mRNA_M-pyrifera_M_contig93053.21505.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93053.21505.1
Unique NamemRNA_M-pyrifera_M_contig93053.21505.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93053.21505.1 vs. uniprot
Match: A0A6H5K0G0_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.710e-25
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 RHRAIKAGQWGDGIFKAETVVRPDILLSILGLGYKVLWTDVDMVWLGNPLPFLPNAGTKHT 183
            RHRA+KAGQWGD IFK ETVVRPDILLSI+  GYKVLWTDVD+VWLGNPLP LP+     T
Sbjct: 1280 RHRAVKAGQWGDEIFKHETVVRPDILLSIMAQGYKVLWTDVDIVWLGNPLPLLPDTQKNST 1340
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BLAST of mRNA_M-pyrifera_M_contig93053.21505.1 vs. uniprot
Match: D8LU02_ECTSI (Xylosyltransferase, family GT77 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU02_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 7.270e-18
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 RHRAIKAGQWGDGIFKAETVVRPDILLSILGLGYKVLWTDVDMVWLGNPLPFLPNAGTKHT 183
            R  AI+AGQWGD IFK +TV RPDILL IL  GYK L+TDVD+ WLGN L  LPN+    T
Sbjct:  340 RAHAIQAGQWGDNIFKQQTVARPDILLPILRQGYKALYTDVDIFWLGNVLSLLPNSRVTQT 400
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BLAST of mRNA_M-pyrifera_M_contig93053.21505.1 vs. uniprot
Match: M2XP83_GALSU (Nucleotid_trans domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XP83_GALSU)

HSP 1 Score: 55.1 bits (131), Expect = 2.800e-7
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:   10 AIKAGQWGDGIFKAETVVRPDILLSILGLGYKVLWTDVDMVWLGNPLPFL 159
            ++ A  +G   FK  T ++  ++L IL LGY V+WTD D+VW  NP+P+L
Sbjct:  455 SVVAASYGSDSFKKLTKMKSRVVLRILKLGYDVIWTDCDIVWFRNPIPYL 504
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BLAST of mRNA_M-pyrifera_M_contig93053.21505.1 vs. uniprot
Match: I3SL35_MEDTR (Nucleotid_trans domain-containing protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=I3SL35_MEDTR)

HSP 1 Score: 51.6 bits (122), Expect = 3.620e-6
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   25 QWGDGIFKAETVVRPDILLSILGLGYKVLWTDVDMVWLGNPLPFL 159
            ++G   F   T  RP  LL IL LGY V++ DVDMVWLG+P P+L
Sbjct:  158 KFGSQGFFNFTARRPSHLLKILELGYSVMYNDVDMVWLGDPFPYL 202
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BLAST of mRNA_M-pyrifera_M_contig93053.21505.1 vs. uniprot
Match: A0A834XGQ7_9FABA (Glycosyltransferase n=3 Tax=Caesalpinioideae TaxID=3804 RepID=A0A834XGQ7_9FABA)

HSP 1 Score: 51.6 bits (122), Expect = 4.580e-6
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   10 AIKAGQWGDGIFKAETVVRPDILLSILGLGYKVLWTDVDMVWLGNPLPFL 159
            A  A ++G   F   T  RP  LL IL LGY V++ DVDMVWLG+P P+L
Sbjct:  152 AEAAHKFGSMGFFNFTARRPRHLLQILELGYSVMYNDVDMVWLGDPFPYL 201
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BLAST of mRNA_M-pyrifera_M_contig93053.21505.1 vs. uniprot
Match: G8A1U6_MEDTR (Glycosyltransferase n=1 Tax=Medicago truncatula TaxID=3880 RepID=G8A1U6_MEDTR)

HSP 1 Score: 51.6 bits (122), Expect = 4.580e-6
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   25 QWGDGIFKAETVVRPDILLSILGLGYKVLWTDVDMVWLGNPLPFL 159
            ++G   F   T  RP  LL IL LGY V++ DVDMVWLG+P P+L
Sbjct:  158 KFGSQGFFNFTARRPSHLLKILELGYSVMYNDVDMVWLGDPFPYL 202
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BLAST of mRNA_M-pyrifera_M_contig93053.21505.1 vs. uniprot
Match: A0A1R3H270_COCAP (Glycosyltransferase n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3H270_COCAP)

HSP 1 Score: 50.8 bits (120), Expect = 7.470e-6
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   19 AGQWGDGIFKAETVVRPDILLSILGLGYKVLWTDVDMVWLGNPLPFL 159
            A ++G   F   T  RP  LL IL LGY V++ DVDMVWLG+P P+L
Sbjct:   57 AHKFGSQGFFNFTSRRPRHLLQILELGYSVMYNDVDMVWLGDPFPYL 103
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BLAST of mRNA_M-pyrifera_M_contig93053.21505.1 vs. uniprot
Match: A0A0V0I4I2_SOLCH (Glycosyltransferase n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0I4I2_SOLCH)

HSP 1 Score: 50.8 bits (120), Expect = 8.240e-6
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   19 AGQWGDGIFKAETVVRPDILLSILGLGYKVLWTDVDMVWLGNPLPFL 159
            A ++G   F   T  RP  LL IL LGY V++ DVDMVWLG+P P+L
Sbjct:   97 AHKFGSQGFFNFTSRRPRHLLQILELGYNVMYNDVDMVWLGDPFPYL 143
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BLAST of mRNA_M-pyrifera_M_contig93053.21505.1 vs. uniprot
Match: UPI001CFA2715 (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4-like n=5 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFA2715)

