mRNA_M-pyrifera_M_contig92916.21487.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92916.21487.1
Unique NamemRNA_M-pyrifera_M_contig92916.21487.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92916.21487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92916contigM-pyrifera_M_contig92916:229..708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.4384484-CDS-M-pyrifera_M_contig92916:228..2751622816842.4384484-CDS-M-pyrifera_M_contig92916:228..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92916 229..275 -
1692278210.717959-CDS-M-pyrifera_M_contig92916:228..2751692278210.717959-CDS-M-pyrifera_M_contig92916:228..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92916 229..275 -
1622816842.4507318-CDS-M-pyrifera_M_contig92916:323..7081622816842.4507318-CDS-M-pyrifera_M_contig92916:323..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92916 324..708 -
1692278210.7316768-CDS-M-pyrifera_M_contig92916:323..7081692278210.7316768-CDS-M-pyrifera_M_contig92916:323..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92916 324..708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92916.21487.1prot_M-pyrifera_M_contig92916.21487.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92916 229..708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92916.21487.1

>prot_M-pyrifera_M_contig92916.21487.1 ID=prot_M-pyrifera_M_contig92916.21487.1|Name=mRNA_M-pyrifera_M_contig92916.21487.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
MELGLVFSVDVHPDGREYAVGFNGGKKVVIFSVENHEELRRIDVPDYVYS
ARYSPDGGRLAVAHESGLVMVDSVSGEELGRWRERKRRYDVVFYDGGSKL
VASSGGSGPSPYLQLLDGTTLASIGTLDSGLSSGEVKWWRLEDR
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mRNA from alignment at M-pyrifera_M_contig92916:229..708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92916.21487.1 ID=mRNA_M-pyrifera_M_contig92916.21487.1|Name=mRNA_M-pyrifera_M_contig92916.21487.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig92916:229..708- (Macrocystis pyrifera P11B4 male)
ATGGAGTTGGGATTGGTGTTTAGTGTGGATGTGCATCCTGATGGGAGGGA
GTATGCAGTGGGGTTTAATGGAGGCAAGAAGGTGGTGATTTTCTCTGTGG
AGAATCATGAGGAGTTGCGTCGTATTGACGTTCCTGACTATGTGTACAGT
GCCCGTTACAGTCCTGATGGTGGTAGGTTGGCAGTGGCACATGAATCTGG
ATTGGTGATGGTGGATAGTGTGAGTGGTGAGGAGTTGGGGAGGTGGAGGG
AGAGGAAGCGTCGTTATGATGTAGTGTTCTATGATGGTGGAAGCAAGCTC
GTGGCTTCGTCAGGGGGTAGTGGACCCTCCCCTTATCTCCAGCTGCTTGA
TGGCACGACTCTGGCATCGATTGGGACTCTGGATTGTCCCACCAATGCCA
TCTGCCTCAGCTACCATGATGGTGTTCTTGCAGCTGGATTGAGTAGTGGA
GAAGTGAAGTGGTGGAGGTTGGAGGATCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92916:229..708-

>mRNA_M-pyrifera_M_contig92916.21487.1 ID=mRNA_M-pyrifera_M_contig92916.21487.1|Name=mRNA_M-pyrifera_M_contig92916.21487.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig92916:229..708- (Macrocystis pyrifera P11B4 male)
ATGGAGTTGGGATTGGTGTTTAGTGTGGATGTGCATCCTGATGGGAGGGA
GTATGCAGTGGGGTTTAATGGAGGCAAGAAGGTGGTGATTTTCTCTGTGG
AGAATCATGAGGAGTTGCGTCGTATTGACGTTCCTGACTATGTGTACAGT
GCCCGTTACAGTCCTGATGGTGGTAGGTTGGCAGTGGCACATGAATCTGG
ATTGGTGATGGTGGATAGTGTGAGTGGTGAGGAGTTGGGGAGGTGGAGGG
AGAGGAAGCGTCGTTATGATGTAGTGTTCTATGATGGTGGAAGCAAGCTC
GTGGCTTCGTCAGGGGGTAGTGGACCCTCCCCTTATCTCCAGCTGCTTGA
TGGCACGACTCTGGCATCGATTGGGACTCTGGATTATGGAGTTGGGATTG
GTGTTTAGTGTGGATGTGCATCCTGATGGGAGGGAGTATGCAGTGGGGTT
TAATGGAGGCAAGAAGGTGGTGATTTTCTCTGTGGAGAATCATGAGGAGT
TGCGTCGTATTGACGTTCCTGACTATGTGTACAGTGCCCGTTACAGTCCT
GATGGTGGTAGGTTGGCAGTGGCACATGAATCTGGATTGGTGATGGTGGA
TAGTGTGAGTGGTGAGGAGTTGGGGAGGTGGAGGGAGAGGAAGCGTCGTT
ATGATGTAGTGTTCTATGATGGTGGAAGCAAGCTCGTGGCTTCGTCAGGG
GGTAGTGGACCCTCCCCTTATCTCCAGCTGCTTGATGGCACGACTCTGGC
ATCGATTGGGACTCTGGATTCTGGATTGAGTAGTGGAGAAGTGAAGTGGT
GGAGGTTGGAGGATCGGCTGGATTGAGTAGTGGAGAAGTGAAGTGGTGGA
GGTTGGAGGATCGG
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