mRNA_M-pyrifera_M_contig93062.21506.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93062.21506.1
Unique NamemRNA_M-pyrifera_M_contig93062.21506.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93062.21506.1 vs. uniprot
Match: A0A2E0RSK5_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RSK5_9ACTN)

HSP 1 Score: 229 bits (585), Expect = 9.370e-67
Identity = 119/252 (47.22%), Postives = 161/252 (63.89%), Query Frame = 1 
Query:    1 GRRNYLSRSDVAGLVAGVWSEVGPYSQPEWAQRGRPDAIGRAAFLKATDRSYLAVYETVGGARWTLESAGRGRHLGLVAEGETVSLPAAKSDARAALRARFPDVARTVDAAVGSPVLSPTSRWMPMLDGRDDRTQERVFSEWVSAVVAPGPGGTWGVWMSVDGHLAQSDQLAPTQADAQRLAEGLARGTILGHASMSPDAADRLVAEMASTVVGWDRSAMVNVAGAALTDADRQRLMSLDLTPSELVGLLAD 756
            GRRNYL+ +D+ GL   VW E GPY + EW  RG   A+G  AF++  DRSYLAVYET GGA W LE+ GRG HLGLV +GE+ SL A K D  AAL  +FPD A  +DA   + V+S    W  + +GRDDRTQ RV+ E ++A++APGPGG W  W++VDG   Q    AP    A+ +A+GLARG +L  ++++P  A+ +V ++A++   WDR  +V V G  L+D DR  L + +  P+ L  LL D
Sbjct:  279 GRRNYLAPADLRGLPLAVWVEAGPYKRAEWLARGVAGAVGVGAFMRVNDRSYLAVYETKGGAMWRLETTGRGAHLGLVGQGESDSLDAGKRDVAAALAEQFPDAAAAIDAVTTNRVVSGNFGWTALPEGRDDRTQHRVYDERITAMIAPGPGGRWQTWVAVDGEQRQGPY-APDANAARTIADGLARGALLELSAVTPSRANEMVLDLATSDASWDRDDLVAVVGHRLSDTDRHELATTE-DPARLTDLLRD 528
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BLAST of mRNA_M-pyrifera_M_contig93062.21506.1 vs. uniprot
Match: A0A524B350_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B350_9ACTN)

HSP 1 Score: 216 bits (549), Expect = 1.030e-61
Identity = 122/250 (48.80%), Postives = 155/250 (62.00%), Query Frame = 1 
Query:    1 GRRNYLSRSDVAGLVAGVWSEVGPYSQPEWAQRGRPDAIGRAAFLKATDRSYLAVYETVGGARWTLESAGRGRHLGLVAEGETVSLPAAKSDARAALRARFPDVARTVDAAVGSPVLSPTSRWMPMLDGRDDRTQERVFSEWVSAVVAPGPGGTWGVWMSVDGHLAQSDQLAPTQADAQRLAEGLARGTILGHASMSPDAADRLVAEMASTVVGWDRSAMVNVAGAALTDADRQRLMSLDLTPSELVGLL 750
            GRRNYL+ +D+  L  GVW E GPYS+ EW  RG   A G  +F +  +RSYLAVYET  GA W LE+ GRG H GLV EG   SLP  K  AR ALR RFP+ A  V+AA  S V+  +  WMPM   RD+RT +RV  + ++AVVAPGPGG W  W +VDG L Q    A  ++ A+  A+ L  G +   A+ +PD ADR VA++A++   WDRS +V V G  L+D DRQ L + +  P ELV  L
Sbjct:  262 GRRNYLAPADLRALPIGVWIEAGPYSRAEWMSRGVAGATGVGSFFRVNERSYLAVYETRQGAMWRLETTGRGAHHGLVYEGAADSLPEGKESARQALRERFPEFAHAVEAAGESRVVGASLAWMPMPGARDERTLQRVIDDRIAAVVAPGPGGRWQTWATVDGVLRQGPLSASVES-AKEAADALVAGALADLATYAPDRADRFVADLAASDC-WDRSKVVGVVGHRLSDHDRQSLSTTE-DPVELVDAL 508
