mRNA_M-pyrifera_M_contig92840.21470.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92840.21470.1
Unique NamemRNA_M-pyrifera_M_contig92840.21470.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92840.21470.1 vs. uniprot
Match: A0A846DUA6_9CYAN (PAS domain-containing protein n=1 Tax=Desertifilum sp. SIO1I2 TaxID=2607799 RepID=A0A846DUA6_9CYAN)

HSP 1 Score: 89.7 bits (221), Expect = 1.470e-18
Identity = 49/114 (42.98%), Postives = 59/114 (51.75%), Query Frame = 1
Query:    1 VIWVRSATTGKFRYVSPEFERVWGLDVSRCLEDPATWRSAVHPDDRNRVEAFLMNPAEDGAAASEYRILSPQGTEVWFEDRVCGEMQSEGGEAL-ISGIAIDQTQRVRKEAESR 339
            V W+R   T   RYVSP +ER+WGLD     EDP  W + +HPDDR   E      A  G    EYRI+ P G   W  DR C  + SE GE    +GIA D T R + E + R
Sbjct:  414 VFWIRDTLTQYIRYVSPAYERLWGLDPRELYEDPQVWVNYIHPDDRASTEQAFWEKAPSGQFDQEYRIVLPNGHVRWVSDR-CFPLYSETGEIYRFTGIAEDITDRKQFEEQLR 526          
BLAST of mRNA_M-pyrifera_M_contig92840.21470.1 vs. uniprot
Match: A0A6J4V7J2_9CHLR (Uncharacterized protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4V7J2_9CHLR)

HSP 1 Score: 86.3 bits (212), Expect = 2.340e-17
Identity = 44/109 (40.37%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    1 VIWVRSATTGKFRYVSPEFERVWGLDVSRCLEDPATWRSAVHPDDRNRVEAFLMNPAEDGAAASEYRILSPQGTEVWFEDRVCGEMQSEGGEALISGIAIDQTQRVRKE 327
            V W+     G+  Y+SP +ER+WGLD    L D   W   VHP+DR RV A     A+ G    EYRI++P G   W  DR    +   G    I+GIA D T R R+E
Sbjct:   58 VFWLTDLRDGRVVYLSPAYERLWGLDRQALLADYRAWADVVHPEDRARVAAAFQRDAQAGRFDEEYRIVTPTGAVHWLRDRGFPTLVGAGPAHRIAGIAEDITDRRRRE 166          
BLAST of mRNA_M-pyrifera_M_contig92840.21470.1 vs. uniprot
Match: A0A2V8KDV2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8KDV2_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 3.040e-17
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    1 VIWVRSATTGKFRYVSPEFERVWGLDVSRCLEDPATWRSAVHPDDRNRVEAFLMN---PAEDGAAASEYRILSPQGTEVWFEDRVCGEMQSEGGEALISGIAIDQTQRVRKEAESR 339
            VIW  +    K  YVSP FER+WGL V++  ++P  W  A+HPDDR RV +   +     +      EYRI+ P G   W  +R    +  EG   L SGI+ D T+R R E E R
Sbjct:  261 VIWFTALEPEKVLYVSPSFERIWGLPVNKLYKNPRLWIEAIHPDDRQRVTSTFSHWVAGEQVNYHNVEYRIVQPDGAIRWIHERGVLSLNPEGKPCLASGISTDITERKRAEEELR 376          
BLAST of mRNA_M-pyrifera_M_contig92840.21470.1 vs. uniprot
Match: A0A2V5U150_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5U150_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 3.270e-17
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    1 VIWVRSATTGKFRYVSPEFERVWGLDVSRCLEDPATWRSAVHPDDRNRVEAFLMN---PAEDGAAASEYRILSPQGTEVWFEDRVCGEMQSEGGEALISGIAIDQTQRVRKEAESR 339
            VIW  +    K  YVSP FER+WGL V++  ++P  W  A+HPDDR RV +   +     +      EYRI+ P G   W  +R    +  EG   L SGI+ D T+R R E E R
Sbjct:  261 VIWFTALEPEKVLYVSPSFERIWGLPVNKLYKNPRLWIEAIHPDDRQRVTSTFSHWVAGEQVNYHNVEYRIVQPDGAIRWIHERGVLSLNPEGKPCLASGISTDITERKRAEEELR 376          
BLAST of mRNA_M-pyrifera_M_contig92840.21470.1 vs. uniprot
Match: K9XWY9_STAC7 (Multi-sensor hybrid histidine kinase n=1 Tax=Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437) TaxID=111780 RepID=K9XWY9_STAC7)

