mRNA_M-pyrifera_M_contig92846.21471.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92846.21471.1
Unique NamemRNA_M-pyrifera_M_contig92846.21471.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92846.21471.1 vs. uniprot
Match: A0A354GW15_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GW15_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 4.370e-15
Identity = 54/135 (40.00%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  244 ATETFDDLRLASRRYFAKQLSGLSAPEQLTFLQTQDEGHFHNSLSLGLQHREELGMSDRSAAWLLNGKAVAQESLSERIRLARESDDPAMAQQLEALASLRSQLARLSLKRPEAWVELDNVRKRLPTGSLLVDIA 648
            A +  D  R   RRY A  L+ LS  +QL +L  +D   FH + S+ L  RE+   +  SA W+LNGKAVAQESL++R+  A ++ D A        A L    A+ S  R E WVEL  +RK LP  ++L++I+
Sbjct:  319 AAQAADQERRVVRRYVANALAVLSEKDQLAYLDHRDAKQFHIAESIALNRREDAAPAALSAGWVLNGKAVAQESLAQRVLAALDARDLA--------AHLGKTSAQSS--RAEPWVELAEIRKALPADAVLIEIS 443          
BLAST of mRNA_M-pyrifera_M_contig92846.21471.1 vs. uniprot
Match: A0A354H169_9BACT (CHAT domain-containing protein n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354H169_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 5.220e-15
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  244 ATETFDDLRLASRRYFAKQLSGLSAPEQLTFLQTQDEGHFHNSLSLGLQHREELGMSDRSAAWLLNGKAVAQESLSERIRLARESDDPAMAQQLEALASLRSQLARLSLKRPEAWVELDNVRKRLPTGSLLVDIA 648
            A +  D  R   RR+  + L  LS  EQL FL+ +D   FH + SL L  RE+   + +SA WLLNGKAVAQE+L++R+  A ++ D A           R   A     R E WVEL  VRK LP  ++L++I+
Sbjct:  265 AADAADQERRIVRRHVTRVLPVLSEKEQLAFLEHKDAVFFHVAESLALSRREDATTAAQSAGWLLNGKAVAQEALAQRVLAALDARDHAA----------RLGKASAPSSRAEPWVELAEVRKALPADAVLIEIS 389          
BLAST of mRNA_M-pyrifera_M_contig92846.21471.1 vs. uniprot
Match: A0A354H164_9BACT (CHAT domain-containing protein (Fragment) n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354H164_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 1.630e-14
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  238 TAATETFDDLRLASRRYFAKQLSGLSAPEQLTFLQTQDEGHFHNSLSLGLQHREELGMSDRSAAWLLNGKAVAQESLSERIRLARESDDPAMAQQLEALASLRSQLARLSLKRPEAWVELDNVRKRLPTGSLLVDIA 648
            T A +  D  R   R +  + L  LS  EQL FL+  D  +FH + SL L  REE   +  SA WLLNGKAVAQE+L++R+  A ++ D A        A L    A  S  R E WVEL  VRK LP  ++L++I+
Sbjct:  305 TEALKPADQERRIVRHHVTRVLPVLSEKEQLAFLEHNDARNFHVAESLALSRREEAATAALSAGWLLNGKAVAQEALAQRVLAALDARDFA--------ARLGKTSAPSS--RAEPWVELAEVRKTLPADAVLIEIS 431          
BLAST of mRNA_M-pyrifera_M_contig92846.21471.1 vs. uniprot
Match: A0A7C4V6T2_9BACT (CHAT domain-containing protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4V6T2_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 6.200e-14
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:  268 RLASRRYFAKQLSGLSAPEQLTFLQTQDEGHFHNSLSLGLQHREELGMSDRSAAWLLNGKAVAQESLSERIRLARESDDPAMAQQLEALASLRSQLARLS 567
            R  SRR+ A+ L  L+  EQL FL  + E   H +LSL L      G++  SA+W+LNGKA+AQE+L+E   LAR+S DPA+A+ L+ L ++R +LA  S
