mRNA_M-pyrifera_M_contig9304.21502.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9304.21502.1
Unique NamemRNA_M-pyrifera_M_contig9304.21502.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9304.21502.1 vs. uniprot
Match: D7FS73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS73_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 1.220e-70
Identity = 117/154 (75.97%), Postives = 138/154 (89.61%), Query Frame = 3 
Query:    3 VSIVLSAAMEGPEELDDCVQTLQKEDLLDNDLTDYVASLVTAEANRGTQSSLLKVLKMVRDRIQAELKTESRPEVRTLARALQIEDAAERKKFLQHTFTKLEELDEFVKFVEEGIEYLGNDFGFALRTNMPQDHFDKMKAVYAEAAAIRRLYLQ 464
            VS++LSAA EGP ELDDCVQTL K DLLD+DLT+YVASL+TAE  +  +S LLKVLK VRDRIQAEL+  +RPE+RTLARAL IED A+RK+FLQH F KLEELDEFVKFVEEGI++LG+DFGFA+RTNMPQ+HFDKMKA+YAEA+A+RR+YLQ
Sbjct:  120 VSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCVKSVLLKVLKTVRDRIQAELRMGARPEIRTLARALAIEDGAQRKEFLQHAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQEHFDKMKAIYAEASAMRRMYLQ 273
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BLAST of mRNA_M-pyrifera_M_contig9304.21502.1 vs. uniprot
Match: A0A6H5JNW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW5_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 1.440e-67
Identity = 115/154 (74.68%), Postives = 137/154 (88.96%), Query Frame = 3 
Query:    3 VSIVLSAAMEGPEELDDCVQTLQKEDLLDNDLTDYVASLVTAEANRGTQSSLLKVLKMVRDRIQAELKTESRPEVRTLARALQIEDAAERKKFLQHTFTKLEELDEFVKFVEEGIEYLGNDFGFALRTNMPQDHFDKMKAVYAEAAAIRRLYLQ 464
            VS++LSAA EGP ELDDCVQTL K DLLD+DLT+YVASL+TAE  +  +S LLKVLK VRDRIQAEL+  +RPE+RTLARAL I+D A+RK+FL H F KLEELDEFVKFVEEGI++LG+DFGFA+RTNMPQ+HFDKMKA+YAEA+A+RR+YLQ
Sbjct:  231 VSVILSAAAEGPMELDDCVQTLGKADLLDSDLTEYVASLITAEERKCVKSVLLKVLKTVRDRIQAELRMGARPEIRTLARALAIKDGAQRKEFLLHAFPKLEELDEFVKFVEEGIDFLGDDFGFAVRTNMPQEHFDKMKAIYAEASAMRRMYLQ 384
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BLAST of mRNA_M-pyrifera_M_contig9304.21502.1 vs. uniprot
Match: A0A835Z8U9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8U9_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.310e-29
Identity = 74/157 (47.13%), Postives = 100/157 (63.69%), Query Frame = 3 
Query:    3 VSIVLSAAMEGPEELDDCVQTLQKEDLLDNDLTDYVASLVTAEANRGTQ----SSLLKVLKMVRDRIQAELKTESRPEVRTLARALQIEDAAERKKFLQHTFTKLEELDEFVKFVEEGIEYLGNDFGFALRTNMPQDHFDKMKAVYAEAAAIRRLYL 461
            V  +L AA  GP+ELD  +  L     +D+DL +YV  LV AE  +       S LL VL+ VRDR+QAEL+T SRPE+R LA AL++  A +R  +L+  FTKLE+L+EF+ FV EG+ Y  N  G  +R+NMPQ++ DKMK +  EA  +R  YL
Sbjct:  178 VQEMLGAAAVGPQELDAAMAELSASKGIDSDLVEYVTGLVEAEEMKRMDTDGSSRLLAVLRAVRDRLQAELRTGSRPEIRILAYALRLPTALQRSDYLRSAFTKLEDLEEFLDFVTEGVGYFENG-GIDVRSNMPQENLDKMKDIQREAERMREFYL 333
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BLAST of mRNA_M-pyrifera_M_contig9304.21502.1 vs. uniprot
