera_M_contig93079:1..7271622816843.5005333-CDS-M-pyrifera_M_contig93079:1..727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93079 2..727 -
1692278211.370405-CDS-M-pyrifera_M_contig93079:1..7271692278211.370405-CDS-M-pyrifera_M_contig93079:1..727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93079 2..727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93079.21510.1prot_M-pyrifera_M_contig93079.21510.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93079 2..727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93079.21510.1

>prot_M-pyrifera_M_contig93079.21510.1 ID=prot_M-pyrifera_M_contig93079.21510.1|Name=mRNA_M-pyrifera_M_contig93079.21510.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=242bp
PPPDKNSNTAVILAGLYPVKSMERLNMASRELLPVDRFTFSPLLLEKVIR
FRRTHDQARLYSRTAYELPQCHFGLMHTAGFFADTSFVDVVKFCCRLEAF
QAAECLANDDMPGAVEAVGYLLRGAELLSHEQHVICRIEATRLRKLGLSV
VEAIVHDAELDVPSVTRLHGLLAGQLDRWPHDARAWIGDRALGLHTYEAI
RGGDMIWLLTDQEVQELAAELNLSVFEAAALREIDDDETFYL
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mRNA from alignment at M-pyrifera_M_contig93079:2..727-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93079.21510.1 ID=mRNA_M-pyrifera_M_contig93079.21510.1|Name=mRNA_M-pyrifera_M_contig93079.21510.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig93079:2..727- (Macrocystis pyrifera P11B4 male)
CCGCCGCCGGATAAGAACAGCAACACGGCCGTCATTCTCGCGGGCTTATA CCCTGTGAAATCCATGGAACGGCTCAACATGGCATCGCGAGAGTTGCTCC CGGTCGATCGCTTCACCTTCAGCCCCTTGTTGCTCGAAAAGGTGATACGC TTCCGGCGAACTCACGATCAGGCCCGACTCTACTCGCGGACCGCCTACGA ACTACCGCAATGTCACTTCGGCCTGATGCATACGGCCGGTTTCTTTGCGG ACACCTCCTTCGTTGATGTAGTGAAATTCTGTTGCCGTCTTGAAGCATTT CAGGCCGCCGAGTGCCTGGCGAACGATGATATGCCCGGGGCGGTTGAAGC AGTAGGCTATCTGCTTCGCGGCGCGGAGTTGCTCAGCCACGAGCAGCACG TGATTTGCCGAATCGAAGCCACGAGACTGCGAAAGCTGGGCTTGAGCGTG GTCGAAGCGATCGTCCACGATGCCGAACTCGATGTTCCCAGCGTAACGCG TTTACATGGACTGCTCGCCGGGCAGCTCGATCGCTGGCCGCATGACGCTC GAGCGTGGATCGGTGATCGCGCCTTGGGGTTACACACCTATGAAGCGATT CGCGGGGGCGACATGATCTGGTTGCTCACCGACCAAGAGGTCCAAGAGCT GGCCGCGGAATTGAACCTCTCCGTATTCGAAGCGGCGGCCCTGCGGGAGA TCGACGACGATGAGACGTTCTATCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93079:2..727-

>mRNA_M-pyrifera_M_contig93079.21510.1 ID=mRNA_M-pyrifera_M_contig93079.21510.1|Name=mRNA_M-pyrifera_M_contig93079.21510.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1452bp|location=Sequence derived from alignment at M-pyrifera_M_contig93079:2..727- (Macrocystis pyrifera P11B4 male)
CCGCCGCCGGATAAGAACAGCAACACGGCCGTCATTCTCGCGGGCTTATA
CCCTGTGAAATCCATGGAACGGCTCAACATGGCATCGCGAGAGTTGCTCC
CGGTCGATCGCTTCACCTTCAGCCCCTTGTTGCTCGAAAAGGTGATACGC
TTCCGGCGAACTCACGATCAGGCCCGACTCTACTCGCGGACCGCCTACGA
ACTACCGCAATGTCACTTCGGCCTGATGCATACGGCCGGTTTCTTTGCGG
ACACCTCCTTCGTTGATGTAGTGAAATTCTGTTGCCGTCTTGAAGCATTT
CAGGCCGCCGAGTGCCTGGCGAACGATGATATGCCCGGGGCGGTTGAAGC
AGTAGGCTATCTGCTTCGCGGCGCGGAGTTGCTCAGCCACGAGCAGCACG
TGATTTGCCGAATCGAAGCCACGAGACTGCGAAAGCTGGGCTTGAGCGTG
GTCGAAGCGATCGTCCACGATGCCGAACTCGATGTTCCCAGCGTAACGCG
TTTACATGGACTGCTCGCCGGGCAGCTCGATCGCTGGCCGCATGACGCTC
GAGCGTGGATCGGTGATCGCGCCTTGGGGTTACACACCTATGAAGCGATT
CGCGGGGGCGACATGATCTGGTTGCTCACCGACCAAGAGGTCCAAGAGCT
GGCCGCGGAATTGAACCTCTCCGTATTCGAAGCGGCGGCCCTGCGGGAGA
TCGACGACGATGAGACGTTCTATCTGCCGCCGCCGGATAAGAACAGCAAC
ACGGCCGTCATTCTCGCGGGCTTATACCCTGTGAAATCCATGGAACGGCT
CAACATGGCATCGCGAGAGTTGCTCCCGGTCGATCGCTTCACCTTCAGCC
CCTTGTTGCTCGAAAAGGTGATACGCTTCCGGCGAACTCACGATCAGGCC
CGACTCTACTCGCGGACCGCCTACGAACTACCGCAATGTCACTTCGGCCT
GATGCATACGGCCGGTTTCTTTGCGGACACCTCCTTCGTTGATGTAGTGA
AATTCTGTTGCCGTCTTGAAGCATTTCAGGCCGCCGAGTGCCTGGCGAAC
GATGATATGCCCGGGGCGGTTGAAGCAGTAGGCTATCTGCTTCGCGGCGC
GGAGTTGCTCAGCCACGAGCAGCACGTGATTTGCCGAATCGAAGCCACGA
GACTGCGAAAGCTGGGCTTGAGCGTGGTCGAAGCGATCGTCCACGATGCC
GAACTCGATGTTCCCAGCGTAACGCGTTTACATGGACTGCTCGCCGGGCA
GCTCGATCGCTGGCCGCATGACGCTCGAGCGTGGATCGGTGATCGCGCCT
TGGGGTTACACACCTATGAAGCGATTCGCGGGGGCGACATGATCTGGTTG
CTCACCGACCAAGAGGTCCAAGAGCTGGCCGCGGAATTGAACCTCTCCGT
ATTCGAAGCGGCGGCCCTGCGGGAGATCGACGACGATGAGACGTTCTATC
TG
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