mRNA_M-pyrifera_M_contig92904.21483.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92904.21483.1
Unique NamemRNA_M-pyrifera_M_contig92904.21483.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92904.21483.1 vs. uniprot
Match: L8H8X5_ACACA (Dual specificity phosphatase, catalytic domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8X5_ACACA)

HSP 1 Score: 176 bits (446), Expect = 1.450e-48
Identity = 81/144 (56.25%), Postives = 105/144 (72.92%), Query Frame = 1
Query:   25 KFDQICSQITESLYLGSDTVARDSRELRRNKITHILNCAGGYCGNYFPQQFEYMTLHLLDGKSENIACLFYEVLEYIDDAISNGGRVYVHCQQGVSRSSAMLILYLMWKMHKPFNETHEYVKKLRQASSPNAGFISQLMEWWKR 456
            K+D ICS+IT+ LYLGS TV++D   L++  +THILNCAG  C  Y P  F Y TL+LLDG  E+I C+ Y+++E++D+ I++ G++ VHCQQGVSRSSAM+I YLMWK    F  TH YVK+ R  SSPN GFI QL+E  KR
Sbjct:  528 KYDSICSKITDQLYLGSQTVSQDKAMLKQQGVTHILNCAGSICPIYHPNDFTYRTLYLLDGVREDITCMLYDIIEWMDNVITSNGKILVHCQQGVSRSSAMMIGYLMWKHGWGFERTHMYVKERRGVSSPNTGFICQLLELAKR 671          
BLAST of mRNA_M-pyrifera_M_contig92904.21483.1 vs. uniprot
Match: D3B5V5_POLPP (MAP kinase phosphatase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B5V5_POLPP)

HSP 1 Score: 173 bits (438), Expect = 3.740e-47
Identity = 82/150 (54.67%), Postives = 105/150 (70.00%), Query Frame = 1
Query:    4 GGASMAKKFDQICSQITESLYLGSDTVARDSRELRRNKITHILNCAGGYCGNYFPQQFEYMTLHLLDGKSENIACLFYEVLEYIDDAISNGGRVYVHCQQGVSRSSAMLILYLMWKMHKPFNETHEYVKKLRQASSPNAGFISQLMEWWK 453
            G   + + F+ I S+IT+SL+LGS   + +  EL++N ITHILNCAG  C N+FPQQF Y TL + DG  E+I CLFYEVL++I DAI NGG+VY+HC QG+SRSSA ++LYLM+K    F    +Y K+ R  SSPN GF  QLM W K
Sbjct:  777 GTRDLVQYFEPILSRITDSLFLGSRIPSANLTELKQNGITHILNCAGMVCVNHFPQQFNYKTLFISDGNGEDITCLFYEVLDFIQDAIDNGGKVYIHCYQGISRSSAYVLLYLMYKYDWDFKTALDYTKEKRFISSPNPGFTGQLMHWKK 926          
BLAST of mRNA_M-pyrifera_M_contig92904.21483.1 vs. uniprot
Match: D2UXH5_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UXH5_NAEGR)

HSP 1 Score: 157 bits (396), Expect = 2.760e-46
Identity = 75/150 (50.00%), Postives = 98/150 (65.33%), Query Frame = 1
Query:    1 MGGASMAKKFDQICSQITESLYLGSDTVARDSRELRRNKITHILNCAGG-YCGNYFPQQFEYMTLHLLDGKSENIACLFYEVLEYIDDAISNGGRVYVHCQQGVSRSSAMLILYLMWKMHKPFNETHEYVKKLRQASSPNAGFISQLMEW 447
            M G  +AK    +CS+IT+ L+LGS  VA+D ++L  N ITHI+N A   YC NYFP  F Y +L L D  +E+I   FY V+E+I++AI  GG++YVHCQ GVSRS  + I Y+MWK    FN+  E VK  R   SPNAGF+ QL +W
Sbjct:    1 MSGRELAKACHYVCSKITDFLFLGSAAVAQDKKKLNDNGITHIINAAASVYCDNYFPNDFTYYSLSLYDDPNESIIGSFYGVIEFIENAIKKGGKIYVHCQMGVSRSCCLCISYMMWKYRMNFNQALEDVKTKRACCSPNAGFLVQLTQW 150          
BLAST of mRNA_M-pyrifera_M_contig92904.21483.1 vs. uniprot
Match: A0A151Z8L7_9MYCE (MAP kinase phosphatase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z8L7_9MYCE)

