mRNA_M-pyrifera_M_contig92915.21486.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92915.21486.1
Unique NamemRNA_M-pyrifera_M_contig92915.21486.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92915.21486.1 vs. uniprot
Match: UPI000C1D40C7 (mannose-1-phosphate guanylyltransferase 1-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D40C7)

HSP 1 Score: 124 bits (311), Expect = 6.650e-34
Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   37 STVIGSVLIDPSARIGAGCVLGPXXXXXXXXXVEDGARIVRSTVLGGARVCAHALVSSSIIGWASTVGRWCRVENVSVLGEDVTVKDEICLNGAAILPHKGIKESVYTPGTIV 375
            S +IG+VL+D SA+IG GC++GP         VE G R+ R T++ G R+  HA +SS IIGW STVG+W R+EN+S+LGEDV V DEI  NG  +LPHK IK S+  P  ++
Sbjct:   39 SNIIGNVLVDESAKIGEGCLIGPDVAIGPCCVVESGVRLSRCTLMRGVRIKNHACISSCIIGWHSTVGQWARIENMSILGEDVHVGDEIYSNGGVVLPHKEIKSSILKPRIVL 151          
BLAST of mRNA_M-pyrifera_M_contig92915.21486.1 vs. uniprot
Match: A0A3P6BU38_BRAOL (Mannose-1-phosphate guanylyltransferase n=1 Tax=Brassica oleracea TaxID=3712 RepID=A0A3P6BU38_BRAOL)

HSP 1 Score: 128 bits (321), Expect = 3.410e-33
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   43 VIGSVLIDPSARIGAGCVLGPXXXXXXXXXVEDGARIVRSTVLGGARVCAHALVSSSIIGWASTVGRWCRVENVSVLGEDVTVKDEICLNGAAILPHKGIKESVYTPG 366
            ++G+VL+D +A+IG GC++GP         VE G R+ R TV+ GAR+  HA +SSSIIGW STVG+W R+EN+++LGEDV V+DEI  NG  +LPHK IK ++  PG
Sbjct:  254 IVGNVLVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMSGARIKKHACISSSIIGWHSTVGQWARIENMTILGEDVHVRDEIYSNGGVVLPHKEIKSNILMPG 361          
BLAST of mRNA_M-pyrifera_M_contig92915.21486.1 vs. uniprot
Match: A0A078G1Q2_BRANA (Mannose-1-phosphate guanylyltransferase n=47 Tax=Magnoliopsida TaxID=3398 RepID=A0A078G1Q2_BRANA)

HSP 1 Score: 127 bits (319), Expect = 6.350e-33
Identity = 59/108 (54.63%), Postives = 80/108 (74.07%), Query Frame = 1
Query:   43 VIGSVLIDPSARIGAGCVLGPXXXXXXXXXVEDGARIVRSTVLGGARVCAHALVSSSIIGWASTVGRWCRVENVSVLGEDVTVKDEICLNGAAILPHKGIKESVYTPG 366
            ++G+VL+D +A+IG GC++GP    XX   VE G R+ R TV+ GAR+  HA +SSSIIGW STVG+W R+EN+++LGEDV V+DEI  NG  +LPHK IK ++  PG
Sbjct:  251 IVGNVLVDETAKIGEGCLIGPDVAIXXGCIVESGVRLSRCTVMRGARIKKHACISSSIIGWHSTVGQWARIENMTILGEDVHVRDEIYSNGGVVLPHKEIKSNILMPG 358          
BLAST of mRNA_M-pyrifera_M_contig92915.21486.1 vs. uniprot
Match: A0A484EHA7_BRELC (Mannose-1-phosphate guanylyltransferase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHA7_BRELC)

HSP 1 Score: 127 bits (318), Expect = 8.760e-33
Identity = 62/113 (54.87%), Postives = 78/113 (69.03%), Query Frame = 1
Query:   40 TVIGSVLIDPSARIGAGCVLGPXXXXXXXXXVEDGARIVRSTVLGGARVCAHALVSSSIIGWASTVGRWCRVENVSVLGEDVTVKDEICLNGAAILPHKGIKESVYTPGTIVM 378
            T +G+VL+D SA IG  C+LGP         +EDG R+ R+T+L G  V A++ + SSIIGW ST+GRWCRVE  +V+GEDV VKDE  +NG  ILPHK I  S+  PGTIVM
Sbjct:  247 TFLGNVLVDSSATIGDKCLLGPNVVIGPKCVIEDGVRMSRTTLLRGVTVRANSWIQSSIIGWGSTIGRWCRVEGTTVVGEDVQVKDEKFINGGLILPHKAISTSLPDPGTIVM 359          
BLAST of mRNA_M-pyrifera_M_contig92915.21486.1 vs. uniprot
Match: H3GA81_PHYRM (Mannose-1-phosphate guanylyltransferase n=22 Tax=Oomycota TaxID=4762 RepID=H3GA81_PHYRM)