Match: A0A7S0H6I8_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H6I8_9CRYP)

HSP 1 Score: 70.9 bits (172), Expect = 1.930e-10
Identity = 50/161 (31.06%), Postives = 88/161 (54.66%), Query Frame = 3 
Query:   12 VLSAAMEGPEELDDCVQTLQKEDLLDNDLTDYVASLVTA----EANRGTQSSLL-KVLKMVRDRIQAELKTESRPEVRTLARALQIEDAAERKKFLQHTFTKLEELDEFVKFVEEGIEYLGNDFGFALRTNMPQDHFDKMKAVYAEAAAIRRLYLQ*SAAA 479
            ++ AA+EGPE LD+ +    +   LD+ L DY+  +V      E N  ++ S+L K+LK+++DR+ AE++T  +P V+ LA  L++ED  ER+ FL+      ++   F  F+ +G++Y+       L      +  +KMK +  E +  ++L  Q   AA
Sbjct:  229 IIGAALEGPEVLDEIMTDFCENRALDDGLVDYLDEIVAKAQEEENNSDSKESVLVKMLKVIKDRVVAEIRTRDKPYVKLLASLLRMEDHPEREAFLRGALLNPDDAIRFQGFIVDGVQYMEQHRADWLM----DERVEKMKMIAREVSMFKKLLEQRRDAA 385
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BLAST of mRNA_M-pyrifera_M_contig9304.21502.1 vs. uniprot
Match: L1IL05_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IL05_GUITC)

HSP 1 Score: 68.2 bits (165), Expect = 3.630e-10
Identity = 47/147 (31.97%), Postives = 82/147 (55.78%), Query Frame = 3 
Query:   12 VLSAAMEGPEELDDCVQTLQKEDLLDNDLTDYVASLVTA----EANRGTQSSLL-KVLKMVRDRIQAELKTESRPEVRTLARALQIEDAAERKKFLQHTFTKLEELDEFVKFVEEGIEYLGNDFGFALRTNMPQDHFDKMKAVYAEA 437
            ++ AA+EGPE LD+ +    +   LD+ L DY+  +V      E N  ++ S+L K+LK+++DR+ AE++T  +P V+ LA  L++ED  ER+ FL+      ++   F  F+ +G++Y+       L      +  +KMK +  EA
Sbjct:   43 IIGAALEGPEVLDEIMTEFCENRGLDDGLVDYLDEIVAKAQEDENNSDSKESVLVKMLKVIKDRVVAEIRTRDKPYVKLLASLLRMEDHPEREAFLRGALLNPDDATRFQGFIVDGVQYMEQHRADWLM----DERVEKMKMIAREA 185
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9304.21502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FS73_ECTSI1.220e-7075.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNW5_9PHAE1.440e-6774.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8U9_9STRA4.310e-2947.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0H6I8_9CRYP1.930e-1031.06Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1IL05_GUITC3.630e-1031.97Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9304contigM-pyrifera_M_contig9304:2011..3990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000810.1
Exons3
Model size775
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9304.21502.1prot_M-pyrifera_M_contig9304.21502.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9304 2037..3682 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.0870337-UTR-M-pyrifera_M_contig9304:2010..20361622816843.0870337-UTR-M-pyrifera_M_contig9304:2010..2036Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9304 2011..2036 +
1692278211.1373694-UTR-M-pyrifera_M_contig9304:2010..20361692278211.1373694-UTR-M-pyrifera_M_contig9304:2010..2036Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9304 2011..2036 +