HSP 1 Score: 50.8 bits (120), Expect = 8.580e-6
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   19 AGQWGDGIFKAETVVRPDILLSILGLGYKVLWTDVDMVWLGNPLPFLPNA 168
            A ++G   F   T  RP  LL IL LGY V++ DVDMVWLG+P P+L  +
Sbjct:  154 AHKFGSQGFFNFTSRRPRHLLHILELGYNVMYNDVDMVWLGDPFPYLKGS 203
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BLAST of mRNA_M-pyrifera_M_contig93053.21505.1 vs. uniprot
Match: A0A2C9VU63_MANES (Nucleotid_trans domain-containing protein n=2 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VU63_MANES)

HSP 1 Score: 50.4 bits (119), Expect = 1.000e-5
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   19 AGQWGDGIFKAETVVRPDILLSILGLGYKVLWTDVDMVWLGNPLPFL 159
            A ++G   F   T  RP  LL IL LGY V++ DVDMVWLG+P P+L
Sbjct:  153 AHKFGSQGFFNFTSRRPRHLLHILELGYNVMYNDVDMVWLGDPFPYL 199
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93053.21505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5K0G0_9PHAE2.710e-2577.05Nucleotid_trans domain-containing protein n=1 Tax=... [more]
D8LU02_ECTSI7.270e-1863.93Xylosyltransferase, family GT77 n=1 Tax=Ectocarpus... [more]
M2XP83_GALSU2.800e-744.00Nucleotid_trans domain-containing protein n=1 Tax=... [more]
I3SL35_MEDTR3.620e-653.33Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A834XGQ7_9FABA4.580e-652.00Glycosyltransferase n=3 Tax=Caesalpinioideae TaxID... [more]
G8A1U6_MEDTR4.580e-653.33Glycosyltransferase n=1 Tax=Medicago truncatula Ta... [more]
A0A1R3H270_COCAP7.470e-653.19Glycosyltransferase n=1 Tax=Corchorus capsularis T... [more]
A0A0V0I4I2_SOLCH8.240e-653.19Glycosyltransferase n=1 Tax=Solanum chacoense TaxI... [more]
UPI001CFA27158.580e-650.00UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransfera... [more]
A0A2C9VU63_MANES1.000e-553.19Nucleotid_trans domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93053contigM-pyrifera_M_contig93053:459..641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue5.5e-15
Seed eggNOG ortholog2880.D8LU02
KEGG koko:K11714,ko:K20784
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009664,GO:0009832,GO:0009856,GO:0009987,GO:0010306,GO:0010383,GO:0010393,GO:0010396,GO:0012505,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0017144,GO:0019538,GO:0022414,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034645,GO:0035250,GO:0035252,GO:0036211,GO:0042285,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0045229,GO:0045488,GO:0045489,GO:0048856,GO:0048868,GO:0051704,GO:0052325,GO:0052546,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.rhamnogalacturonan II biosynthetic process
EggNOG OGs28KPY@1,2QT5X@2759
COG Functional cat.M
CAZyGT77
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.3358316-CDS-M-pyrifera_M_contig93053:458..6411622816843.3358316-CDS-M-pyrifera_M_contig93053:458..641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93053 459..641 -
1692278211.2971268-CDS-M-pyrifera_M_contig93053:458..6411692278211.2971268-CDS-M-pyrifera_M_contig93053:458..641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93053 459..641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93053.21505.1prot_M-pyrifera_M_contig93053.21505.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93053 459..641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93053.21505.1

>prot_M-pyrifera_M_contig93053.21505.1 ID=prot_M-pyrifera_M_contig93053.21505.1|Name=mRNA_M-pyrifera_M_contig93053.21505.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
RHRAIKAGQWGDGIFKAETVVRPDILLSILGLGYKVLWTDVDMVWLGNPL
PFLPNAGTKHT
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mRNA from alignment at M-pyrifera_M_contig93053:459..641-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93053.21505.1 ID=mRNA_M-pyrifera_M_contig93053.21505.1|Name=mRNA_M-pyrifera_M_contig93053.21505.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig93053:459..641- (Macrocystis pyrifera P11B4 male)
CGGCACCGAGCGATCAAGGCCGGACAGTGGGGCGACGGCATCTTCAAGGC
AGAGACGGTGGTGCGGCCGGACATTCTCCTGTCCATCCTGGGCCTGGGCT
ACAAGGTGCTCTGGACGGACGTGGACATGGTGTGGCTGGGGAACCCCTTG
CCCTTCCTGCCCAACGCGGGGACGAAGCACACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93053:459..641-

>mRNA_M-pyrifera_M_contig93053.21505.1 ID=mRNA_M-pyrifera_M_contig93053.21505.1|Name=mRNA_M-pyrifera_M_contig93053.21505.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig93053:459..641- (Macrocystis pyrifera P11B4 male)
CGGCACCGAGCGATCAAGGCCGGACAGTGGGGCGACGGCATCTTCAAGGC
AGAGACGGTGGTGCGGCCGGACATTCTCCTGTCCATCCTGGGCCTGGGCT
ACAAGGTGCTCTGGACGGACGTGGACATGGTGTGGCTGGGGAACCCCTTG
CCCTTCCTGCCCAACGCGGGGACGAAGCACACCCGGCACCGAGCGATCAA
GGCCGGACAGTGGGGCGACGGCATCTTCAAGGCAGAGACGGTGGTGCGGC
CGGACATTCTCCTGTCCATCCTGGGCCTGGGCTACAAGGTGCTCTGGACG
GACGTGGACATGGTGTGGCTGGGGAACCCCTTGCCCTTCCTGCCCAACGC
GGGGACGAAGCACACC
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