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93062.21506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E0RSK5_9ACTN9.370e-6747.22Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A524B350_9ACTN1.030e-6148.80Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93062contigM-pyrifera_M_contig93062:3..758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size756
Cds size756
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.3682275-CDS-M-pyrifera_M_contig93062:2..7581622816843.3682275-CDS-M-pyrifera_M_contig93062:2..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93062 3..758 +
1692278211.3102245-CDS-M-pyrifera_M_contig93062:2..7581692278211.3102245-CDS-M-pyrifera_M_contig93062:2..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93062 3..758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93062.21506.1prot_M-pyrifera_M_contig93062.21506.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93062 3..758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93062.21506.1

>prot_M-pyrifera_M_contig93062.21506.1 ID=prot_M-pyrifera_M_contig93062.21506.1|Name=mRNA_M-pyrifera_M_contig93062.21506.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=252bp
GRRNYLSRSDVAGLVAGVWSEVGPYSQPEWAQRGRPDAIGRAAFLKATDR
SYLAVYETVGGARWTLESAGRGRHLGLVAEGETVSLPAAKSDARAALRAR
FPDVARTVDAAVGSPVLSPTSRWMPMLDGRDDRTQERVFSEWVSAVVAPG
PGGTWGVWMSVDGHLAQSDQLAPTQADAQRLAEGLARGTILGHASMSPDA
ADRLVAEMASTVVGWDRSAMVNVAGAALTDADRQRLMSLDLTPSELVGLL
AD
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mRNA from alignment at M-pyrifera_M_contig93062:3..758+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93062.21506.1 ID=mRNA_M-pyrifera_M_contig93062.21506.1|Name=mRNA_M-pyrifera_M_contig93062.21506.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig93062:3..758+ (Macrocystis pyrifera P11B4 male)
GGCCGCCGGAACTACCTGTCGCGCTCTGACGTGGCCGGTCTGGTGGCGGG
GGTTTGGAGCGAGGTCGGCCCGTACTCGCAGCCGGAATGGGCGCAGCGAG
GCCGGCCCGACGCCATCGGTCGCGCTGCGTTTCTGAAGGCGACCGACCGC
TCGTACTTGGCGGTGTACGAAACCGTAGGCGGGGCGCGTTGGACGCTGGA
GTCAGCGGGCCGGGGCCGCCACCTTGGTTTGGTAGCCGAGGGGGAAACGG
TCTCGCTGCCCGCTGCGAAGTCTGATGCTCGGGCCGCGCTGCGTGCCAGG
TTCCCTGACGTTGCGAGAACAGTTGACGCCGCGGTGGGTTCACCGGTGTT
GTCGCCCACGTCGCGGTGGATGCCGATGCTTGACGGGCGAGACGACCGAA
