mRNA_M-pyrifera_M_contig93006.21495.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93006.21495.1
Unique NamemRNA_M-pyrifera_M_contig93006.21495.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93006.21495.1 vs. uniprot
Match: D2VNA9_NAEGR (Mitochondrial trans-2-enoyl-CoA reductase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VNA9_NAEGR)

HSP 1 Score: 110 bits (276), Expect = 1.300e-26
Identity = 59/129 (45.74%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 SLKADQVQVRMLAAPITPSDLSAVGGFGGNGV--LPATGGNEGYGVVEKVGSGVSDLREGDFVVPALPGAGTWATHTVLRGDCLCKVPETSQVEVAAVSAVNPSLAHCLLQ-MEELEAGDVVLQNNGGS 378
            S+K D+V ++MLAAPI P+D++ + G  G      PA  GNEG G+VE+VGSGV+ L++GD V+P+  G GTW TH V + + +  VP+   VE A++ +VNP  A+ LL    EL+ GDV++QN   S
Sbjct:   54 SVKNDEVVIKMLAAPINPADINTIQGVYGKSPKSFPAVPGNEGVGIVEEVGSGVTGLKKGDHVIPSNGGLGTWRTHLVCKAEDVTTVPKELPVEYASILSVNPCTAYRLLSDFAELKPGDVIIQNGANS 182          
BLAST of mRNA_M-pyrifera_M_contig93006.21495.1 vs. uniprot
Match: UPI0003315AAA (trans-2-enoyl-CoA reductase, mitochondrial n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI0003315AAA)

HSP 1 Score: 108 bits (269), Expect = 1.580e-25
Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   19 VQVRMLAAPITPSDLSAV-GGFGGNGVLPATGGNEGYGVVEKVGSGVSDLREGDFVVPALPGAGTWATHTVLRGDCLCKVPETSQVEVAAVSAVNPSLAHCLLQ-MEELEAGDVVLQNNGGSG 381
            V+V+MLAAPI PSD++ + G +G    LPA GGNEG G VE VGS V+ L+ GD+V+PA  G GTW T  V R D L +VP    ++ AA   VNP  A+ +L+  E+L  GD V+QN   SG
Sbjct:   74 VRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVGQVEAVGSDVTGLKPGDWVIPANAGLGTWRTEAVFRADTLIRVPSDIPLQSAATLGVNPCTAYRMLKDFEQLRPGDSVIQNASNSG 196          
BLAST of mRNA_M-pyrifera_M_contig93006.21495.1 vs. uniprot
Match: A0A8K0F4F6_ANDGO (Mitochondrial trans-2-enoyl-CoA reductase (NADPH) n=1 Tax=Andalucia godoyi TaxID=505711 RepID=A0A8K0F4F6_ANDGO)

HSP 1 Score: 106 bits (264), Expect = 5.770e-25
Identity = 67/131 (51.15%), Postives = 78/131 (59.54%), Query Frame = 1
Query:    1 SLKADQVQVRMLAAPITPSDLSAVGGFGG--NGVLPATGGNEGYGVVEKVGSGVSDLREGDFVVPALPGAGTWATHTVLRGDCLCKVP--ETSQVEVAAVSAVNPSLAHCLLQ-MEELEAGDVVLQNNGGS 378
            SL   QV VRM+AAPI P+DL+AV G  G      PAT GNEG G+VEKVGS V  L+ GD V+P  PG GTWA H V   D L  +P  +   VE AA  +VNP  A+ LL     L  GDVV+QN   S
Sbjct:   39 SLGDSQVLVRMVAAPINPADLNAVQGNYGIKTSAFPATAGNEGVGIVEKVGSLVKTLKAGDVVIPTKPGLGTWAQHLVASADSLDALPFGKDFPVEYAATLSVNPCTAYRLLSDFASLSKGDVVIQNAANS 169          
BLAST of mRNA_M-pyrifera_M_contig93006.21495.1 vs. uniprot
Match: A0A8C5NUT4_JACJA (Mitochondrial trans-2-enoyl-CoA reductase n=4 Tax=Jaculus jaculus TaxID=51337 RepID=A0A8C5NUT4_JACJA)