HSP 1 Score: 167 bits (424), Expect = 2.690e-45
Identity = 75/142 (52.82%), Postives = 102/142 (71.83%), Query Frame = 1
Query:   28 FDQICSQITESLYLGSDTVARDSRELRRNKITHILNCAGGYCGNYFPQQFEYMTLHLLDGKSENIACLFYEVLEYIDDAISNGGRVYVHCQQGVSRSSAMLILYLMWKMHKPFNETHEYVKKLRQASSPNAGFISQLMEWWK 453
            F+ I +QITE ++LGS   A + + L+ N ITHI+NCAG  C N+FPQ F Y TL++ DG  E+I CLFYEV+++I++AI   G+VY+HC QG+SRSSA +ILY+MWK    F + HEY K++R  S+PN GF  QL+ W K
Sbjct:  688 FEPILNQITEDIFLGSRIPAANLKLLKDNGITHIVNCAGMVCNNHFPQDFTYKTLYISDGIQEDIWCLFYEVIDFIEEAIEQAGKVYIHCHQGISRSSAFVILYIMWKHDWNFQKAHEYTKEIRYISNPNPGFTGQLIVWRK 829          
BLAST of mRNA_M-pyrifera_M_contig92904.21483.1 vs. uniprot
Match: R1EWH7_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EWH7_EMIHU)

HSP 1 Score: 156 bits (395), Expect = 3.350e-45
Identity = 75/140 (53.57%), Postives = 96/140 (68.57%), Query Frame = 1
Query:   22 KKFDQICSQITESLYLGSDTVARDSRELRRNKITHILNCAGGYCGNYFPQQFEYMTLHLLDGKSENIACLFYEVLEYIDDAISNGGRVYVHCQQGVSRSSAMLILYLMWKMHKPFNETHEYVKKLRQASSPNAGFISQLM 441
            ++FD +CSQI E L+LGS+TVA D R L  N +TH+LN AG  C +Y P    Y TLHL D   E+I+ L YE +EYID +I  GGRV+VHC QGVSRSS+M+I YLMW+   PFN+     K  R  +SPN+GFI+ L+
Sbjct:   32 RRFDVVCSQIEERLFLGSNTVASDLRLLLSNGVTHVLNTAGVACPDYHPGALTYKTLHLYDSPREDISTLLYEAIEYIDASIEAGGRVFVHCHQGVSRSSSMVIAYLMWRHRLPFNDAFARCKAGRGVTSPNSGFIAALL 171          
BLAST of mRNA_M-pyrifera_M_contig92904.21483.1 vs. uniprot
Match: F4PWD8_CAVFA (MAP kinase phosphatase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PWD8_CAVFA)

HSP 1 Score: 164 bits (415), Expect = 4.660e-44
Identity = 74/142 (52.11%), Postives = 102/142 (71.83%), Query Frame = 1
Query:   28 FDQICSQITESLYLGSDTVARDSRELRRNKITHILNCAGGYCGNYFPQQFEYMTLHLLDGKSENIACLFYEVLEYIDDAISNGGRVYVHCQQGVSRSSAMLILYLMWKMHKPFNETHEYVKKLRQASSPNAGFISQLMEWWK 453
            +D I ++ITE LYLGS   A +S+ L+ N ++HILNCAG  C N+FP++F Y TL++ DG  E+I C FYEVL++I DAI  GG+V++HC QG+SRSSA +IL+LM+K +  FN   +Y K+ R  S+PN GF  QL+ W K
Sbjct:  773 YDPILNKITEHLYLGSRIPASNSKVLKENGVSHILNCAGMVCTNHFPEEFVYKTLYISDGNGEDITCFFYEVLDFIQDAIDRGGKVFIHCHQGISRSSAFVILHLMYKNNWEFNYAFDYTKERRAISNPNPGFTGQLLLWRK 914          
BLAST of mRNA_M-pyrifera_M_contig92904.21483.1 vs. uniprot
Match: UPI000644990C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644990C)

