mRNA_M-pyrifera_M_contig92839.21469.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92839.21469.1
Unique NamemRNA_M-pyrifera_M_contig92839.21469.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92839.21469.1 vs. uniprot
Match: A0A523PII9_9BACT (AFOR_N domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PII9_9BACT)

HSP 1 Score: 124 bits (312), Expect = 1.270e-29
Identity = 87/187 (46.52%), Postives = 100/187 (53.48%), Query Frame = 1
Query:   13 GPGARRGVPYGLLVTGDEVGSATGRGGLGTLLAERGCWAIVVRVCNVAARPGGEHGEGWLARAAAASPRLKARARSGTLELFAAFAARGDVG--------PELAGWGRAARAAEAGHH--GCKGCPTPCGMVFER-GGARXXXXXXAAHALGAELGIAAFEDVLEVLAACDHAGVDAREAAGVLALL 540
            G    RGV +  L  GD+  S  GRGGLG  L   G  A+V+    V   PG EHGE  L  A   SPRL AR   GT+EL  AF  RGD+         P   G   A  A +AG    GCKGCPTPCG VFER  GAR      A +ALG  LG+  F+D L +LA CD  G+DA+EA   LALL
Sbjct:  180 GAAGERGVAFANLAAGDDPPSFVGRGGLGAALGRLGLKAVVLTAQPV---PGVEHGE--LVEALTRSPRLVARGAGGTMELMQAFGVRGDLRARGYSEPLPREVGVRLAREAEDAGRERKGCKGCPTPCGWVFERTSGARQGAHFSAVYALGTNLGLEGFDDALALLAVCDRFGLDAKEAGACLALL 361          
BLAST of mRNA_M-pyrifera_M_contig92839.21469.1 vs. uniprot
Match: A0A2D5AVJ3_9BACT (AFOR_N domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AVJ3_9BACT)

HSP 1 Score: 123 bits (309), Expect = 3.310e-29
Identity = 87/194 (44.85%), Postives = 101/194 (52.06%), Query Frame = 1
Query:    1 VLVCGPGARRGVPYGLLVTGDEVGSATGRGGLGTLLAERGCWAIVVRVCNVAARPGGEHGEGWLARAAAASPRLKARARSGTLELFAAFAARG-------------DVGPELAGWGRAARAAEAGHHGCKGCPTPCGMVFER-GGARXXXXXXAAHALGAELGIAAFEDVLEVLAACDHAGVDAREAAGVLALL 540
            +L  GP   RGVP+  L  G E  S  GRGGLG   A  G  A+V+          GE  E  L R    SPRL+ARAR GT ELF A +ARG             D   EL    R  R       GC+GCPTPCG VF+R  G R      A+ ALG ELG+A FED LE+L+ CD   +DAREA  VLAL+
Sbjct:  205 ILCIGPAGERGVPFASLAAGVESPSFVGRGGLGASFAALGLKALVIEAHQDFQGVAGEAEE--LIRLLTRSPRLRARARGGTFELFGALSARGGLRAAEGDRALSCDEAQELFDQAREQRVE---FKGCRGCPTPCGWVFDRPDGPRQGARFSASRALGTELGLACFEDSLELLSVCDELAIDAREAGAVLALI 393          
BLAST of mRNA_M-pyrifera_M_contig92839.21469.1 vs. uniprot
Match: A0A7C2AJ81_9BACT (AFOR_N domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2AJ81_9BACT)

HSP 1 Score: 121 bits (304), Expect = 1.510e-28
Identity = 84/184 (45.65%), Postives = 98/184 (53.26%), Query Frame = 1
Query:    1 VLVCGPGARRGVPYGLLVTGDEVGSATGRGGLGTLLAERGCWAIVVRVCNVAARPGGEHGEGWLARAAAASPRLKARARSGTLELFAAFAARGDVGPELAGWGRAA---RAAEAGHHGCKGCPTPCGMVFERG-GARXXXXXXAAHALGAELGIAAFEDVLEVLAACDHAGVDAREAAGVLALL 540