HSP 1 Score: 106 bits (265), Expect = 6.350e-25
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   19 VQVRMLAAPITPSDLSAV-GGFGGNGVLPATGGNEGYGVVEKVGSGVSDLREGDFVVPALPGAGTWATHTVLRGDCLCKVPETSQVEVAAVSAVNPSLAH-CLLQMEELEAGDVVLQNNGGSG 381
            V+VRMLAAPI PSD++ + G +G    LPA GGNEG G V +VGS V+ L+ GD+V+PA  G GTW T  V  G+ L +VP    ++ AA   VNP  A+  L+  E+L+ GD V+QN   SG
Sbjct:   73 VRVRMLAAPINPSDINMIQGNYGLLPKLPAVGGNEGVGEVIEVGSSVTGLKPGDWVIPANAGLGTWRTEAVFSGEALIRVPGDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSG 195          
BLAST of mRNA_M-pyrifera_M_contig93006.21495.1 vs. uniprot
Match: A0A5A8DJ74_CAFRO (PKS_ER domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJ74_CAFRO)

HSP 1 Score: 105 bits (263), Expect = 1.010e-24
Identity = 66/125 (52.80%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   16 QVQVRMLAAPITPSDLSAVGGFGGNG---VLPATGGNEGYGVVEKVGSGVSDLREGDFVVPALPGAGTWATHTVLRGDCLCKVP------ETSQVEVAAVSAVNPSLAHCLLQMEELEAGDVVLQ 363
            +V V+M+AAPIT  D S + GFG      VLPATGGNEG G+V+ VG+GVS   EGD VVP + G GTWATHTV   D L  V       E S V +AA  A  P+LA  LLQ   L  GDVV+Q
Sbjct:   56 EVLVKMIAAPITEFDASFISGFGAKRAGTVLPATGGNEGLGIVQGVGAGVSGFSEGDHVVPTVSGVGTWATHTVAAADHLAVVAAPSADNEMSAVMMAA-GAGAPALATALLQFASLSDGDVVVQ 179          
BLAST of mRNA_M-pyrifera_M_contig93006.21495.1 vs. uniprot
Match: A0A091E515_FUKDA (Trans-2-enoyl-CoA reductase, mitochondrial n=3 Tax=Bathyergidae TaxID=10167 RepID=A0A091E515_FUKDA)

HSP 1 Score: 105 bits (263), Expect = 1.130e-24
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 1
Query:   19 VQVRMLAAPITPSDLSAV-GGFGGNGVLPATGGNEGYGVVEKVGSGVSDLREGDFVVPALPGAGTWATHTVLRGDCLCKVPETSQVEVAAVSAVNPSLAH-CLLQMEELEAGDVVLQNNGGSG 381
            ++VRMLAAPI PSD++ + G +G    LPA GGNEG G V  VGS V+ L+ GD+V+P+ PG GTW T  V   + L K+P    ++ AA   VNP  A+  L+  E+L+ GD V+QN   SG
Sbjct:   73 IRVRMLAAPINPSDINMIQGNYGLLPKLPAVGGNEGVGQVVAVGSSVTGLKPGDWVIPSNPGLGTWRTEAVFSEEALIKIPSDIPLQSAATLGVNPCTAYRMLVDFEQLQPGDSVIQNASNSG 195          
BLAST of mRNA_M-pyrifera_M_contig93006.21495.1 vs. uniprot
Match: UPI00053F70AE (enoyl-[acyl-carrier-protein] reductase, mitochondrial isoform X1 n=3 Tax=Fukomys damarensis TaxID=885580 RepID=UPI00053F70AE)