HSP 1 Score: 163 bits (413), Expect = 8.180e-44
Identity = 76/142 (53.52%), Postives = 98/142 (69.01%), Query Frame = 1
Query:   28 FDQICSQITESLYLGSDTVARDSRELRRNKITHILNCAGGYCGNYFPQQFEYMTLHLLDGKSENIACLFYEVLEYIDDAISNGGRVYVHCQQGVSRSSAMLILYLMWKMHKPFNETHEYVKKLRQASSPNAGFISQLMEWWK 453
            F+ + S+IT+++YLGS   A +S+ L+   ITH+LNCAG  C N+FP  F Y TL + DG  E+I CLFYEVL++++DAI  GGRVYVHC QG+SRSSA +IL LM K    F   HE+ K+ R  S+PN GF  QLM W K
Sbjct:  551 FEPVLSKITDTIYLGSRIPAANSKLLKETGITHVLNCAGMVCTNHFPADFVYKTLFISDGNGEDITCLFYEVLDFVEDAIERGGRVYVHCHQGISRSSAFVILCLMHKYDWDFKAAHEFTKERRYISNPNPGFTGQLMYWKK 692          
BLAST of mRNA_M-pyrifera_M_contig92904.21483.1 vs. uniprot
Match: A0A7S3TQ20_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TQ20_EMIHU)

HSP 1 Score: 156 bits (395), Expect = 1.330e-43
Identity = 75/140 (53.57%), Postives = 96/140 (68.57%), Query Frame = 1
Query:   22 KKFDQICSQITESLYLGSDTVARDSRELRRNKITHILNCAGGYCGNYFPQQFEYMTLHLLDGKSENIACLFYEVLEYIDDAISNGGRVYVHCQQGVSRSSAMLILYLMWKMHKPFNETHEYVKKLRQASSPNAGFISQLM 441
            ++FD +CSQI E L+LGS+TVA D R L  N +TH+LN AG  C +Y P    Y TLHL D   E+I+ L YE +EYID +I  GGRV+VHC QGVSRSS+M+I YLMW+   PFN+     K  R  +SPN+GFI+ L+
Sbjct:   33 RRFDVVCSQIEERLFLGSNTVASDLRLLLSNGVTHVLNTAGVACPDYHPGALTYKTLHLYDSPREDISTLLYEAIEYIDASIEAGGRVFVHCHQGVSRSSSMVIAYLMWRHRLPFNDAFARCKAGRGVTSPNSGFIAALL 172          
BLAST of mRNA_M-pyrifera_M_contig92904.21483.1 vs. uniprot
Match: F2E2U0_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E2U0_HORVV)

HSP 1 Score: 160 bits (405), Expect = 1.520e-43
Identity = 74/148 (50.00%), Postives = 99/148 (66.89%), Query Frame = 1
Query:   13 SMAKKFDQICSQITESLYLGSDTVARDSRELRRNKITHILNCAGGYCGNYFPQQFEYMTLHLLDGKSENIACLFYEVLEYIDDAISNGGRVYVHCQQGVSRSSAMLILYLMWKMHKPFNETHEYVKKLRQASSPNAGFISQLMEWWKR 456
            ++ + F  ICS+I + LYLGS  VA     L +  ITHILNCAG  C   FP  + Y  L+L DG ++++A LFYEVL++I+ A    G V+VHC++G+SRSS M I YLMWK +K F  THE VKK+R  +SPN  F +QL+ WW+R
Sbjct:  335 ALQRYFLPICSKINDFLYLGSRMVAESKPSLEKEGITHILNCAGTVCSPAFPGDYAYRVLYLADGPNQDMASLFYEVLDWIEAARQKNGHVFVHCEKGISRSSTMAICYLMWKNNKGFYPTHEEVKKIRDVASPNPNFTTQLLAWWER 482          
BLAST of mRNA_M-pyrifera_M_contig92904.21483.1 vs. uniprot
Match: D8UBV1_VOLCA (MAP kinase phosphatase 1 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UBV1_VOLCA)