HSP 1 Score: 126 bits (316), Expect = 1.720e-32
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = 1
Query:   37 STVIGSVLIDPSARIGAGCVLGPXXXXXXXXXVEDGARIVRSTVLGGARVCAHALVSSSIIGWASTVGRWCRVENVSVLGEDVTVKDEICLNGAAILPHKGIKESVYTPGTIVM 378
            S  IG+V++DP+A IG GC++G XXXXXXXXX EDG R+ R+T+L G  V A++ + SSIIGW ST+GRWCR+E  +V+GEDV VKDE  +NG  ILPHK I  S+  PGTIVM
Sbjct:  246 SKFIGNVMVDPTAVIGEGCLIGXXXXXXXXXXXEDGVRLSRTTLLRGVTVRANSWIQSSIIGWGSTIGRWCRIEGTTVVGEDVQVKDEKFINGGLILPHKAISASIPEPGTIVM 359          
BLAST of mRNA_M-pyrifera_M_contig92915.21486.1 vs. uniprot
Match: A0A7S0G5G3_9RHOD (Mannose-1-phosphate guanylyltransferase n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G5G3_9RHOD)

HSP 1 Score: 126 bits (317), Expect = 2.020e-32
Identity = 64/123 (52.03%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   10 PEVQVSRGASTVIGSVLIDPSARIGAGCVLGPXXXXXXXXXVEDGARIVRSTVLGGARVCAHALVSSSIIGWASTVGRWCRVENVSVLGEDVTVKDEICLNGAAILPHKGIKESVYTPGTIVM 378
            P   V RG + +IG+VLID +A++    +LGP         VEDGARI+ S VL G++V AHA V  +I+GW S+VG+W R +NV+VLGEDV VK+ +CLNG  +LPHK +KE +Y P TIVM
Sbjct:  268 PAALVPRGGN-IIGNVLIDKTAQVSETAILGPDVVIGANCVVEDGARILGSAVLKGSKVGAHAFVRKTIVGWDSSVGKWARTDNVTVLGEDVKVKEGVCLNGVKVLPHKSLKEDLYEP-TIVM 388          
BLAST of mRNA_M-pyrifera_M_contig92915.21486.1 vs. uniprot
Match: A0A0A9MMZ9_ARUDO (NTP_transferase domain-containing protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9MMZ9_ARUDO)

HSP 1 Score: 122 bits (307), Expect = 2.140e-32
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   43 VIGSVLIDPSARIGAGCVLGPXXXXXXXXXVEDGARIVRSTVLGGARVCAHALVSSSIIGWASTVGRWCRVENVSVLGEDVTVKDEICLNGAAILPHKGIKESVYTPGTIV 375
            V+G+VL+  SA+IG GC++GP    XX   VEDG R+ R TV+ G R+  HA +S+SIIGW STVG+W R+EN+++LGEDV V DE+  NG  +LPHK IK S+  P  ++
Sbjct:  117 VVGNVLVHESAKIGEGCLIGPDVAIXXGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIVM 227          
BLAST of mRNA_M-pyrifera_M_contig92915.21486.1 vs. uniprot
Match: A0A0A9F6Y0_ARUDO (GSVIVT00018410001 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9F6Y0_ARUDO)

HSP 1 Score: 120 bits (301), Expect = 2.180e-32
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   43 VIGSVLIDPSARIGAGCVLGPXXXXXXXXXVEDGARIVRSTVLGGARVCAHALVSSSIIGWASTVGRWCRVENVSVLGEDVTVKDEICLNGAAILPHKGIKESVYTPGTIV 375
            VIG+VL+  SARIG GC++GP   XXXXX VEDG R+ R TV+ G  +  HA +S+SIIGW STVG+W R+EN+++LGEDV V DE+  NG  +LPHK IK S+  P  ++
Sbjct:   41 VIGNVLVHESARIGEGCLIGPDVAXXXXXVVEDGVRLSRCTVMRGVCIKKHACISNSIIGWHSTVGQWARLENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIVM 151          
BLAST of mRNA_M-pyrifera_M_contig92915.21486.1 vs. uniprot
Match: K1QGL9_CRAGI (Mannose-1-phosphate guanyltransferase beta n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QGL9_CRAGI)