1622816843.1387446-UTR-M-pyrifera_M_contig9304:3682..39901622816843.1387446-UTR-M-pyrifera_M_contig9304:3682..3990Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9304 3683..3990 +
1692278211.1895945-UTR-M-pyrifera_M_contig9304:3682..39901692278211.1895945-UTR-M-pyrifera_M_contig9304:3682..3990Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9304 3683..3990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.0976422-CDS-M-pyrifera_M_contig9304:2036..21411622816843.0976422-CDS-M-pyrifera_M_contig9304:2036..2141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9304 2037..2141 +
1692278211.1515787-CDS-M-pyrifera_M_contig9304:2036..21411692278211.1515787-CDS-M-pyrifera_M_contig9304:2036..2141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9304 2037..2141 +
1622816843.1107886-CDS-M-pyrifera_M_contig9304:2862..29421622816843.1107886-CDS-M-pyrifera_M_contig9304:2862..2942Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9304 2863..2942 +
1692278211.1620603-CDS-M-pyrifera_M_contig9304:2862..29421692278211.1620603-CDS-M-pyrifera_M_contig9304:2862..2942Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9304 2863..2942 +
1622816843.1248546-CDS-M-pyrifera_M_contig9304:3426..36821622816843.1248546-CDS-M-pyrifera_M_contig9304:3426..3682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9304 3427..3682 +
1692278211.1762323-CDS-M-pyrifera_M_contig9304:3426..36821692278211.1762323-CDS-M-pyrifera_M_contig9304:3426..3682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9304 3427..3682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9304.21502.1

>prot_M-pyrifera_M_contig9304.21502.1 ID=prot_M-pyrifera_M_contig9304.21502.1|Name=mRNA_M-pyrifera_M_contig9304.21502.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
MEGPEELDDCVQTLQKEDLLDNDLTDYVASLVTAEANRGTQSSLLKVLKM
VRDRIQAELKTESRPEVRTLARALQIEDAAERKKFLQHTFTKLEELDEFV
KFVEEGIEYLGNDFGFALRTNMPQDHFDKMKAVYAEAAAIRRLYLQ*
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mRNA from alignment at M-pyrifera_M_contig9304:2011..3990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9304.21502.1 ID=mRNA_M-pyrifera_M_contig9304.21502.1|Name=mRNA_M-pyrifera_M_contig9304.21502.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at M-pyrifera_M_contig9304:2011..3990+ (Macrocystis pyrifera P11B4 male)
AGGTGTCGATAGTCTTGAGCGCAGCGATGGAAGGCCCGGAGGAGCTGGAC
GATTGCGTCCAAACCCTGCAGAAAGAGGACCTGTTGGACAACGACCTGAC
GGATTACGTCGCTAGCCTGGTGACGGCAGAGGTGAACCGCTATATGCGGA
ATCGTCCGCACTGCTGTCGTAGTTTTGCGTCGCGGCTTGCGCGCAACCGA
GTCGAACGATTGCCTCTTGCCGTACAAAAATGCACGGGATTTGTCAACGG
CAGCTGCAACAACAGCAGCAGCAACAGCAGTTACCCTATATGAGTTGCTA
GTTTACCCAACCGCCTAAAATATAGGACATTCGTTATTGCTTTACTTTCG
AGGTGGGTGAAGCCGGAGATCCTATTGGAAAATCTGAAGTCGGAAATCCG
CGCCGTCCTACCGAACATATCCCCAAAAAAGTTGTTTTTATTAGTCTTCC
ACTAACGCTCAAAGTTGACGACAGTTACAAGTATCCACCAGCGCGAGTTC
