mRNA_M-pyrifera_M_contig92950.21491.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92950.21491.1
Unique NamemRNA_M-pyrifera_M_contig92950.21491.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92950.21491.1 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 6.060e-25
Identity = 51/105 (48.57%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:    1 RSFQKNFGTCAYSNWANAGSPFELKHAAFNVVFKHVANLHPVFNLSDSMHLLKKLVNALWHSDIDTKSRSLMKLWFNPKTGDIDWCNSLSRPLKKYTKRRR*GEG 315
            RSFQK     A+S WA   S FE +   F V FKH ++  PVFN+SD +HLLKK+VNALWHSDI +K R L KLW+N    D +W +   + L+K  K    G G
Sbjct:  120 RSFQKYLAEIAFSEWARGDSAFEKRMGDFKVAFKHPSHGGPVFNMSDPVHLLKKVVNALWHSDIPSKQRDLKKLWYNEAAEDYEWVSFSLKTLEKVWKEEEAGGG 224
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BLAST of mRNA_M-pyrifera_M_contig92950.21491.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 8.030e-21
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 RSFQKNFGTCAYSNWANAGSPFELKHAAFNVVFKHVANLHPVFNLSDSMHLLKKLVNALWHSDIDTKSRSLMKLWFNPKTGDIDWCNSLSRPLKK 285
            RSFQ++F T  +S WA + S FE +H  + V FKH  +  PVFN+SD +HLLKK+VNALW+S +D+K R L  LW+NP T   +  +   + L+K
Sbjct:  506 RSFQQHFATTTFSEWAKSDSVFEQRHKDYPVAFKHPHHDGPVFNMSDPVHLLKKVVNALWYSGLDSKERHLQNLWWNPLTDAPELASFSLKTLEK 600
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BLAST of mRNA_M-pyrifera_M_contig92950.21491.1 vs. uniprot
Match: A0A6H5KYD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.890e-15
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:   70 LKHAAFNVVFKHVANLHPVFNLSDSMHLLKKLVNALWHSDIDTKSRSLMKLWFNPKTGDIDWCNSLSRPLKKYTKRRR*GEG 315
            ++H  F V F+H  +  PVFN+S+ +HLLKK+VNALWHS +  K R L  LW++PKT + +W +   + L++   +   G G
Sbjct:    1 MRHKDFKVAFRHPQHGRPVFNMSEPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTEEEEWVSFSLKTLEEVWNQEEAGGG 82
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BLAST of mRNA_M-pyrifera_M_contig92950.21491.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.290e-12
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 RSFQKNFGTCAYSNWANAGSPFELKHAAFNVVFKHVANLHPVFNLSDSMHLLKKLVNALWHSDIDTKSRSL 213
            RSFQ +     + +W     P E   A F V F H  +LH VFN+SD MH+LKK+VNALWHSDI  K R L
Sbjct:  749 RSFQTHAAILGFCHWIKG--PKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQL 817
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BLAST of mRNA_M-pyrifera_M_contig92950.21491.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 3.310e-12
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 RSFQKNFGTCAYSNWANAGSPFELKHAAFNVVFKHVANLHPVFNLSDSMHLLKKLVNALWHSDIDTKSRSL 213
            RSFQ +     + +W     P E   A F V F H  +LH VFN+SD MH+LKK+VNALWHSDI  K R L
Sbjct:  658 RSFQTHAAILGFCHWIKG--PKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQL 726
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BLAST of mRNA_M-pyrifera_M_contig92950.21491.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 7.070e-11
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:    1 RSFQKNFGTCAYSNWANAGSPFELKHAAFNVVFKHVANLHPVFNLSDSMHLLKKLVNALWHSDIDTKSRSL 213
            RSFQ +     +  W     P E    +F V   H  +LH VFN+SD MH+LKK+VNALWHSDI  K R L
Sbjct:  556 RSFQTHAAISGFCRWIKG--PQEGSFTSFKVGILHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQL 624
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BLAST of mRNA_M-pyrifera_M_contig92950.21491.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.590e-6
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    1 RSFQKNFGTCAYSNWANAGSPFELKHAAFNVVFKHVANLHPVFNLSDSMHLLKKLVNALWHSDI 192
            RSFQ    T  +S +A      E   + F V  +H  +L P+FN+SD  HL+KK+ N LWHSD+
Sbjct:  317 RSFQLRAATVEFSAFAQGDD--EESFSNFPVALRHSVHLGPMFNVSDPPHLVKKIANTLWHSDL 378
