mRNA_M-pyrifera_M_contig92911.21484.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92911.21484.1
Unique NamemRNA_M-pyrifera_M_contig92911.21484.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92911.21484.1 vs. uniprot
Match: A0A3N4IWW6_ASCIM (Uncharacterized protein n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4IWW6_ASCIM)

HSP 1 Score: 89.7 bits (221), Expect = 2.370e-18
Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   52 LRMLCNTLRWRVLAPTCPDTLAAYPFAGSDPFVVEDGESPHVLFAGCQREFGVEERAVGG----ATVVTVPSFCKTRQAVLLDLSSLSATTITF 321
            L +L  TLRWR +APTCPDTL  YPF   DPF +E  ESPHV FAG Q  FG  E  VG      T++ +PSF +T+Q V LDL ++ AT + F
Sbjct:  380 LDLLERTLRWRCVAPTCPDTLWTYPFNDRDPFTIE--ESPHVYFAGNQPSFGTRE-VVGPNGEKTTIIMLPSFAETKQVVRLDLETMQATPLRF 470          
BLAST of mRNA_M-pyrifera_M_contig92911.21484.1 vs. uniprot
Match: A0A2P6TSX7_CHLSO (DNA polymerase delta small subunit n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TSX7_CHLSO)

HSP 1 Score: 85.5 bits (210), Expect = 7.470e-17
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   58 MLCNTLRWRVLAPTCPDTLAAYPFAGSDPFVVEDGESPHVLFAGCQREF--GVEERAVGGAT-VVTVPSFCKTRQAVLLDLSSLSATTITF 321
            +L   L+WR LAPT PDTLAAYP+  SDPF++E   SPHVLFAG Q  F  GV E A GG+  +V +P+FC T   VLL+LS+L+   I F
Sbjct:  371 ILGKLLQWRHLAPTAPDTLAAYPYYESDPFILES--SPHVLFAGGQPAFATGVAEVAGGGSVRLVAIPNFCSTGCVVLLNLSTLACQPIYF 459          
BLAST of mRNA_M-pyrifera_M_contig92911.21484.1 vs. uniprot
Match: E1ZH34_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZH34_CHLVA)

HSP 1 Score: 83.6 bits (205), Expect = 3.620e-16
Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   58 MLCNTLRWRVLAPTCPDTLAAYPFAGSDPFVVEDGESPHVLFAGCQREFG---VEERAVGGAT-VVTVPSFCKTRQAVLLDLSSLSATTITF 321
            +L   LRWR LAPT PDTLAAYP+  +DPF++    +PHVLFAG Q +FG   VEE A G A  VV VP+FC T   VL++L++L    I F
Sbjct:  374 ILEKLLRWRHLAPTAPDTLAAYPYFNNDPFILRS--TPHVLFAGGQPQFGTALVEEEAGGAACRVVAVPNFCTTGCVVLVNLATLYCQPIYF 463          
BLAST of mRNA_M-pyrifera_M_contig92911.21484.1 vs. uniprot
Match: A0A7R9Y024_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y024_9VIRI)

HSP 1 Score: 82.0 bits (201), Expect = 1.280e-15
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   52 LRMLCNTLRWRVLAPTCPDTLAAYPFAGSDPFVVEDGESPHVLFAGCQREFGVEERAVGGATVVTVPSFCKTRQAVLLDLSSL 300
            L +L  TLRWR LAPT PD+LA+YP++  DPFVV+D  SPHV FAG QR+F  + + V G  +V VP F  T Q VL++  +L
Sbjct:  373 LELLEATLRWRHLAPTAPDSLASYPYSDEDPFVVQD--SPHVYFAGNQRQF--DTKLVEGVRLVCVPDFATTGQIVLVNTHTL 451          
BLAST of mRNA_M-pyrifera_M_contig92911.21484.1 vs. uniprot
Match: UPI00053F81EA (DNA polymerase delta small subunit isoform X1 n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F81EA)

HSP 1 Score: 79.7 bits (195), Expect = 7.850e-15
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   52 LRMLCNTLRWRVLAPTCPDTLAAYPFAGSDPFVVEDGESPHVLFAGCQREFGVEERAVGG-----ATVVTVPSFCKTRQAVLLDLSSLSATTITFGT 327
            L  +  TLRWR LAPT P+TL  YPF   DPFV+E    PHV F G Q  +  E R + G     A +VT+P FC T  AV+L+L +L   T++FGT
Sbjct:  343 LEFVERTLRWRHLAPTAPNTLGCYPFTDRDPFVLES--CPHVYFVGNQDVY--ESRLLKGSEGQMARIVTIPKFCDTGVAVVLNLRNLECHTLSFGT 435          
BLAST of mRNA_M-pyrifera_M_contig92911.21484.1 vs. uniprot
Match: A0A059A347_EUCGR (Uncharacterized protein n=9 Tax=Myrtoideae TaxID=1699513 RepID=A0A059A347_EUCGR)