            VL  GP     +P+  L TG    S  GRGGLG L    G  A+VVR    A+ P  E   G L  A   SPRL ARA  GT+ELF A+AARG++G +     R A   R A     GC  CPTPCG  FERG G+       A  AL   LGIA F+  LE+L  CD  GVDA+E   +LALL
Sbjct:  167 VLSVGPAGEASIPFATLGTGGRKTSFVGRGGLGALFGAMGLKALVVRGARDASAPNDERALG-LQAALVRSPRLAARAAGGTIELFEAYAARGELGGDAEAARRIAEQARIARDSREGCPRCPTPCGWTFERGDGSAQGVRFGAGRALSVNLGIADFDAALELLGLCDSFGVDAKEVGTMLALL 349          
BLAST of mRNA_M-pyrifera_M_contig92839.21469.1 vs. uniprot
Match: A0A2D6HH13_9BACT (AFOR_N domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HH13_9BACT)

HSP 1 Score: 118 bits (295), Expect = 2.440e-27
Identity = 85/186 (45.70%), Postives = 98/186 (52.69%), Query Frame = 1
Query:    1 VLVCGPGARRGVPYGLLVTGDEVGSATGRGGLGTLLAERGCWAIVVRVCNVAARPGGEHGEGWLARAAAASPRLKARARSGTLELFAAFAARGDVGPELAGWGRAARAA----EAGHH--GCKGCPTPCGMVFER-GGARXXXXXXAAHALGAELGIAAFEDVLEVLAACDHAGVDAREAAGVLAL 537
            +L  GP   RGV +  L  G++     GRGGLG LL   G  A+VV    VAA       +  LAR  AASPRL+ARA  GT EL A  A RG+ G        A R A       HH  GC+GCPTPCG VFER GG R      A H LG  LG+   E  L ++AACD  GVDA+EA   L L
Sbjct:  174 LLCVGPAGERGVAFANLAGGEDPPGFVGRGGLGALLGGLGLKAVVVAAEPVAAAGP----DSALARDLAASPRLRARAEGGTFELLAISAVRGEPGGPSGDVDAAVRLAGDLESTDHHRRGCRGCPTPCGWVFERPGGGRQGGRFSALHPLGPSLGLEGGEGALALMAACDAVGVDAKEAGACLVL 355          
BLAST of mRNA_M-pyrifera_M_contig92839.21469.1 vs. uniprot
Match: A0A518D339_9BACT (AFOR_N domain-containing protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518D339_9BACT)

HSP 1 Score: 103 bits (256), Expect = 4.210e-22
Identity = 82/200 (41.00%), Postives = 98/200 (49.00%), Query Frame = 1
Query:    4 LVCGPGARRGVPYGLLVTGDEVGSATGRGGLGTLLAERGCWAIVVRVCNVAARPGGEHGEGWLARAAAASPRLKARARSGTLELFAAFAARGDVGPE------------------LAGWGRAARAAEAGHHGCKGCPTPCGMVFER---GGARXXXXXXAAHALGAELGIAAFEDVLEVLAACDHAGVDAREAAGVLALL 540
            LVCGP   RG+ +  L +GD   S  GRGGLG  L   G    +V V   A  P GE  +  L R  A SPRL  RA  G  E     A RG  G +                   A +G A +A   G  GC+GCPTPCG VF+    GGA       AA +LG  LG+   +DVL +LA CD  G+DA+E  GVLALL
Sbjct:  179 LVCGPAGDRGIAFATLASGDPP-SFVGRGGLGATLGASG----LVGVHVTAEAPAGER-DVELERLLARSPRLVHRASGGGFEQALGAAVRGGFGGDGTEREPGEDGRGEDAVARAAAYGDAWKARRGGRVGCRGCPTPCGFVFDAIVGGGAGVRGHFGAARSLGEPLGLRDPDDVLALLARCDAVGLDAKETGGVLALL 372          
BLAST of mRNA_M-pyrifera_M_contig92839.21469.1 vs. uniprot
Match: A0A2E5X543_9BACT (AFOR_N domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X543_9BACT)

HSP 1 Score: 102 bits (255), Expect = 5.850e-22
Identity = 84/213 (39.44%), Postives = 97/213 (45.54%), Query Frame = 1