CCCAAGAACGAGTGTTCAGCGAATGGGTGTCGGCTGTTGTCGCGCCCGGG
CCTGGCGGCACGTGGGGTGTGTGGATGAGTGTCGATGGCCACCTCGCCCA
ATCGGACCAGCTCGCCCCGACCCAAGCCGATGCGCAGCGTCTGGCCGAGG
GACTGGCGAGAGGAACGATCCTGGGTCACGCCTCGATGTCTCCGGATGCT
GCGGATCGGCTCGTCGCTGAAATGGCGTCGACTGTGGTGGGTTGGGATCG
GTCGGCGATGGTGAATGTTGCCGGCGCGGCTCTCACGGATGCCGATCGTC
AGCGGCTGATGTCGCTGGATCTGACCCCTTCGGAACTGGTGGGTTTGCTG
GCCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93062:3..758+

>mRNA_M-pyrifera_M_contig93062.21506.1 ID=mRNA_M-pyrifera_M_contig93062.21506.1|Name=mRNA_M-pyrifera_M_contig93062.21506.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1512bp|location=Sequence derived from alignment at M-pyrifera_M_contig93062:3..758+ (Macrocystis pyrifera P11B4 male)
GGCCGCCGGAACTACCTGTCGCGCTCTGACGTGGCCGGTCTGGTGGCGGG
GGTTTGGAGCGAGGTCGGCCCGTACTCGCAGCCGGAATGGGCGCAGCGAG
GCCGGCCCGACGCCATCGGTCGCGCTGCGTTTCTGAAGGCGACCGACCGC
TCGTACTTGGCGGTGTACGAAACCGTAGGCGGGGCGCGTTGGACGCTGGA
GTCAGCGGGCCGGGGCCGCCACCTTGGTTTGGTAGCCGAGGGGGAAACGG
TCTCGCTGCCCGCTGCGAAGTCTGATGCTCGGGCCGCGCTGCGTGCCAGG
TTCCCTGACGTTGCGAGAACAGTTGACGCCGCGGTGGGTTCACCGGTGTT
GTCGCCCACGTCGCGGTGGATGCCGATGCTTGACGGGCGAGACGACCGAA
CCCAAGAACGAGTGTTCAGCGAATGGGTGTCGGCTGTTGTCGCGCCCGGG
CCTGGCGGCACGTGGGGTGTGTGGATGAGTGTCGATGGCCACCTCGCCCA
ATCGGACCAGCTCGCCCCGACCCAAGCCGATGCGCAGCGTCTGGCCGAGG
GACTGGCGAGAGGAACGATCCTGGGTCACGCCTCGATGTCTCCGGATGCT
GCGGATCGGCTCGTCGCTGAAATGGCGTCGACTGTGGTGGGTTGGGATCG
GTCGGCGATGGTGAATGTTGCCGGCGCGGCTCTCACGGATGCCGATCGTC
AGCGGCTGATGTCGCTGGATCTGACCCCTTCGGAACTGGTGGGTTTGCTG
GCCGACGGCCGCCGGAACTACCTGTCGCGCTCTGACGTGGCCGGTCTGGT
GGCGGGGGTTTGGAGCGAGGTCGGCCCGTACTCGCAGCCGGAATGGGCGC
AGCGAGGCCGGCCCGACGCCATCGGTCGCGCTGCGTTTCTGAAGGCGACC
GACCGCTCGTACTTGGCGGTGTACGAAACCGTAGGCGGGGCGCGTTGGAC
GCTGGAGTCAGCGGGCCGGGGCCGCCACCTTGGTTTGGTAGCCGAGGGGG
AAACGGTCTCGCTGCCCGCTGCGAAGTCTGATGCTCGGGCCGCGCTGCGT
GCCAGGTTCCCTGACGTTGCGAGAACAGTTGACGCCGCGGTGGGTTCACC
GGTGTTGTCGCCCACGTCGCGGTGGATGCCGATGCTTGACGGGCGAGACG
ACCGAACCCAAGAACGAGTGTTCAGCGAATGGGTGTCGGCTGTTGTCGCG
CCCGGGCCTGGCGGCACGTGGGGTGTGTGGATGAGTGTCGATGGCCACCT
CGCCCAATCGGACCAGCTCGCCCCGACCCAAGCCGATGCGCAGCGTCTGG
CCGAGGGACTGGCGAGAGGAACGATCCTGGGTCACGCCTCGATGTCTCCG
GATGCTGCGGATCGGCTCGTCGCTGAAATGGCGTCGACTGTGGTGGGTTG
GGATCGGTCGGCGATGGTGAATGTTGCCGGCGCGGCTCTCACGGATGCCG
ATCGTCAGCGGCTGATGTCGCTGGATCTGACCCCTTCGGAACTGGTGGGT
TTGCTGGCCGAC
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