Sbjct:  403 RRISRRHVARTLPVLAESEQLRFLTQKHEPELHQALSLALSKDAAPGLTSLSASWILNGKAIAQEALAESSLLARDSADPALAEDLKQLTAVRRKLANRS 502          
BLAST of mRNA_M-pyrifera_M_contig92846.21471.1 vs. uniprot
Match: A0A517YGY4_9BACT (Photosystem I assembly protein Ycf3 n=2 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YGY4_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 1.050e-9
Identity = 50/163 (30.67%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  259 DDLRLASRRYFAKQLSGLSAPEQLTFLQTQDEGHFHNSLSLGLQHREELGMSDRSAAWLLNGKAVAQESLSERIRLARESDDPAMAQQLEALASLRSQLARLSLKRPEA---------------------------------WVELDNVRKRLPTGSLLVDIA 648
            D  R A R +  + L GLS  EQL FL+   +  +HNSLS G   R    +S+ SAAWL+NGK +++ESL+  I+L    + P  A  +  L +LR +LA + +++P++                                 WV++  +RK +P  ++LV+ A
Sbjct:  543 DQARRAIRFHEVRTLPGLSEAEQLAFLRNMHDKDWHNSLSWGRSERTTSRISEISAAWLVNGKGISEESLATGIQL----EKPETAALVAQLRTLRGKLADI-VRQPQSDERDRRQAELAAEQQRLVRLLGQARGEDLTSDPWVDIAGIRKAIPAKTMLVNTA 700          
BLAST of mRNA_M-pyrifera_M_contig92846.21471.1 vs. uniprot
Match: A0A517YGT5_9BACT (Photosystem I assembly protein Ycf3 n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YGT5_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 3.900e-8
Identity = 48/161 (29.81%), Postives = 77/161 (47.83%), Query Frame = 1
Query:  247 TETFDDLRLASRRYFAKQLSGLSAPEQLTFLQTQDEGHFHNSLSLGLQHREELGMSDRSAAWLLNGKAVAQESLSERI-------------------RLARESDDP---AMAQQLEALASLRSQLARLSLKRP------EAWVELDNVRKRLPTGSLLVDI 645
            T   D+ R A R +  + L G+S  EQLT+L+T  + ++H SLS G          + SAAWL+NGK + +ESL+  +                    L    D P   A  ++ E L + + +L RL  +        E WV+++ VR+ +P  ++LV+I
Sbjct:  453 TNYLDESRRAIRIHEVQVLQGISEAEQLTYLRTNHDENWHESLSFGRSQLTRSRAVELSAAWLINGKGITEESLATAVYFETAQINVHLDELRTIRGNLTEIGDKPKSEARDRRKEQLEAEQQRLVRLIDQARAEGLSIETWVDIEGVRRSIPAKAMLVNI 613          
BLAST of mRNA_M-pyrifera_M_contig92846.21471.1 vs. uniprot
Match: A0A2D5GRG8_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2D5GRG8_9PLAN)

HSP 1 Score: 63.5 bits (153), Expect = 4.050e-8
Identity = 51/190 (26.84%), Postives = 82/190 (43.16%), Query Frame = 1
Query:    1 LYEQTLELRRKVLGEEHPHTLDSMHNLANALSKLGDNATARTLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTAATETFDDLRLASRRYFAKQLSGLSAPEQLTFLQTQDEGHFHNSLSLGLQHREELGMSDRSAAWLLNGKAVAQESLSERIRLARESDDPAMAQQLEALASLRSQLARLSL 570
            L +++  +  + LG+EHP TL   + LAN     G+ A A  L                                     AA   FD+ R  ++R+  K L+GL+  EQL FL+  D+  +  +  +    R    ++++   W+LN KA+ QE+LS   RL R+    A     E L  +R QLA +++
Sbjct:  367 LVKESFAIAHRTLGDEHPQTLGIKYRLANYEYNDGNYAIAVQLLGEIISTRKRLFHDQNRQLGSALGFLGTIEAIQGNWVAAARAFDEQRRGAKRFSDKVLTGLNQREQLRFLKGIDQVDYRRATGIMWPQRNNPQVAEKHLEWILNRKALVQETLSSHERLLRQFQGAARVF-AENLFEVRRQLASITI 555          
BLAST of mRNA_M-pyrifera_M_contig92846.21471.1 vs. uniprot