Query:   13 GPGARRGVPYGLLVTGDEVGSATGRGGLGTLLAERGCWAIVV--------RVCNVAARPGGEHGEGW---LARAAAASPRLKARARSGTLELFAAFAARGD-------------VGPELAGWGRAARAAEAGHHGCKGCPTPCGMVFERGGARXXXXXXAAHALGAELGIAAFEDVLEVLAACDHAGVDAREAAGVLALLRALDADARAELVR 579
            GP    G+    L TG E GS  GRGGLG      G  A+VV             +A  GG+   G    LA A  ASPRL+ARA  GTLELF A+ ARGD             V   L     AA     G  GC  CPTPCG  FE  G R      A +ALG  +G    +  L +LA CD  G+DA+     LALL   D +A   LVR
Sbjct:  236 GPAGEAGLIGANLCTGGEAGSFVGRGGLGARFGGLGLKALVVLAGGPAMGMAAGESAAVGGDDYGGPGNNLALALKASPRLRARADGGTLELFQAYGARGDLRGAGYAEPVSGAVVNRLVNEVEAAGGERRGQRGCHRCPTPCGWTFETRGGRTTAHFSALYALGLNVGEEHLDGALRLLAVCDEMGLDAKSTGASLALLADGDGEAMERLVR 448          
BLAST of mRNA_M-pyrifera_M_contig92839.21469.1 vs. uniprot
Match: A0A521KB31_9BACT (AFOR_C domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KB31_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 1.430e-18
Identity = 69/147 (46.94%), Postives = 82/147 (55.78%), Query Frame = 1
Query:  154 AARPGGEHGEGWLARAAAASPRLKARARSGTLELFAAFAARGD--VGPELAGWGRA--ARAAEAGHHGCKGCPTPCGMVFER-GGARXXXXXXAAHALGAELGIAAFEDVLEVLAACDHAGVDAREAAGVLALLRALDADARAELVR 579
            AAR   +     L R  A+SPRL AR+  GTLEL+ A+ ARG+  VG   AG   A  ARA     HGC+GCPTPCG  F R  G+       AA ALG  LG+A F   LE+LAACD AG+DARE   +L L  A D     +  R
Sbjct:   25 AARESADAAGAALRRLLASSPRLLARSAGGTLELYHAYGARGEPTVGSAEAGHRLAQEARAHGVERHGCRGCPTPCGWEFAREDGSAQRAHFGAALALGPALGLADFAAQLELLAACDRAGLDAREMGALLELACARDPSLHGDAAR 171          
BLAST of mRNA_M-pyrifera_M_contig92839.21469.1 vs. uniprot
Match: A0A800MG96_9BACT (AFOR_N domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800MG96_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 1.180e-15
Identity = 67/175 (38.29%), Postives = 87/175 (49.71%), Query Frame = 1
Query:    4 LVCGPGARRGVPYGLLVTGDEVGSATGRGGLGTLLAERGCWAIVVRVCNVAARPGGEHGEGWLARAAAASPRLKARARSGTLELFAAFAARGDVGPELAGWGRAARAAEAGHHGCKGCPTPCGMVFERGGARXXXXXXAAHALGAELGIAAFE--DVLEVLAACDHAGVDAREAA 522
            L  GP A+ GV +  L  G +  S  GRGGLG  LA+ G   +  +   VA++P  E     L+RA   SPRL  R+  GTLELF       + G        A   +++  HGC+GCPTPCG+V  R GA          AL   LG  A +  + L VL  C+  G+D REAA
Sbjct:  173 LSAGPAAQAGVRHAHLAAGHDPPSFVGRGGLGRALAQHGLLGVFAQAQPVASKPSAE-----LSRALLESPRLLERSLGGTLELF------DEAGVASGQMVDAPTVSDSQRHGCRGCPTPCGIVL-RDGAGPGVGTMRFSALQPLLGSLAQDSAEALGVLEVCNRLGLDVREAA 335          
BLAST of mRNA_M-pyrifera_M_contig92839.21469.1 vs. uniprot
Match: A0A2D5XNI0_9BACT (AFOR_N domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XNI0_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 9.150e-15
Identity = 68/176 (38.64%), Postives = 89/176 (50.57%), Query Frame = 1