HSP 1 Score: 105 bits (263), Expect = 1.420e-24
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 1
Query:   19 VQVRMLAAPITPSDLSAV-GGFGGNGVLPATGGNEGYGVVEKVGSGVSDLREGDFVVPALPGAGTWATHTVLRGDCLCKVPETSQVEVAAVSAVNPSLAH-CLLQMEELEAGDVVLQNNGGSG 381
            ++VRMLAAPI PSD++ + G +G    LPA GGNEG G V  VGS V+ L+ GD+V+P+ PG GTW T  V   + L K+P    ++ AA   VNP  A+  L+  E+L+ GD V+QN   SG
Sbjct:   92 IRVRMLAAPINPSDINMIQGNYGLLPKLPAVGGNEGVGQVVAVGSSVTGLKPGDWVIPSNPGLGTWRTEAVFSEEALIKIPSDIPLQSAATLGVNPCTAYRMLVDFEQLQPGDSVIQNASNSG 214          
BLAST of mRNA_M-pyrifera_M_contig93006.21495.1 vs. uniprot
Match: A0A485KX24_9STRA (Aste57867_12875 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KX24_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.460e-24
Identity = 63/128 (49.22%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 SLKADQVQVRMLAAPITPSDLSAV-GGFGGNGVLPATGGNEGYGVVEKVGSGVSDLREGDFVVPALPGAGTWATHTVLRGDCLCKVPETSQVEVAAVSAVNPSLAHCLL-QMEELEAGDVVLQNNGGS 378
            +L+A +V ++ LAAPI P+DL  + GG+G    LPA GGNEG   V  VGSGV+ L+ GD V+PA+ G GTW T  V +   L  VP T  VE AA  AVNP  A+ LL    +L  GDVV+QN   S
Sbjct:   37 ALQAGEVALKFLAAPINPADLHMIRGGYGIKPTLPAVGGNEGVARVAAVGSGVTGLKVGDRVIPAVAGFGTWRTDAVAKEADLLAVPSTIPVEYAATLAVNPCTAYRLLADFAKLGKGDVVIQNGANS 164          
BLAST of mRNA_M-pyrifera_M_contig93006.21495.1 vs. uniprot
Match: A0A1S3GHY8_DIPOR (trans-2-enoyl-CoA reductase, mitochondrial n=3 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3GHY8_DIPOR)

HSP 1 Score: 105 bits (262), Expect = 1.570e-24
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 1
Query:    1 SLKADQVQVRMLAAPITPSDLSAV-GGFGGNGVLPATGGNEGYGVVEKVGSGVSDLREGDFVVPALPGAGTWATHTVLRGDCLCKVPETSQVEVAAVSAVNPSLAH-CLLQMEELEAGDVVLQNNGGSG 381
            ++K   V VRMLAAPI PSD++ + G +G    LPA GGNEG G V  VGS V+ L  GD+V+PA  G GTW T  V   + L +VP    ++ AA   VNP  A+  L+  E+L+ GD V+QN   SG
Sbjct:   67 AVKGSDVHVRMLAAPINPSDINMIQGNYGFLPKLPAVGGNEGIGKVVAVGSSVTGLHPGDWVIPANAGLGTWRTEAVFSEEALIQVPNDISLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSG 195          
BLAST of mRNA_M-pyrifera_M_contig93006.21495.1 vs. uniprot
Match: A0A834A863_9CHIR (Mitochondrial trans-2-enoyl-CoA reductase n=1 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A834A863_9CHIR)