HSP 1 Score: 79.7 bits (195), Expect = 7.870e-15
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   52 LRMLCNTLRWRVLAPTCPDTLAAYPFAGSDPFVVEDGESPHVLFAGCQREFGVEERAVGGAT-----VVTVPSFCKTRQAVLLDLSSLSATTITFGT 327
            L  +  TLRWR LAPT P+TL  YPFA  DPF++E    PHV F G Q ++  E + + G+      ++++P FC+T  AV+L+L +L   T+TFGT
Sbjct:  346 LEFMERTLRWRHLAPTAPNTLGCYPFADRDPFLIES--CPHVYFVGNQDKY--ETQMLKGSEGQLVRLISIPKFCETGTAVVLNLKNLECHTLTFGT 438          
BLAST of mRNA_M-pyrifera_M_contig92911.21484.1 vs. uniprot
Match: A0A060T813_BLAAD (ARAD1B24398p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T813_BLAAD)

HSP 1 Score: 79.0 bits (193), Expect = 1.560e-14
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   52 LRMLCNTLRWRVLAPTCPDTLAAYPFAGSDPFVVEDGESPHVLFAGCQREFG---VEERAVGGATVVTVPSFCKTRQAVLLDLSSL 300
            L M+ +TLRW+  APT PDTL +YPF+  DPF+V   E+PH+ FAG Q+E+    +EE+ V    +VTVP F K+ Q VL+DL +L
Sbjct:  381 LAMMESTLRWQHAAPTAPDTLWSYPFSDKDPFIVS--ETPHIYFAGNQKEYSTRIIEEQGVE-VRLVTVPEFYKSGQFVLVDLETL 463          
BLAST of mRNA_M-pyrifera_M_contig92911.21484.1 vs. uniprot
Match: A0A2R5G712_9STRA (DNA polymerase delta subunit 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G712_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.600e-14
Identity = 53/109 (48.62%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   46 AGLRMLCNTLRWRVLAPTCPDTLAAYPFAGSDPFVVEDGESPHVLFAGCQREFGVEERAV----GGAT-VVTVPSFCKTRQAVLLDLSS--LSATTITFGTPPTQRSGE 351
            +GL ++  TL+WR +APT PDTLA YP    DPFV++  E PH+ F G Q  F  E+R V    GG T VV+VP F  T Q VL+DLSS  L  TTI F        GE
Sbjct:  388 SGLDLMEETLQWRHIAPTAPDTLACYPLTTVDPFVMQ--ERPHLYFCGNQPAF--EDRLVHSLHGGFTRVVSVPEFATTGQVVLVDLSSEYLDCTTIQFDGLDDDNDGE 492          
BLAST of mRNA_M-pyrifera_M_contig92911.21484.1 vs. uniprot
Match: UPI000874B08E (DNA polymerase delta small subunit n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000874B08E)

HSP 1 Score: 78.6 bits (192), Expect = 1.990e-14
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   52 LRMLCNTLRWRVLAPTCPDTLAAYPFAGSDPFVVEDGESPHVLFAGCQREFGVEERAVGGAT-----VVTVPSFCKTRQAVLLDLSSLSATTITFGT 327
            L  L N L+W  +APT PDTL  +P+   DPF+++D   PHV F G Q EFG   R   G       ++++P FC T QAV+L+L +L   T+ F T
Sbjct:  339 LEALENCLQWNHIAPTAPDTLGCFPYYNKDPFILDD--CPHVFFVGNQAEFGT--RMASGENGQKVRLISIPEFCNTFQAVILNLKTLDCNTVIFDT 431          
BLAST of mRNA_M-pyrifera_M_contig92911.21484.1 vs. uniprot
Match: L1JIW9_GUITC (DNA polymerase delta small subunit n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JIW9_GUITC)

HSP 1 Score: 78.6 bits (192), Expect = 2.090e-14
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   52 LRMLCNTLRWRVLAPTCPDTLAAYPFAGSDPFVVEDGESPHVLFAGCQREFGVEERAVGG-----ATVVTVPSFCKTRQAVLLDLSSLSATTITFGT 327
            L ++ N L+WR LAPT PDTL  +P    DPF++     PH+ FAG Q+ FG   R + G     + +V+VPSF +T+ AV +D+ +L+AT I+FGT
Sbjct:  360 LDVMQNLLQWRHLAPTAPDTLPCFPVKDEDPFILP--HCPHIFFAGNQKTFG--SRTIDGEKGQKSLLVSVPSFSRTKTAVEVDVRTLTATPISFGT 452          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92911.21484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N4IWW6_ASCIM2.370e-1852.13Uncharacterized protein n=1 Tax=Ascobolus immersus... [more]
A0A2P6TSX7_CHLSO7.470e-1754.95DNA polymerase delta small subunit n=1 Tax=Chlorel... [more]
E1ZH34_CHLVA3.620e-1653.26Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7R9Y024_9VIRI1.280e-1553.01Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
UPI00053F81EA7.850e-1547.42DNA polymerase delta small subunit isoform X1 n=3 ... [more]
A0A059A347_EUCGR7.870e-1544.33Uncharacterized protein n=9 Tax=Myrtoideae TaxID=1... [more]
A0A060T813_BLAAD1.560e-1450.00ARAD1B24398p n=1 Tax=Blastobotrys adeninivorans Ta... [more]
A0A2R5G712_9STRA1.600e-1448.62DNA polymerase delta subunit 2 n=1 Tax=Hondaea fer... [more]
UPI000874B08E1.990e-1442.27DNA polymerase delta small subunit n=1 Tax=Anoplop... [more]
L1JIW9_GUITC2.090e-1444.33DNA polymerase delta small subunit n=2 Tax=Guillar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92911contigM-pyrifera_M_contig92911:172..570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.9
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog554065.XP_005847151.1
Preferred namePOLD2
KEGG rclassRC02795
KEGG koko:K02328
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00262
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0022616,GO:0030894,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGs34J57@3041,37SHS@33090,COG1311@1,KOG2732@2759
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.3400364-CDS-M-pyrifera_M_contig92911:171..5701622816842.3400364-CDS-M-pyrifera_M_contig92911:171..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92911 172..570 -
1692278210.6690478-CDS-M-pyrifera_M_contig92911:171..5701692278210.6690478-CDS-M-pyrifera_M_contig92911:171..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92911 172..570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92911.21484.1prot_M-pyrifera_M_contig92911.21484.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92911 172..570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92911.21484.1

