mRNA_M-pyrifera_M_contig92857.21474.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92857.21474.1
Unique NamemRNA_M-pyrifera_M_contig92857.21474.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92857.21474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92857contigM-pyrifera_M_contig92857:136..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score67.4
Seed ortholog evalue6e-09
Seed eggNOG ortholog68886.XP_009691673.1
KEGG koko:K10599
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022607,GO:0022613,GO:0022618,GO:0032446,GO:0032991,GO:0034622,GO:0034641,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0061630,GO:0061659,GO:0065003,GO:0070534,GO:0070647,GO:0071006,GO:0071012,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990904
EggNOG free text desc.Prp19/Pso4-like
EggNOG OGs3KBPB@422676,3Y9YY@5794,3Z3NH@5863,KOG0289@1,KOG0289@2759
EC2.3.2.27
COG Functional cat.A
Best tax levelPiroplasmida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400,ko04121
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.5554209-CDS-M-pyrifera_M_contig92857:135..5491622816841.5554209-CDS-M-pyrifera_M_contig92857:135..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92857 136..549 -
1692278210.0024111-CDS-M-pyrifera_M_contig92857:135..5491692278210.0024111-CDS-M-pyrifera_M_contig92857:135..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92857 136..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92857.21474.1prot_M-pyrifera_M_contig92857.21474.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92857 136..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92857.21474.1

>prot_M-pyrifera_M_contig92857.21474.1 ID=prot_M-pyrifera_M_contig92857.21474.1|Name=mRNA_M-pyrifera_M_contig92857.21474.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
LKGISKQGTFSPHSSTKQRVSAVAYPSELASGRLPENACVTGGDDGAVVL
FDISEGTTLGHSEAAHKGGVFDLDIHPTRCGFFLSAGGDGTAKLWQCGDG
DLTSVGEYRPFSDTLWGSCFHPSGDVILSVGNDGAWSL
back to top

mRNA from alignment at M-pyrifera_M_contig92857:136..549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92857.21474.1 ID=mRNA_M-pyrifera_M_contig92857.21474.1|Name=mRNA_M-pyrifera_M_contig92857.21474.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig92857:136..549- (Macrocystis pyrifera P11B4 male)
TTGAAGGGAATCTCCAAACAAGGAACATTTTCTCCGCACTCTTCAACGAA
GCAACGGGTGAGTGCTGTTGCATACCCATCTGAATTGGCAAGTGGTAGAC
TGCCAGAAAATGCTTGTGTGACTGGTGGTGATGACGGAGCAGTTGTATTG
TTTGATATTTCAGAGGGTACAACGCTTGGACATAGTGAAGCAGCACACAA
AGGAGGTGTATTTGATCTTGACATTCATCCAACTCGTTGTGGTTTCTTCC
TATCTGCTGGTGGAGATGGAACTGCCAAGTTGTGGCAATGTGGTGATGGT
GACTTGACTTCAGTTGGTGAATATCGTCCATTTTCTGATACACTGTGGGG
GAGTTGCTTTCATCCCTCCGGTGATGTGATTTTGTCAGTAGGAAATGATG
GAGCGTGGAGTCTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig92857:136..549-

>mRNA_M-pyrifera_M_contig92857.21474.1 ID=mRNA_M-pyrifera_M_contig92857.21474.1|Name=mRNA_M-pyrifera_M_contig92857.21474.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig92857:136..549- (Macrocystis pyrifera P11B4 male)
TTGAAGGGAATCTCCAAACAAGGAACATTTTCTCCGCACTCTTCAACGAA
GCAACGGGTGAGTGCTGTTGCATACCCATCTGAATTGGCAAGTGGTAGAC
TGCCAGAAAATGCTTGTGTGACTGGTGGTGATGACGGAGCAGTTGTATTG
TTTGATATTTCAGAGGGTACAACGCTTGGACATAGTGAAGCAGCACACAA
AGGAGGTGTATTTGATCTTGACATTCATCCAACTCGTTGTGGTTTCTTCC
TATCTGCTGGTGGAGATGGAACTGCCAAGTTGTGGCAATGTGGTGATGGT
GACTTGACTTCAGTTGGTGAATATCGTCCATTTTCTGATACACTGTGGGG
GAGTTGCTTTCATCCCTCCGGTGATGTGATTTTGTCAGTAGGAAATGATG
GAGCGTGGAGTCTTTTGAAGGGAATCTCCAAACAAGGAACATTTTCTCCG
CACTCTTCAACGAAGCAACGGGTGAGTGCTGTTGCATACCCATCTGAATT
GGCAAGTGGTAGACTGCCAGAAAATGCTTGTGTGACTGGTGGTGATGACG
GAGCAGTTGTATTGTTTGATATTTCAGAGGGTACAACGCTTGGACATAGT
GAAGCAGCACACAAAGGAGGTGTATTTGATCTTGACATTCATCCAACTCG
TTGTGGTTTCTTCCTATCTGCTGGTGGAGATGGAACTGCCAAGTTGTGGC
AATGTGGTGATGGTGACTTGACTTCAGTTGGTGAATATCGTCCATTTTCT
GATACACTGTGGGGGAGTTGCTTTCATCCCTCCGGTGATGTGATTTTGTC
AGTAGGAAATGATGGAGCGTGGAGTCTT
back to top