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92950.21491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LK65_ECTSI6.060e-2548.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFP1_9PHAE8.030e-2147.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYD6_9PHAE2.890e-1541.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE3.290e-1250.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI3.310e-1250.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE7.070e-1147.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE6.590e-642.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92950contigM-pyrifera_M_contig92950:34..458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size425
Cds size162
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92950.21491.1prot_M-pyrifera_M_contig92950.21491.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92950 178..339 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.6054108-UTR-M-pyrifera_M_contig92950:33..1771622816842.6054108-UTR-M-pyrifera_M_contig92950:33..177Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92950 34..177 +
1692278210.8351355-UTR-M-pyrifera_M_contig92950:33..1771692278210.8351355-UTR-M-pyrifera_M_contig92950:33..177Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92950 34..177 +
1622816842.6278179-UTR-M-pyrifera_M_contig92950:339..4581622816842.6278179-UTR-M-pyrifera_M_contig92950:339..458Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92950 340..458 +
1692278210.8587515-UTR-M-pyrifera_M_contig92950:339..4581692278210.8587515-UTR-M-pyrifera_M_contig92950:339..458Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92950 340..458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.6164389-CDS-M-pyrifera_M_contig92950:177..3391622816842.6164389-CDS-M-pyrifera_M_contig92950:177..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92950 178..339 +
1692278210.8477666-CDS-M-pyrifera_M_contig92950:177..3391692278210.8477666-CDS-M-pyrifera_M_contig92950:177..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92950 178..339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92950.21491.1

>prot_M-pyrifera_M_contig92950.21491.1 ID=prot_M-pyrifera_M_contig92950.21491.1|Name=mRNA_M-pyrifera_M_contig92950.21491.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MHLLKKLVNALWHSDIDTKSRSLMKLWFNPKTGDIDWCNSLSRPLKKYTK
RRR*
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mRNA from alignment at M-pyrifera_M_contig92950:34..458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92950.21491.1 ID=mRNA_M-pyrifera_M_contig92950.21491.1|Name=mRNA_M-pyrifera_M_contig92950.21491.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=425bp|location=Sequence derived from alignment at M-pyrifera_M_contig92950:34..458+ (Macrocystis pyrifera P11B4 male)
CGGTCTTTCCAGAAGAACTTCGGAACGTGCGCCTACTCGAACTGGGCGAA
TGCTGGAAGCCCGTTCGAGCTAAAACACGCTGCCTTCAACGTGGTGTTCA
AGCACGTTGCTAATTTGCATCCGGTCTTCAACCTCTCGGACTCCATGCAT
CTCCTCAAAAAGCTGGTTAACGCTTTGTGGCACAGTGACATCGACACGAA
ATCCCGTTCGCTGATGAAACTGTGGTTCAACCCGAAGACCGGCGACATCG
ATTGGTGTAATTCTCTCTCAAGACCCTTGAAAAAGTATACAAAGAGGAGG
AGATAGGGGGAGGGGTGCGGACGCCAGAAGAGCAGGTGGCATGCTTAACG
CGATTTCGCAGCCTCGGCCTGGAGTAGTTTCACAGGACCAGCCACAGCTG
TATGAGCGTTCCGTTGTCGGCGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92950:34..458+

>mRNA_M-pyrifera_M_contig92950.21491.1 ID=mRNA_M-pyrifera_M_contig92950.21491.1|Name=mRNA_M-pyrifera_M_contig92950.21491.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig92950:34..458+ (Macrocystis pyrifera P11B4 male)
ATGCATCTCCTCAAAAAGCTGGTTAACGCTTTGTGGCACAGTGACATCGA
CACGAAATCCCGTTCGCTGATGAAACTGTGGTTCAACCCGAAGACCGGCG
ACATCGATTGGTGTAATTCTCTCTCAAGACCCTTGAAAAAGTATACAAAG
AGGAGGAGATAGATGCATCTCCTCAAAAAGCTGGTTAACGCTTTGTGGCA
CAGTGACATCGACACGAAATCCCGTTCGCTGATGAAACTGTGGTTCAACC
CGAAGACCGGCGACATCGATTGGTGTAATTCTCTCTCAAGACCCTTGAAA
AAGTATACAAAGAGGAGGAGATAG
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