HSP 1 Score: 84.7 bits (208), Expect = 8.380e-17
Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = 1
Query:    1 VIWVRSATTGKFRYVSPEFERVWGLDVSRCLEDPATWRSAVHPDDRNRVEAFLMNPAEDGAAASEYRILSPQGTEVWFEDRVCGEMQSEGGEAL-ISGIAIDQTQRVRKEAE 333
            V W+R     +  YVSP +ER+WGLD     ++P  W + +HPDDR  +       A  G    EYRI+ P G+  W  DR C  +Q E G+    +GIA D T+R + E E
Sbjct:  351 VFWIREELEQRVSYVSPAYERLWGLDPQELYKNPLVWGNYIHPDDREAIAFAFQEKAAKGEFDQEYRIILPDGSIRWIRDR-CFPLQDETGKIYRFTGIAEDITKRKQAELE 461          
BLAST of mRNA_M-pyrifera_M_contig92840.21470.1 vs. uniprot
Match: A0A2V5XIJ7_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5XIJ7_9BACT)

HSP 1 Score: 84.0 bits (206), Expect = 1.530e-16
Identity = 46/112 (41.07%), Postives = 56/112 (50.00%), Query Frame = 1
Query:    1 VIWVRSATTGKFRYVSPEFERVWGLDVSRCLEDPATWRSAVHPDDRNRVEAFLMN---PAEDGAAASEYRILSPQGTEVWFEDRVCGEMQSEGGEALISGIAIDQTQRVRKE 327
            VIW  +    K  YVSP FERVWGL V    E+P  W  A+HPDDR RV +         +      EYRI+ P G   W  +R    +  EG   L SGI+ D T+R R E
Sbjct:  219 VIWFTALEPEKVLYVSPSFERVWGLPVKNLYENPRLWIEAIHPDDRERVTSTFSRWVAGEQVNYHNVEYRIVQPGGAVRWIHERGVLSLNPEGKPCLASGISTDITERKRAE 330          
BLAST of mRNA_M-pyrifera_M_contig92840.21470.1 vs. uniprot
Match: D5RHQ0_9PROT (Histidine kinase (Fragment) n=1 Tax=Roseomonas cervicalis ATCC 49957 TaxID=525371 RepID=D5RHQ0_9PROT)

HSP 1 Score: 82.4 bits (202), Expect = 2.760e-16
Identity = 45/113 (39.82%), Postives = 58/113 (51.33%), Query Frame = 1
Query:    1 VIWVRSATTGKFRYVSPEFERVWGLDVSRCLEDPATWRSAVHPDDRNRVEAFLMNPAEDGAAASEYRILSPQGTEVWFEDRVCGEMQSEGGEALISGIAIDQTQRVRKEAESR 339
            V+W+   T  +  +VSP FER+WG+   R +  P  W  AVHP DRNRVE        DG+  +EYRIL P G   W  D     + ++G      G+A D T    K AESR
Sbjct:   29 VMWMTDPTGRQLDFVSPAFERIWGIARERLIAQPLLWLEAVHPADRNRVETAWRQAERDGSFDAEYRILRPDGGMRWIRDIGFPMLDAQGVIVRRGGLARDIT--AAKAAESR 139          
BLAST of mRNA_M-pyrifera_M_contig92840.21470.1 vs. uniprot
Match: A0A660VZC2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A660VZC2_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 2.780e-16
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 VIWVRSATTGKFRYVSPEFERVWGLDVSRCLEDPATWRSAVHPDDRNRVEAFLMNPAEDGAAASEYRILSPQGTEVWFEDRVCGEMQSEGGEALISGIAIDQTQ 312
            V+W+R   TG++ Y+SP++ER+WG  V    E P++W+  +H +DR RVE+ L    + G    EYRI+ P G   W   R      ++G    I+GI +D T+
Sbjct:  252 VLWLRDMATGRYVYISPQYERIWGCPVRDLYERPSSWKENIHEEDRERVESALARQ-KSGDYDVEYRIVRPDGEVRWVRSRAFLVRDADGEVRRIAGIVMDITE 354          
BLAST of mRNA_M-pyrifera_M_contig92840.21470.1 vs. uniprot
Match: A0A257CK38_9BURK (Histidine kinase n=1 Tax=Burkholderiales bacterium PBB6 TaxID=2015568 RepID=A0A257CK38_9BURK)