GTACGCACTTAGTGAGAGTTACATAGTACCCTATCTTACCGTGCTGACAT
TTACCAGACGAATCGTTTCTCGCGTATTCCCTGATATAGATTATCGCTTA
CGGTATTTCACCGCTGTGCCGGCGATAGACTATCGGTCGTTTTGTTTTGT
TTTTTAGCACAGCAGCCACTCTACCTGGCAGTGAAGCAAAGCACGAAGGC
AATATACCTGGTCTATTATAGTACAATACAACGGTCCAATTCATTCCGCG
TGACGGCCGACGCCCAGAACACGACAATACACACGGCACTCCTGTTGTCT
GGGGTTGACCAACATCGAGCTGACCTGACCACTTGTTTTTGCGGTTCCGC
AGGCAAACAGAGGCACTCAATCGAGTTTGCTGAAGGTCCTCAAGATGGTG
CGAGATCGGATCCAGGCGGAGTTGAAAACTGAGTGAGTACCGGAGGTATT
GAGTGGCACATGGCACTTTTCCGATCCAACTCGGTCAAATACGATTATAA
TCCCCGATTGGATCGGAAAAGTACCGGCGGTGATTTCCTGCAACTGGGCA
TCTGGAGAAGCGGGAAACAGCTCTAGAAAGGTCTTGGAGAAAAGTCCAAC
TCATTCTGAGGCGAGAAGCAGCAGTTTCGCACATTTTCGGGGCAAAAGCT
CGTGCGAACGTGCCGATAGCACCATTTCCAACTGACTGCAAATCCTACTG
CGTAAGAATCTGTTTCTCCTACTAAATAAATAACAAAGAGAAAGACATAC
CTGGTATTATATTGAGAGAGATATATACGACGATATTTTCCAGGTATTGT
TTCGTATTCATAGGAACATGAAATGGTTGACAACGTTTTAGTGATTTTCT
GTTGTTTGTATTGCCGTATCACACGTCTCCCCCACTTCCTTGTGTGTGCA
TCCTCAAACTCGACAGGTCACGGCCGGAGGTCCGCACGCTAGCACGGGCT
CTACAAATTGAAGACGCAGCAGAACGCAAGAAGTTTCTGCAACATACGTT
TACCAAGTTGGAGGAGCTAGATGAGTTCGTCAAGTTTGTGGAGGAGGGCA
TAGAGTATCTAGGAAACGACTTCGGGTTCGCGTTGCGAACGAACATGCCG
CAGGATCACTTCGACAAGATGAAGGCCGTCTACGCGGAGGCAGCAGCTAT
TCGGAGGTTGTACTTGCAATGATCCGCTGCTGCTGAATATTTCCGCGTAC
AACGGAGATTTTGTTGGTAGCACCAGGCCGTACTAAAAGAGTACTTCTAG
TCCCTTGTGTGAATGTCGAAAAAGTAACATGGAAGATCTCTCTTATTGGT
CAAGCGTTACGCCGTCTCCAGCAGCTGTCTCGTTTTGGTATTCGATGTGG
GGAAATAAGTCAGAGAACCTTAACGCGTCTAATTCAGGCTTCACCGTATG
GGGTTCTCACTCACATGGATAGGCAGGTATCATATAGCTGCCACGTCAAG
CAGTCCTGCCGCCGATGGTCTACAGCAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9304:2011..3990+

>mRNA_M-pyrifera_M_contig9304.21502.1 ID=mRNA_M-pyrifera_M_contig9304.21502.1|Name=mRNA_M-pyrifera_M_contig9304.21502.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig9304:2011..3990+ (Macrocystis pyrifera P11B4 male)
ATGGAAGGCCCGGAGGAGCTGGACGATTGCGTCCAAACCCTGCAGAAAGA
GGACCTGTTGGACAACGACCTGACGGATTACGTCGCTAGCCTGGTGACGG
CAGAGATGGAAGGCCCGGAGGAGCTGGACGATTGCGTCCAAACCCTGCAG
AAAGAGGACCTGTTGGACAACGACCTGACGGATTACGTCGCTAGCCTGGT
GACGGCAGAGGCAAACAGAGGCACTCAATCGAGTTTGCTGAAGGTCCTCA
AGATGGTGCGAGATCGGATCCAGGCGGAGTTGAAAACTGAGCAAACAGAG
GCACTCAATCGAGTTTGCTGAAGGTCCTCAAGATGGTGCGAGATCGGATC
CAGGCGGAGTTGAAAACTGAGTCACGGCCGGAGGTCCGCACGCTAGCACG
GGCTCTACAAATTGAAGACGCAGCAGAACGCAAGAAGTTTCTGCAACATA
CGTTTACCAAGTTGGAGGAGCTAGATGAGTTCGTCAAGTTTGTGGAGGAG
GGCATAGAGTATCTAGGAAACGACTTCGGGTTCGCGTTGCGAACGAACAT
GCCGCAGGATCACTTCGACAAGATGAAGGCCGTCTACGCGGAGGCAGCAG
CTATTCGGAGGTTGTACTTGCAATGAGTCACGGCCGGAGGTCCGCACGCT
AGCACGGGCTCTACAAATTGAAGACGCAGCAGAACGCAAGAAGTTTCTGC
AACATACGTTTACCAAGTTGGAGGAGCTAGATGAGTTCGTCAAGTTTGTG
GAGGAGGGCATAGAGTATCTAGGAAACGACTTCGGGTTCGCGTTGCGAAC
GAACATGCCGCAGGATCACTTCGACAAGATGAAGGCCGTCTACGCGGAGG
CAGCAGCTATTCGGAGGTTGTACTTGCAATGA
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