HSP 1 Score: 119 bits (299), Expect = 3.580e-32
Identity = 68/111 (61.26%), Postives = 84/111 (75.68%), Query Frame = 1
Query:   43 VIGSVLIDPSARIGAGCVLGPXXXXXXXXXVEDGARIVRSTVLGGARVCAHALVSSSIIGWASTVGRWCRVENVSVLGEDVTVKDEICLNGAAILPHKGIKESVYTPGTIV 375
            ++G+VL+DP+A+IG  C    XXXXXXXXX+EDGA I R T+L GARV +H+ + S IIGW   VGRW R+ENVSVLGEDVTVKDE+ +NG  ILPHK I +SV  P  I+
Sbjct:   34 IVGNVLVDPTAKIGRNCRXXXXXXXXXXXXIEDGACIKRCTILRGARVRSHSWLESCIIGWRCVVGRWVRMENVSVLGEDVTVKDELYINGGRILPHKSISDSVPEPQIIM 144          
BLAST of mRNA_M-pyrifera_M_contig92915.21486.1 vs. uniprot
Match: Q4RLI1_TETNG ((spotted green pufferfish) hypothetical protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4RLI1_TETNG)

HSP 1 Score: 125 bits (313), Expect = 4.050e-32
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 1
Query:    1 PSVPEVQVSRGAST---VIGSVLIDPSARIGAGCVLGPXXXXXXXXXVEDGARIVRSTVLGGARVCAHALVSSSIIGWASTVGRWCRVENVSVLGEDVTVKDEICLNGAAILPHKGIKESVYTPGTIV 375
            PSVP    SR   T    +G+VL+DP+A+IG  C    XXXXXXXX VEDG RI R TVL G+RV  H+ + S I+GW+S+VG+W R+ENVSVLGEDV V DE+ LNGA++LPHK I ESV  P  I+
Sbjct:  223 PSVPAPTCSREVRTGPGFLGNVLVDPTAKIGQNCTXXXXXXXXXXXVVEDGVRIKRCTVLKGSRVRCHSWLESCIVGWSSSVGQWVRMENVSVLGEDVIVNDELYLNGASVLPHKSINESVPEPRIIM 350          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92915.21486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C1D40C76.650e-3451.33mannose-1-phosphate guanylyltransferase 1-like n=1... [more]
A0A3P6BU38_BRAOL3.410e-3352.78Mannose-1-phosphate guanylyltransferase n=1 Tax=Br... [more]
A0A078G1Q2_BRANA6.350e-3354.63Mannose-1-phosphate guanylyltransferase n=47 Tax=M... [more]
A0A484EHA7_BRELC8.760e-3354.87Mannose-1-phosphate guanylyltransferase n=1 Tax=Br... [more]
H3GA81_PHYRM1.720e-3260.53Mannose-1-phosphate guanylyltransferase n=22 Tax=O... [more]
A0A7S0G5G3_9RHOD2.020e-3252.03Mannose-1-phosphate guanylyltransferase n=4 Tax=Rh... [more]
A0A0A9MMZ9_ARUDO2.140e-3252.25NTP_transferase domain-containing protein n=2 Tax=... [more]
A0A0A9F6Y0_ARUDO2.180e-3255.86GSVIVT00018410001 n=1 Tax=Arundo donax TaxID=35708... [more]
K1QGL9_CRAGI3.580e-3261.26Mannose-1-phosphate guanyltransferase beta n=1 Tax... [more]
Q4RLI1_TETNG4.050e-3257.81(spotted green pufferfish) hypothetical protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92915contigM-pyrifera_M_contig92915:83..463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score130.2
Seed ortholog evalue6.9e-28
Seed eggNOG ortholog3711.Bra005014.1-P
KEGG rclassRC00002
KEGG koko:K00966
KEGG ReactionR00885
KEGG Pathwayko00051,ko00520,ko01100,ko01110,map00051,map00520,map01100,map01110
KEGG ModuleM00114,M00361,M00362
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0004475,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005996,GO:0006073,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006950,GO:0006952,GO:0006970,GO:0006979,GO:0008150,GO:0008152,GO:0008905,GO:0009058,GO:0009059,GO:0009108,GO:0009110,GO:0009250,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009753,GO:0009987,GO:0010033,GO:0010035,GO:0010193,GO:0016051,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0019752,GO:0019852,GO:0019853,GO:0030243,GO:0030244,GO:0033692,GO:0034637,GO:0034645,GO:0042221,GO:0042364,GO:0042493,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046394,GO:0046677,GO:0050896,GO:0051186,GO:0051188,GO:0051273,GO:0051274,GO:0051704,GO:0051707,GO:0060359,GO:0070568,GO:0071704,GO:0098542,GO:1901576,GO:1901698,GO:1901700
EggNOG free text desc.Mannose-1-phosphate guanylyltransferase
EggNOG OGs37NVZ@33090,3GF72@35493,3HP8G@3699,COG1208@1,KOG1322@2759
EC2.7.7.13
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.408708-CDS-M-pyrifera_M_contig92915:82..4631622816842.408708-CDS-M-pyrifera_M_contig92915:82..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92915 83..463 +
1692278210.6998916-CDS-M-pyrifera_M_contig92915:82..4631692278210.6998916-CDS-M-pyrifera_M_contig92915:82..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92915 83..463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92915.21486.1prot_M-pyrifera_M_contig92915.21486.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92915 83..463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92915.21486.1