HSP 1 Score: 83.2 bits (204), Expect = 2.790e-16
Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 1
Query:    1 VIWVRSATTGKFRYVSPEFERVWGLDVSRCLEDPATWRSAVHPDDRNRVEAFLMNPAEDGAAASEYRILSPQGTEVWFEDRVCGEMQSEGGEALISGIAIDQT-QRVRKEAE 333
            VIW+   + G+  YVSP FERVWGL V    +   +W   +HPDDR  V         +    +EYR++ P G+ +W  DR    + + GG + + G+A D T  R  KEAE
Sbjct:  272 VIWMSRPSDGRTLYVSPAFERVWGLPVQALYDQQVSWMDCIHPDDRQAVADAYFGTTLERPFEAEYRVVRPDGSMIWVRDRGKPVLDARGGLSHLVGMAEDITLARAAKEAE 383          
BLAST of mRNA_M-pyrifera_M_contig92840.21470.1 vs. uniprot
Match: A0A8J6ZLK4_9CYAN (PAS domain-containing protein n=1 Tax=Fortiea sp. LEGE XX443 TaxID=1828611 RepID=A0A8J6ZLK4_9CYAN)

HSP 1 Score: 82.4 bits (202), Expect = 5.310e-16
Identity = 40/105 (38.10%), Postives = 52/105 (49.52%), Query Frame = 1
Query:    1 VIWVRSATTGKFRYVSPEFERVWGLDVSRCLEDPATWRSAVHPDDRNRVEAFLMNPAEDGAAASEYRILSPQGTEVWFEDRVCGEMQSEGGEALISGIAIDQTQR 315
            +IW     TGKF YV+P +E++WG       E P +W +AVHPDD +RV   +       +   EYRIL P G   W  DR       +G     +GIA D T R
Sbjct:  283 LIWWEDPQTGKFVYVNPAYEKIWGRSCESLYEKPLSWMNAVHPDDCDRVHQMVRQCVAGESTDIEYRILRPDGLVRWIWDRTLAIRDEQGNIRYYAGIAEDITDR 387          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92840.21470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A846DUA6_9CYAN1.470e-1842.98PAS domain-containing protein n=1 Tax=Desertifilum... [more]
A0A6J4V7J2_9CHLR2.340e-1740.37Uncharacterized protein n=1 Tax=uncultured Thermom... [more]
A0A2V8KDV2_9BACT3.040e-1739.66Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]
A0A2V5U150_9BACT3.270e-1739.66Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
K9XWY9_STAC78.380e-1738.39Multi-sensor hybrid histidine kinase n=1 Tax=Stani... [more]
A0A2V5XIJ7_9BACT1.530e-1641.07Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
D5RHQ0_9PROT2.760e-1639.82Histidine kinase (Fragment) n=1 Tax=Roseomonas cer... [more]
A0A660VZC2_9BACT2.780e-1636.54Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A257CK38_9BURK2.790e-1637.50Histidine kinase n=1 Tax=Burkholderiales bacterium... [more]
A0A8J6ZLK4_9CYAN5.310e-1638.10PAS domain-containing protein n=1 Tax=Fortiea sp. ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92840contigM-pyrifera_M_contig92840:314..652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score85.1
Seed ortholog evalue2.3e-14
Seed eggNOG ortholog111780.Sta7437_3065
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PhoQ Sensor
EggNOG OGs1G09B@1117,3VJ2S@52604,COG0642@1,COG0745@1,COG0745@2,COG0784@1,COG0784@2,COG2202@1,COG2202@2,COG2203@1,COG2203@2,COG2205@2,COG3829@1,COG3829@2
COG Functional cat.T
Best tax levelPleurocapsales
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.3939157-CDS-M-pyrifera_M_contig92840:313..6521622816841.3939157-CDS-M-pyrifera_M_contig92840:313..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92840 314..652 -
1692278209.94776-CDS-M-pyrifera_M_contig92840:313..6521692278209.94776-CDS-M-pyrifera_M_contig92840:313..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92840 314..652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92840.21470.1prot_M-pyrifera_M_contig92840.21470.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92840 314..652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92840.21470.1