HSP 1 Score: 151 bits (382), Expect = 1.740e-42
Identity = 64/143 (44.76%), Postives = 97/143 (67.83%), Query Frame = 1
Query:   28 FDQICSQITESLYLGSDTVARDSRELRRNKITHILNCAGGYCGNYFPQQFEYMTLHLLDGKSENIACLFYEVLEYIDDAISNGGRVYVHCQQGVSRSSAMLILYLMWKMHKPFNETHEYVKKLRQASSPNAGFISQLMEWWKR 456
            F++ CS+++  L+L  D VA++   LR+  +TH+LNC G  C  YF  +  Y TL+L D  +E+I C+ Y+ L+YID A+ +GGR+ VHC QGVSRS+ ++I Y+MW+  KP++E    VK +R  ++PN GF  QL++W KR
Sbjct:   50 FEKHCSEVSAGLFLSGDYVAKNRETLRQAGVTHVLNCVGFICKEYFKDELTYKTLYLQDTPAEDILCVLYDCLDYIDSALHSGGRILVHCSQGVSRSATLVIAYIMWRSGKPYDEVFAAVKAVRGVANPNIGFTCQLLQWQKR 192          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92904.21483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H8X5_ACACA1.450e-4856.25Dual specificity phosphatase, catalytic domain con... [more]
D3B5V5_POLPP3.740e-4754.67MAP kinase phosphatase n=1 Tax=Polysphondylium pal... [more]
D2UXH5_NAEGR2.760e-4650.00Predicted protein (Fragment) n=1 Tax=Naegleria gru... [more]
A0A151Z8L7_9MYCE2.690e-4552.82MAP kinase phosphatase n=1 Tax=Tieghemostelium lac... [more]
R1EWH7_EMIHU3.350e-4553.57Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
F4PWD8_CAVFA4.660e-4452.11MAP kinase phosphatase n=1 Tax=Cavenderia fascicul... [more]
UPI000644990C8.180e-4453.52hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7S3TQ20_EMIHU1.330e-4353.57Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
F2E2U0_HORVV1.520e-4350.00Predicted protein n=1 Tax=Hordeum vulgare subsp. v... [more]
D8UBV1_VOLCA1.740e-4244.76MAP kinase phosphatase 1 n=1 Tax=Volvox carteri f.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92904contigM-pyrifera_M_contig92904:252..760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue2.8e-36
Seed eggNOG ortholog5786.XP_003288176.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Dual specificity phosphatase, catalytic domain
EggNOG OGs3XCRG@554915,COG2453@1,KOG1716@2759
COG Functional cat.V
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size456
Cds size456
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.2913547-CDS-M-pyrifera_M_contig92904:251..5391622816842.2913547-CDS-M-pyrifera_M_contig92904:251..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92904 252..539 +
1692278210.6343634-CDS-M-pyrifera_M_contig92904:251..5391692278210.6343634-CDS-M-pyrifera_M_contig92904:251..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92904 252..539 +
1622816842.3039484-CDS-M-pyrifera_M_contig92904:592..7601622816842.3039484-CDS-M-pyrifera_M_contig92904:592..760Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92904 593..760 +
1692278210.6542702-CDS-M-pyrifera_M_contig92904:592..7601692278210.6542702-CDS-M-pyrifera_M_contig92904:592..760Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92904 593..760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92904.21483.1prot_M-pyrifera_M_contig92904.21483.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92904 252..760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92904.21483.1