HSP 1 Score: 102 bits (253), Expect = 2.490e-24
Identity = 58/124 (46.77%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   19 VQVRMLAAPITPSDLSA--VGGFGGNGVLPATGGNEGYGVVEKVGSGVSDLREGDFVVPALPGAGTWATHTVLRGDCLCKVPETSQVEVAAVSAVNPSLAH-CLLQMEELEAGDVVLQNNGGSG 381
            V VRMLAAP+ PSD++   VG +G    LPA GGNEG G V  VGS V+ ++ GD+V+PA  G GTW T  V + + L  VP    ++ AA  +VNP  A+  L+  E+L  GD V+QN   SG
Sbjct:   23 VHVRMLAAPVNPSDINMIQVGNYGLLPKLPAVGGNEGVGQVVAVGSSVTGVKPGDWVIPAAAGLGTWRTQAVFKEEALIAVPSDIPLQSAATLSVNPCTAYRMLVDFEQLRPGDSVIQNASNSG 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93006.21495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D2VNA9_NAEGR1.300e-2645.74Mitochondrial trans-2-enoyl-CoA reductase n=1 Tax=... [more]
UPI0003315AAA1.580e-2549.59trans-2-enoyl-CoA reductase, mitochondrial n=1 Tax... [more]
A0A8K0F4F6_ANDGO5.770e-2551.15Mitochondrial trans-2-enoyl-CoA reductase (NADPH) ... [more]
A0A8C5NUT4_JACJA6.350e-2548.78Mitochondrial trans-2-enoyl-CoA reductase n=4 Tax=... [more]
A0A5A8DJ74_CAFRO1.010e-2452.80PKS_ER domain-containing protein n=2 Tax=Cafeteria... [more]
A0A091E515_FUKDA1.130e-2447.15Trans-2-enoyl-CoA reductase, mitochondrial n=3 Tax... [more]
UPI00053F70AE1.420e-2447.15enoyl-[acyl-carrier-protein] reductase, mitochondr... [more]
A0A485KX24_9STRA1.460e-2449.22Aste57867_12875 protein n=1 Tax=Aphanomyces stella... [more]
A0A1S3GHY8_DIPOR1.570e-2446.51trans-2-enoyl-CoA reductase, mitochondrial n=3 Tax... [more]
A0A834A863_9CHIR2.490e-2446.77Mitochondrial trans-2-enoyl-CoA reductase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93006contigM-pyrifera_M_contig93006:271..758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score105.9
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog42254.XP_004603779.1
Preferred nameMECR
KEGG rclassRC00052
KEGG koko:K07512
KEGG ReactionR01278,R03776,R03856,R03989,R04753,R06985,R07162
KEGG Pathwayko00062,ko01100,ko01212,map00062,map01100,map01212
KEGG ModuleM00085
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008134,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0016628,GO:0016922,GO:0019166,GO:0019395,GO:0019752,GO:0030258,GO:0031974,GO:0032787,GO:0034440,GO:0035257,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0051427,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:1901575
EggNOG free text desc.trans-2-enoyl-CoA reductase (NADPH) activity
EggNOG OGs38GDB@33154,3B9JT@33208,3CSB2@33213,3JG98@40674,482PV@7711,48XQJ@7742,COG0604@1,KOG0025@2759
EC1.3.1.38
COG Functional cat.CK
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size381
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93006.21495.1prot_M-pyrifera_M_contig93006.21495.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93006 301..758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.7821898-UTR-M-pyrifera_M_contig93006:270..3001622816842.7821898-UTR-M-pyrifera_M_contig93006:270..300Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93006 271..300 +
1692278210.9449363-UTR-M-pyrifera_M_contig93006:270..3001692278210.9449363-UTR-M-pyrifera_M_contig93006:270..300Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93006 271..300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.7936609-CDS-M-pyrifera_M_contig93006:300..3391622816842.7936609-CDS-M-pyrifera_M_contig93006:300..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93006 301..339 +
1692278210.9609563-CDS-M-pyrifera_M_contig93006:300..3391692278210.9609563-CDS-M-pyrifera_M_contig93006:300..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93006 301..339 +
1622816842.8057566-CDS-M-pyrifera_M_contig93006:446..7581622816842.8057566-CDS-M-pyrifera_M_contig93006:446..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93006 447..758 +
1692278210.9721673-CDS-M-pyrifera_M_contig93006:446..7581692278210.9721673-CDS-M-pyrifera_M_contig93006:446..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93006 447..758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93006.21495.1