>prot_M-pyrifera_M_contig92840.21470.1 ID=prot_M-pyrifera_M_contig92840.21470.1|Name=mRNA_M-pyrifera_M_contig92840.21470.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
VIWVRSATTGKFRYVSPEFERVWGLDVSRCLEDPATWRSAVHPDDRNRVE
AFLMNPAEDGAAASEYRILSPQGTEVWFEDRVCGEMQSEGGEALISGIAI
DQTQRVRKEAESR
back to top

mRNA from alignment at M-pyrifera_M_contig92840:314..652-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92840.21470.1 ID=mRNA_M-pyrifera_M_contig92840.21470.1|Name=mRNA_M-pyrifera_M_contig92840.21470.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig92840:314..652- (Macrocystis pyrifera P11B4 male)
GTCATCTGGGTGCGCAGCGCGACGACCGGTAAGTTCCGCTACGTCAGTCC CGAGTTCGAGCGCGTGTGGGGCCTGGACGTCTCGCGCTGCCTGGAGGACC CCGCGACCTGGCGCAGCGCGGTGCATCCGGACGATCGCAATCGGGTCGAG GCCTTCCTGATGAACCCCGCGGAGGACGGCGCCGCGGCCAGCGAGTACCG GATCCTCAGCCCCCAAGGCACGGAGGTGTGGTTCGAGGACCGCGTCTGCG GCGAGATGCAGAGCGAGGGCGGTGAAGCGTTGATCTCTGGCATCGCGATC GACCAGACCCAGCGCGTGCGCAAGGAGGCCGAGTCGCGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig92840:314..652-

>mRNA_M-pyrifera_M_contig92840.21470.1 ID=mRNA_M-pyrifera_M_contig92840.21470.1|Name=mRNA_M-pyrifera_M_contig92840.21470.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig92840:314..652- (Macrocystis pyrifera P11B4 male)
GTCATCTGGGTGCGCAGCGCGACGACCGGTAAGTTCCGCTACGTCAGTCC
CGAGTTCGAGCGCGTGTGGGGCCTGGACGTCTCGCGCTGCCTGGAGGACC
CCGCGACCTGGCGCAGCGCGGTGCATCCGGACGATCGCAATCGGGTCGAG
GCCTTCCTGATGAACCCCGCGGAGGACGGCGCCGCGGCCAGCGAGTACCG
GATCCTCAGCCCCCAAGGCACGGAGGTGTGGTTCGAGGACCGCGTCTGCG
GCGAGATGCAGAGCGAGGGCGGTGAAGCGTTGATCTCTGGCATCGCGATC
GACCAGACCCAGCGCGTGCGCAAGGAGGCCGAGTCGCGCGTCATCTGGGT
GCGCAGCGCGACGACCGGTAAGTTCCGCTACGTCAGTCCCGAGTTCGAGC
GCGTGTGGGGCCTGGACGTCTCGCGCTGCCTGGAGGACCCCGCGACCTGG
CGCAGCGCGGTGCATCCGGACGATCGCAATCGGGTCGAGGCCTTCCTGAT
GAACCCCGCGGAGGACGGCGCCGCGGCCAGCGAGTACCGGATCCTCAGCC
CCCAAGGCACGGAGGTGTGGTTCGAGGACCGCGTCTGCGGCGAGATGCAG
AGCGAGGGCGGTGAAGCGTTGATCTCTGGCATCGCGATCGACCAGACCCA
GCGCGTGCGCAAGGAGGCCGAGTCGCGC
back to top