>prot_M-pyrifera_M_contig92904.21483.1 ID=prot_M-pyrifera_M_contig92904.21483.1|Name=mRNA_M-pyrifera_M_contig92904.21483.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
MGGASMAKKFDQICSQITESLYLGSDTVARDSRELRRNKITHILNCAGGY
CGNYFPQQFEYMTLHLLDGKSENIACLFYEVLEYIDDAISNGGRVYVHCQ
QGVSRSSAMLILYLMWKMHKPFNETHEYVKKLRQASSPNAGFISQLMEWW
KR
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mRNA from alignment at M-pyrifera_M_contig92904:252..760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92904.21483.1 ID=mRNA_M-pyrifera_M_contig92904.21483.1|Name=mRNA_M-pyrifera_M_contig92904.21483.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=509bp|location=Sequence derived from alignment at M-pyrifera_M_contig92904:252..760+ (Macrocystis pyrifera P11B4 male)
ATGGGAGGAGCCTCAATGGCCAAGAAGTTCGACCAGATCTGCTCCCAGAT CACCGAGTCTCTCTACTTGGGAAGCGACACCGTCGCTCGGGACAGCAGAG AACTCCGGCGAAACAAGATCACCCACATCCTGAATTGTGCTGGAGGCTAC TGCGGCAACTACTTTCCGCAGCAGTTCGAGTACATGACGCTCCACCTCCT TGACGGCAAGTCAGAGAACATTGCTTGCCTGTTCTACGAGGTACTCGAGT ACATCGATGACGCCATCAGCAACGGTGGCCGCGTTTACGTACGTCTGCGC ATGGGTGTGCTGCTTCCAAACTAGTGTCTAACGTTCTGTAGGTGCACTGC CAGCAAGGAGTGTCGCGCTCCAGTGCCATGCTTATCCTGTACCTGATGTG GAAAATGCACAAGCCTTTCAACGAGACGCACGAGTACGTGAAGAAGCTGC GTCAGGCCAGCAGCCCCAACGCAGGCTTCATCAGCCAGCTGATGGAATGG TGGAAGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92904:252..760+

>mRNA_M-pyrifera_M_contig92904.21483.1 ID=mRNA_M-pyrifera_M_contig92904.21483.1|Name=mRNA_M-pyrifera_M_contig92904.21483.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig92904:252..760+ (Macrocystis pyrifera P11B4 male)
ATGGGAGGAGCCTCAATGGCCAAGAAGTTCGACCAGATCTGCTCCCAGAT
CACCGAGTCTCTCTACTTGGGAAGCGACACCGTCGCTCGGGACAGCAGAG
AACTCCGGCGAAACAAGATCACCCACATCCTGAATTGTGCTGGAGGCTAC
TGCGGCAACTACTTTCCGCAGCAGTTCGAGTACATGACGCTCCACCTCCT
TGACGGCAAGTCAGAGAACATTGCTTGCCTGTTCTACGAGGTACTCGAGT
ACATCGATGACGCCATCAGCAACGGTGGCCGCGTTTACATGGGAGGAGCC
TCAATGGCCAAGAAGTTCGACCAGATCTGCTCCCAGATCACCGAGTCTCT
CTACTTGGGAAGCGACACCGTCGCTCGGGACAGCAGAGAACTCCGGCGAA
ACAAGATCACCCACATCCTGAATTGTGCTGGAGGCTACTGCGGCAACTAC
TTTCCGCAGCAGTTCGAGTACATGACGCTCCACCTCCTTGACGGCAAGTC
AGAGAACATTGCTTGCCTGTTCTACGAGGTACTCGAGTACATCGATGACG
CCATCAGCAACGGTGGCCGCGTTTACGTGCACTGCCAGCAAGGAGTGTCG
CGCTCCAGTGCCATGCTTATCCTGTACCTGATGTGGAAAATGCACAAGCC
TTTCAACGAGACGCACGAGTACGTGAAGAAGCTGCGTCAGGCCAGCAGCC
CCAACGCAGGCTTCATCAGCCAGCTGATGGAATGGTGGAAGAGGGTGCAC
TGCCAGCAAGGAGTGTCGCGCTCCAGTGCCATGCTTATCCTGTACCTGAT
GTGGAAAATGCACAAGCCTTTCAACGAGACGCACGAGTACGTGAAGAAGC
TGCGTCAGGCCAGCAGCCCCAACGCAGGCTTCATCAGCCAGCTGATGGAA
TGGTGGAAGAGG
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