Match: UPI001C658DBB (tetratricopeptide repeat protein n=1 Tax=Micromonospora saelicesensis TaxID=285676 RepID=UPI001C658DBB)

HSP 1 Score: 52.8 bits (125), Expect = 5.210e-6
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   16 LELRRKVLGEEHPHTLDSMHNLANALSKLGDNATARTLH 132
            ++LRR+VLGEEH HTL SM+NLA  LS++G+   AR LH
Sbjct:    1 MQLRRRVLGEEHRHTLTSMNNLAGMLSRMGELTEARRLH 39          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92846.21471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A354GW15_9BACT4.370e-1540.00Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A354H169_9BACT5.220e-1540.00CHAT domain-containing protein n=1 Tax=Planctomyce... [more]
A0A354H164_9BACT1.630e-1441.61CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7C4V6T2_9BACT6.200e-1446.00CHAT domain-containing protein n=1 Tax=Gemmataceae... [more]
A0A517YGY4_9BACT1.050e-930.67Photosystem I assembly protein Ycf3 n=2 Tax=Anatil... [more]
A0A517YGT5_9BACT3.900e-829.81Photosystem I assembly protein Ycf3 n=1 Tax=Anatil... [more]
A0A2D5GRG8_9PLAN4.050e-826.84Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
UPI001C658DBB5.210e-661.54tetratricopeptide repeat protein n=1 Tax=Micromono... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92846contigM-pyrifera_M_contig92846:2..757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.8
Seed ortholog evalue7.2e-09
Seed eggNOG ortholog1123508.JH636440_gene2532
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tetratricopeptide repeat
EggNOG OGs2J07X@203682,COG0457@1,COG0457@2,COG4995@1,COG4995@2
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons2
Model size648
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.436172-CDS-M-pyrifera_M_contig92846:1..761622816841.436172-CDS-M-pyrifera_M_contig92846:1..76Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92846 2..76 -
1692278209.9590404-CDS-M-pyrifera_M_contig92846:1..761692278209.9590404-CDS-M-pyrifera_M_contig92846:1..76Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92846 2..76 -
1622816841.4497201-CDS-M-pyrifera_M_contig92846:184..7571622816841.4497201-CDS-M-pyrifera_M_contig92846:184..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92846 185..757 -
1692278209.971706-CDS-M-pyrifera_M_contig92846:184..7571692278209.971706-CDS-M-pyrifera_M_contig92846:184..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92846 185..757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92846.21471.1prot_M-pyrifera_M_contig92846.21471.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92846 2..757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92846.21471.1

>prot_M-pyrifera_M_contig92846.21471.1 ID=prot_M-pyrifera_M_contig92846.21471.1|Name=mRNA_M-pyrifera_M_contig92846.21471.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=216bp
LYEQTLELRRKVLGEEHPHTLDSMHNLANALSKLGDNATARTLHEQTLAL
KRKILGDEHPHTLDSMDNLAEVLVQLDDVTAATETFDDLRLASRRYFAKQ
LSGLSAPEQLTFLQTQDEGHFHNSLSLGLQHREELGMSDRSAAWLLNGKA
VAQESLSERIRLARESDDPAMAQQLEALASLRSQLARLSLKRPEAWVELD