>prot_M-pyrifera_M_contig93006.21495.1 ID=prot_M-pyrifera_M_contig93006.21495.1|Name=mRNA_M-pyrifera_M_contig93006.21495.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MLAAPITPSDLSAVGGFGGNGVLPATGGNEGYGVVEKVGSGVSDLREGDF
VVPALPGAGTWATHTVLRGDCLCKVPETSQVEVAAVSAVNPSLAHCLLQM
EELEAGDVVLQNNGGSG
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mRNA from alignment at M-pyrifera_M_contig93006:271..758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93006.21495.1 ID=mRNA_M-pyrifera_M_contig93006.21495.1|Name=mRNA_M-pyrifera_M_contig93006.21495.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=488bp|location=Sequence derived from alignment at M-pyrifera_M_contig93006:271..758+ (Macrocystis pyrifera P11B4 male)
AGCTTGAAGGCAGACCAAGTGCAGGTGAGGATGCTTGCAGCTCCCATTAC GCCATCCGATCTCTCAGCAGTACGGCTAAAAAATTGGAGCAATTTGAGCG CATTGGTTTTTGGGTTTGTGTGGGGGTATTGTGGGGAGTATTTGGATTTT TTGTTTCATTTTCCTTGGTGTTGCAGGTTGGAGGGTTCGGAGGCAATGGT GTGCTTCCCGCGACGGGCGGGAACGAAGGGTATGGCGTGGTGGAGAAGGT AGGGAGCGGCGTTTCTGACTTGCGCGAGGGCGATTTCGTGGTTCCTGCGC TTCCTGGGGCGGGCACGTGGGCGACGCACACGGTGTTGCGAGGAGATTGC CTGTGCAAGGTCCCGGAGACGTCGCAAGTGGAGGTGGCAGCGGTGAGCGC GGTCAACCCTTCTCTGGCGCACTGCTTGCTGCAGATGGAGGAGCTGGAGG CTGGAGACGTGGTGCTGCAGAACAACGGAGGCAGCGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93006:271..758+

>mRNA_M-pyrifera_M_contig93006.21495.1 ID=mRNA_M-pyrifera_M_contig93006.21495.1|Name=mRNA_M-pyrifera_M_contig93006.21495.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig93006:271..758+ (Macrocystis pyrifera P11B4 male)
ATGCTTGCAGCTCCCATTACGCCATCCGATCTCTCAGCAATGCTTGCAGC
TCCCATTACGCCATCCGATCTCTCAGCAGTTGGAGGGTTCGGAGGCAATG
GTGTGCTTCCCGCGACGGGCGGGAACGAAGGGTATGGCGTGGTGGAGAAG
GTAGGGAGCGGCGTTTCTGACTTGCGCGAGGGCGATTTCGTGGTTCCTGC
GCTTCCTGGGGCGGGCACGTGGGCGACGCACACGGTGTTGCGAGGAGATT
GCCTGTGCAAGGTCCCGGAGACGTCGCAAGTGGAGGTGGCAGCGGTGAGC
GCGGTCAACCCTTCTCTGGCGCACTGCTTGCTGCAGATGGAGGAGCTGGA
GGCTGGAGACGTGGTGCTGCAGAACAACGGAGGCAGCGGAGTTGGAGGGT
TCGGAGGCAATGGTGTGCTTCCCGCGACGGGCGGGAACGAAGGGTATGGC
GTGGTGGAGAAGGTAGGGAGCGGCGTTTCTGACTTGCGCGAGGGCGATTT
CGTGGTTCCTGCGCTTCCTGGGGCGGGCACGTGGGCGACGCACACGGTGT
TGCGAGGAGATTGCCTGTGCAAGGTCCCGGAGACGTCGCAAGTGGAGGTG
GCAGCGGTGAGCGCGGTCAACCCTTCTCTGGCGCACTGCTTGCTGCAGAT
GGAGGAGCTGGAGGCTGGAGACGTGGTGCTGCAGAACAACGGAGGCAGCG
GA
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