>prot_M-pyrifera_M_contig92911.21484.1 ID=prot_M-pyrifera_M_contig92911.21484.1|Name=mRNA_M-pyrifera_M_contig92911.21484.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
SSSSSSSSSSPPFSSAGLRMLCNTLRWRVLAPTCPDTLAAYPFAGSDPFV
VEDGESPHVLFAGCQREFGVEERAVGGATVVTVPSFCKTRQAVLLDLSSL
SATTITFGTPPTQRSGEGEGQGLVTEEDDRKQQ
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mRNA from alignment at M-pyrifera_M_contig92911:172..570-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92911.21484.1 ID=mRNA_M-pyrifera_M_contig92911.21484.1|Name=mRNA_M-pyrifera_M_contig92911.21484.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig92911:172..570- (Macrocystis pyrifera P11B4 male)
TCCTCCTCCTCCTCCTCCTCCTCCTCATCACCACCATTTTCTTCTGCTGG TTTGCGTATGCTGTGCAATACCCTCCGTTGGCGCGTGTTAGCGCCCACCT GTCCTGACACTCTGGCTGCATACCCTTTTGCGGGGAGTGATCCGTTTGTG GTGGAGGATGGGGAGAGTCCTCACGTGTTATTCGCGGGTTGCCAGAGGGA GTTTGGGGTGGAGGAGAGGGCGGTGGGTGGTGCGACCGTGGTAACGGTGC CTTCCTTCTGCAAGACGAGGCAGGCGGTGTTACTGGACCTCTCCTCCCTC TCAGCCACCACCATCACCTTCGGAACGCCACCAACCCAACGAAGTGGAGA GGGAGAAGGCCAAGGACTCGTCACCGAAGAAGACGACAGGAAGCAACAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92911:172..570-

>mRNA_M-pyrifera_M_contig92911.21484.1 ID=mRNA_M-pyrifera_M_contig92911.21484.1|Name=mRNA_M-pyrifera_M_contig92911.21484.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig92911:172..570- (Macrocystis pyrifera P11B4 male)
TCCTCCTCCTCCTCCTCCTCCTCCTCATCACCACCATTTTCTTCTGCTGG
TTTGCGTATGCTGTGCAATACCCTCCGTTGGCGCGTGTTAGCGCCCACCT
GTCCTGACACTCTGGCTGCATACCCTTTTGCGGGGAGTGATCCGTTTGTG
GTGGAGGATGGGGAGAGTCCTCACGTGTTATTCGCGGGTTGCCAGAGGGA
GTTTGGGGTGGAGGAGAGGGCGGTGGGTGGTGCGACCGTGGTAACGGTGC
CTTCCTTCTGCAAGACGAGGCAGGCGGTGTTACTGGACCTCTCCTCCCTC
TCAGCCACCACCATCACCTTCGGAACGCCACCAACCCAACGAAGTGGAGA
GGGAGAAGGCCAAGGACTCGTCACCGAAGAAGACGACAGGAAGCAACAGT
CCTCCTCCTCCTCCTCCTCCTCCTCATCACCACCATTTTCTTCTGCTGGT
TTGCGTATGCTGTGCAATACCCTCCGTTGGCGCGTGTTAGCGCCCACCTG
TCCTGACACTCTGGCTGCATACCCTTTTGCGGGGAGTGATCCGTTTGTGG
TGGAGGATGGGGAGAGTCCTCACGTGTTATTCGCGGGTTGCCAGAGGGAG
TTTGGGGTGGAGGAGAGGGCGGTGGGTGGTGCGACCGTGGTAACGGTGCC
TTCCTTCTGCAAGACGAGGCAGGCGGTGTTACTGGACCTCTCCTCCCTCT
CAGCCACCACCATCACCTTCGGAACGCCACCAACCCAACGAAGTGGAGAG
GGAGAAGGCCAAGGACTCGTCACCGAAGAAGACGACAGGAAGCAACAG
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