>prot_M-pyrifera_M_contig92915.21486.1 ID=prot_M-pyrifera_M_contig92915.21486.1|Name=mRNA_M-pyrifera_M_contig92915.21486.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
PSVPEVQVSRGASTVIGSVLIDPSARIGAGCVLGPDVVIGPGCVVEDGAR
IVRSTVLGGARVCAHALVSSSIIGWASTVGRWCRVENVSVLGEDVTVKDE
ICLNGAAILPHKGIKESVYTPGTIVM*
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mRNA from alignment at M-pyrifera_M_contig92915:83..463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92915.21486.1 ID=mRNA_M-pyrifera_M_contig92915.21486.1|Name=mRNA_M-pyrifera_M_contig92915.21486.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig92915:83..463+ (Macrocystis pyrifera P11B4 male)
CCTTCTGTGCCTGAGGTGCAGGTGAGCAGAGGCGCGTCTACTGTGATTGG CAGCGTTCTCATCGACCCCAGCGCTCGCATTGGAGCCGGCTGTGTGTTAG GTCCCGATGTGGTGATTGGTCCCGGGTGCGTGGTTGAAGATGGTGCTCGT ATCGTGAGGTCCACCGTTCTTGGGGGTGCTCGCGTCTGCGCCCACGCCCT CGTGTCCTCCTCCATCATCGGATGGGCATCCACCGTTGGCAGGTGGTGCC GCGTCGAAAACGTGTCTGTGCTCGGGGAAGACGTCACCGTCAAGGACGAA ATCTGCCTCAACGGAGCAGCCATCCTCCCGCACAAGGGAATCAAGGAGTC TGTCTACACCCCAGGAACCATCGTCATGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92915:83..463+

>mRNA_M-pyrifera_M_contig92915.21486.1 ID=mRNA_M-pyrifera_M_contig92915.21486.1|Name=mRNA_M-pyrifera_M_contig92915.21486.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig92915:83..463+ (Macrocystis pyrifera P11B4 male)
CCTTCTGTGCCTGAGGTGCAGGTGAGCAGAGGCGCGTCTACTGTGATTGG
CAGCGTTCTCATCGACCCCAGCGCTCGCATTGGAGCCGGCTGTGTGTTAG
GTCCCGATGTGGTGATTGGTCCCGGGTGCGTGGTTGAAGATGGTGCTCGT
ATCGTGAGGTCCACCGTTCTTGGGGGTGCTCGCGTCTGCGCCCACGCCCT
CGTGTCCTCCTCCATCATCGGATGGGCATCCACCGTTGGCAGGTGGTGCC
GCGTCGAAAACGTGTCTGTGCTCGGGGAAGACGTCACCGTCAAGGACGAA
ATCTGCCTCAACGGAGCAGCCATCCTCCCGCACAAGGGAATCAAGGAGTC
TGTCTACACCCCAGGAACCATCGTCATGTAGCCTTCTGTGCCTGAGGTGC
AGGTGAGCAGAGGCGCGTCTACTGTGATTGGCAGCGTTCTCATCGACCCC
AGCGCTCGCATTGGAGCCGGCTGTGTGTTAGGTCCCGATGTGGTGATTGG
TCCCGGGTGCGTGGTTGAAGATGGTGCTCGTATCGTGAGGTCCACCGTTC
TTGGGGGTGCTCGCGTCTGCGCCCACGCCCTCGTGTCCTCCTCCATCATC
GGATGGGCATCCACCGTTGGCAGGTGGTGCCGCGTCGAAAACGTGTCTGT
GCTCGGGGAAGACGTCACCGTCAAGGACGAAATCTGCCTCAACGGAGCAG
CCATCCTCCCGCACAAGGGAATCAAGGAGTCTGTCTACACCCCAGGAACC
ATCGTCATGTAG
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