Query:    4 LVCGPGARRGVPYGLLVTGDEVGSATGRGGLGTLLAERGCWAIVVRVCNVAARPGGEHGEGWLARAAAASPRLKARARSGTLELF-AAFAARGDVGPELAGWGRAARAAEAGHHGCKGCPTPCGMVFERGGARXXXXXXAAHALGAELGIAAFE--DVLEVLAACDHAGVDAREAA 522
            L  GP A+ GV +  L  G +  S  GRGGLG  LA+ G   +  +   VA++P        L+RA   SPRL  R+  GTLELF  A  A G++         A   +++  HGC+GCPTPCG+V  R GA          AL   LG  A +  + L VL  C+  G+D REAA
Sbjct:  173 LSAGPAAQAGVRHAHLAAGHDPPSFVGRGGLGRALAQHGLLGVFAQAQPVASKPAA-----GLSRALLESPRLLERSLGGTLELFDEAGVASGEMVD-------APTVSDSQRHGCRGCPTPCGIVL-RDGAGPGVGTMRFSALQPLLGSLAQDSAEALGVLEVCNRLGLDVREAA 335          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92839.21469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A523PII9_9BACT1.270e-2946.52AFOR_N domain-containing protein n=1 Tax=Planctomy... [more]
A0A2D5AVJ3_9BACT3.310e-2944.85AFOR_N domain-containing protein n=1 Tax=Planctomy... [more]
A0A7C2AJ81_9BACT1.510e-2845.65AFOR_N domain-containing protein n=1 Tax=Planctomy... [more]
A0A2D6HH13_9BACT2.440e-2745.70AFOR_N domain-containing protein n=1 Tax=Planctomy... [more]
A0A518D339_9BACT4.210e-2241.00AFOR_N domain-containing protein n=1 Tax=Planctomy... [more]
A0A2E5X543_9BACT5.850e-2239.44AFOR_N domain-containing protein n=1 Tax=Planctomy... [more]
A0A521KB31_9BACT1.430e-1846.94AFOR_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A800MG96_9BACT1.180e-1538.29AFOR_N domain-containing protein (Fragment) n=1 Ta... [more]
A0A2D5XNI0_9BACT9.150e-1538.64AFOR_N domain-containing protein n=1 Tax=Planctomy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92839contigM-pyrifera_M_contig92839:115..693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.3601944-CDS-M-pyrifera_M_contig92839:114..6931622816841.3601944-CDS-M-pyrifera_M_contig92839:114..693Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92839 115..693 +
1692278209.9320629-CDS-M-pyrifera_M_contig92839:114..6931692278209.9320629-CDS-M-pyrifera_M_contig92839:114..693Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92839 115..693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92839.21469.1prot_M-pyrifera_M_contig92839.21469.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92839 115..693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92839.21469.1

>prot_M-pyrifera_M_contig92839.21469.1 ID=prot_M-pyrifera_M_contig92839.21469.1|Name=mRNA_M-pyrifera_M_contig92839.21469.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
VLVCGPGARRGVPYGLLVTGDEVGSATGRGGLGTLLAERGCWAIVVRVCN
VAARPGGEHGEGWLARAAAASPRLKARARSGTLELFAAFAARGDVGPELA
GWGRAARAAEAGHHGCKGCPTPCGMVFERGGARGGARFGAAHALGAELGI