NVRKRLPTGSLLVDIA
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mRNA from alignment at M-pyrifera_M_contig92846:2..757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92846.21471.1 ID=mRNA_M-pyrifera_M_contig92846.21471.1|Name=mRNA_M-pyrifera_M_contig92846.21471.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig92846:2..757- (Macrocystis pyrifera P11B4 male)
CTTTACGAGCAGACGCTGGAGCTGAGGCGGAAGGTGTTGGGGGAAGAGCA TCCCCACACGCTCGACTCGATGCATAACCTGGCCAACGCGCTCAGTAAAC TCGGTGACAATGCGACCGCCCGCACGCTGCACGAGCAGACGCTGGCGCTG AAGCGAAAGATCCTGGGGGACGAGCATCCCCACACGCTCGACTCGATGGA CAACCTGGCCGAGGTACTGGTCCAGCTTGACGACGTCACCGCAGCGACCG AAACGTTCGACGACCTTCGCCTCGCCTCGCGGCGATACTTCGCGAAACAG CTGTCGGGCCTCTCGGCCCCAGAACAATTGACGTTCCTGCAGACTCAGGA CGAAGGTCACTTTCACAACAGCCTGTCACTGGGACTGCAGCATCGCGAGG AGCTTGGTATGTCAGATCGCTCGGCGGCCTGGCTGCTGAACGGCAAAGCC GTGGCGCAGGAGTCACTGTCAGAGCGGATTCGCCTGGCACGGGAGAGCGA TGATCCGGCGATGGCTCAGCAACTGGAGGCACTGGCTTCCCTGCGATCCC AACTGGCCCGACTTAGTCTGAAGGTCGTGCCTCCTGAGCAGCAGGAAGGA CACCAACAGACGTTGGCCACGCTGCAGGAGCAGGAATCGCGTTTGTCGCG TGAGCTGGGTCAACGCGGACTCGACGTGGAGCGACCGGAGGCTTGGGTCG AATTGGACAACGTGCGAAAGAGACTGCCGACAGGCAGCCTGTTGGTCGAC ATCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92846:2..757-

>mRNA_M-pyrifera_M_contig92846.21471.1 ID=mRNA_M-pyrifera_M_contig92846.21471.1|Name=mRNA_M-pyrifera_M_contig92846.21471.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1296bp|location=Sequence derived from alignment at M-pyrifera_M_contig92846:2..757- (Macrocystis pyrifera P11B4 male)
CTTTACGAGCAGACGCTGGAGCTGAGGCGGAAGGTGTTGGGGGAAGAGCA
TCCCCACACGCTCGACTCGATGCATAACCTGGCCAACGCGCTCAGTAAAC
TCGGTGACAATGCGACCGCCCGCACGCTGCACGAGCAGACGCTGGCGCTG
AAGCGAAAGATCCTGGGGGACGAGCATCCCCACACGCTCGACTCGATGGA
CAACCTGGCCGAGGTACTGGTCCAGCTTGACGACGTCACCGCAGCGACCG
AAACGTTCGACGACCTTCGCCTCGCCTCGCGGCGATACTTCGCGAAACAG
CTGTCGGGCCTCTCGGCCCCAGAACAATTGACGTTCCTGCAGACTCAGGA
CGAAGGTCACTTTCACAACAGCCTGTCACTGGGACTGCAGCATCGCGAGG
AGCTTGGTATGTCAGATCGCTCGGCGGCCTGGCTGCTGAACGGCAAAGCC
GTGGCGCAGGAGTCACTGTCAGAGCGGATTCGCCTGGCACGGGAGAGCGA
TGATCCGGCGATGGCTCAGCAACTGGAGGCACTGGCTTCCCTGCGATCCC
AACTGGCCCGACTTAGTCTGAAGCTTTACGAGCAGACGCTGGAGCTGAGG
CGGAAGGTGTTGGGGGAAGAGCATCCCCACACGCTCGACTCGATGCATAA
CCTGGCCAACGCGCTCAGTAAACTCGGTGACAATGCGACCGCCCGCACGC
TGCACGAGCAGACGCTGGCGCTGAAGCGAAAGATCCTGGGGGACGAGCAT
CCCCACACGCTCGACTCGATGGACAACCTGGCCGAGGTACTGGTCCAGCT
TGACGACGTCACCGCAGCGACCGAAACGTTCGACGACCTTCGCCTCGCCT
CGCGGCGATACTTCGCGAAACAGCTGTCGGGCCTCTCGGCCCCAGAACAA
TTGACGTTCCTGCAGACTCAGGACGAAGGTCACTTTCACAACAGCCTGTC
ACTGGGACTGCAGCATCGCGAGGAGCTTGGTATGTCAGATCGCTCGGCGG
CCTGGCTGCTGAACGGCAAAGCCGTGGCGCAGGAGTCACTGTCAGAGCGG
ATTCGCCTGGCACGGGAGAGCGATGATCCGGCGATGGCTCAGCAACTGGA
GGCACTGGCTTCCCTGCGATCCCAACTGGCCCGACTTAGTCTGAAGCGAC
CGGAGGCTTGGGTCGAATTGGACAACGTGCGAAAGAGACTGCCGACAGGC
AGCCTGTTGGTCGACATCGCCCGACCGGAGGCTTGGGTCGAATTGGACAA
CGTGCGAAAGAGACTGCCGACAGGCAGCCTGTTGGTCGACATCGCC
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