AAFEDVLEVLAACDHAGVDAREAAGVLALLRALDADARAELVR
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mRNA from alignment at M-pyrifera_M_contig92839:115..693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92839.21469.1 ID=mRNA_M-pyrifera_M_contig92839.21469.1|Name=mRNA_M-pyrifera_M_contig92839.21469.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig92839:115..693+ (Macrocystis pyrifera P11B4 male)
GTGCTGGTGTGCGGGCCGGGTGCGCGGCGGGGCGTGCCGTACGGGCTGCT CGTGACGGGTGACGAGGTCGGCTCGGCGACGGGGCGCGGCGGGCTCGGGA CGCTGCTGGCGGAGCGGGGTTGTTGGGCGATCGTCGTGCGCGTTTGCAAC GTGGCGGCGCGTCCGGGTGGCGAGCACGGGGAAGGCTGGCTCGCGCGCGC GGCGGCGGCGAGTCCGCGGCTCAAGGCGCGGGCGCGCTCGGGCACGCTCG AGTTGTTCGCGGCGTTTGCGGCGCGCGGCGATGTCGGTCCCGAGCTGGCT GGCTGGGGGCGGGCGGCGCGCGCGGCCGAGGCCGGCCACCACGGGTGCAA GGGCTGTCCGACGCCGTGCGGGATGGTCTTCGAGCGGGGCGGCGCGCGTG GCGGCGCGCGCTTCGGCGCGGCGCATGCGCTGGGGGCCGAGTTGGGGATC GCGGCGTTCGAGGACGTGCTCGAGGTGCTCGCGGCCTGTGACCACGCGGG CGTCGATGCGCGCGAAGCCGCGGGGGTGCTGGCGTTGTTGCGCGCCCTCG ACGCGGACGCGCGCGCCGAGCTGGTGCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92839:115..693+

>mRNA_M-pyrifera_M_contig92839.21469.1 ID=mRNA_M-pyrifera_M_contig92839.21469.1|Name=mRNA_M-pyrifera_M_contig92839.21469.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig92839:115..693+ (Macrocystis pyrifera P11B4 male)
GTGCTGGTGTGCGGGCCGGGTGCGCGGCGGGGCGTGCCGTACGGGCTGCT
CGTGACGGGTGACGAGGTCGGCTCGGCGACGGGGCGCGGCGGGCTCGGGA
CGCTGCTGGCGGAGCGGGGTTGTTGGGCGATCGTCGTGCGCGTTTGCAAC
GTGGCGGCGCGTCCGGGTGGCGAGCACGGGGAAGGCTGGCTCGCGCGCGC
GGCGGCGGCGAGTCCGCGGCTCAAGGCGCGGGCGCGCTCGGGCACGCTCG
AGTTGTTCGCGGCGTTTGCGGCGCGCGGCGATGTCGGTCCCGAGCTGGCT
GGCTGGGGGCGGGCGGCGCGCGCGGCCGAGGCCGGCCACCACGGGTGCAA
GGGCTGTCCGACGCCGTGCGGGATGGTCTTCGAGCGGGGCGGCGCGCGTG
GCGGCGCGCGCTTCGGCGCGGCGCATGCGCTGGGGGCCGAGTTGGGGATC
GCGGCGTTCGAGGACGTGCTCGAGGTGCTCGCGGCCTGTGACCACGCGGG
CGTCGATGCGCGCGAAGCCGCGGGGGTGCTGGCGTTGTTGCGCGCCCTCG
ACGCGGACGCGCGCGCCGAGCTGGTGCGGGTGCTGGTGTGCGGGCCGGGT
GCGCGGCGGGGCGTGCCGTACGGGCTGCTCGTGACGGGTGACGAGGTCGG
CTCGGCGACGGGGCGCGGCGGGCTCGGGACGCTGCTGGCGGAGCGGGGTT
GTTGGGCGATCGTCGTGCGCGTTTGCAACGTGGCGGCGCGTCCGGGTGGC
GAGCACGGGGAAGGCTGGCTCGCGCGCGCGGCGGCGGCGAGTCCGCGGCT
CAAGGCGCGGGCGCGCTCGGGCACGCTCGAGTTGTTCGCGGCGTTTGCGG
CGCGCGGCGATGTCGGTCCCGAGCTGGCTGGCTGGGGGCGGGCGGCGCGC
GCGGCCGAGGCCGGCCACCACGGGTGCAAGGGCTGTCCGACGCCGTGCGG
GATGGTCTTCGAGCGGGGCGGCGCGCGTGGCGGCGCGCGCTTCGGCGCGG
CGCATGCGCTGGGGGCCGAGTTGGGGATCGCGGCGTTCGAGGACGTGCTC
GAGGTGCTCGCGGCCTGTGACCACGCGGGCGTCGATGCGCGCGAAGCCGC
GGGGGTGCTGGCGTTGTTGCGCGCCCTCGACGCGGACGCGCGCGCCGAGC
TGGTGCGG
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