mRNA_M-pyrifera_M_contig92827.21467.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92827.21467.1
Unique NamemRNA_M-pyrifera_M_contig92827.21467.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92827.21467.1 vs. uniprot
Match: A0A6A3I657_9STRA (Aa_trans domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I657_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.630e-9
Identity = 46/145 (31.72%), Postives = 72/145 (49.66%), Query Frame = 1
Query:   55 TFSAVGRRVLGRQGEAAIVVLVVVLEWAFCSGILLVISSTVNTVV-----SAVPTKAVIVILLPFLAVISSIRLLREMWVLVYFGCFVYFVGVLGVVFYYGFSTWDEHITDP----VLVNWKAIPAMIGSAVYSIEGINLVLPVE 462
            +F  VGR +LG +G+  I V +V  +   C      +++ ++ V+      AV  + +I  + P L ++S +R LR +  L     F    G+  +VFYY    W      P    VL +W  +P   G+AVYS EGI LVLP++
Sbjct:  147 SFGDVGREILGPKGKLLIDVFLVGTQLGICCVYFTFVATNIHVVLPESLQDAVNERQLIFAIFPVLLMLSWVRTLRRITPLSGLANFAVLSGI-AIVFYYSIDYWKHPKIQPRLAPVLADWSRLPEFYGTAVYSFEGIGLVLPIQ 290          
BLAST of mRNA_M-pyrifera_M_contig92827.21467.1 vs. uniprot
Match: W7TMF1_9STRA (Solute carrier family 36 (Proton amino acid symporter) member 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMF1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.140e-9
Identity = 47/156 (30.13%), Postives = 76/156 (48.72%), Query Frame = 1
Query:    1 HGRVQVKQDL--EEKDHLVQTFSAVGRRVLGRQGEAAIVVLVVVLEWAFCSGILLVISSTVNTVVSAVPTKAVIVILLPFLAVISSIRLLREMWVLVYFGCFVYFVGVLGVVFYYGFSTWDEHITDPVLVNWKAIPAMIGSAVYSIEGINLVLPVE 462
            H  +   QDL  EE+  +V+ +  +   V G +       L+  L   + SG ++VISS++  V+ AVP      I+ P L ++S +  + ++W +   G   Y  GV+G   +     +D     P+  +W+      G AVYS+EGINL LPV 
Sbjct:   44 HSPLGFPQDLLREEQGIVVENYEELAGAVFGPRAFRFCQTLMATLTLIYTSGFVIVISSSLYDVMPAVPRAMWCAIVFPILTLLSWVPFMEDLWFVSLLGLGTYLFGVVGSTLFVAARDFDPP-PAPMAWHWEGAAHFYGVAVYSLEGINLTLPVS 198          
BLAST of mRNA_M-pyrifera_M_contig92827.21467.1 vs. uniprot
Match: T0Q1N9_SAPDV (Aa_trans domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q1N9_SAPDV)

HSP 1 Score: 64.7 bits (156), Expect = 2.850e-9
Identity = 44/144 (30.56%), Postives = 76/144 (52.78%), Query Frame = 1
Query:   55 TFSAVGRRVLGRQGEAAIVVLVVVLEWAFCSGILLVISSTVNTVVSA-----VPTKAVIVILLPFLAVISSIRLLREMWVLVYFGCFVYFVGVLGVVFYYGFSTWDEHITDPVLVN---WKAIPAMIGSAVYSIEGINLVLPVE 462
            TF  VG  +LG+ G+ A+ V +V  + +FC     V+++ ++ ++ A        + +I+++ P +  +S IR L ++        F   +G+  +VFYY ++      T P LV    W  +P   G+AVYS EGI L+LP+E
Sbjct:   91 TFGDVGGELLGKHGKRAVNVFLVGTQLSFCCVFFTVVATNLHAILPAKLSHDFQERQLILLIFPIILGLSWIRSLHKITPFSALATFAVLLGI-AIVFYYSYAYASAAQTPPPLVTTFAWSRLPEFYGTAVYSFEGIGLILPLE 233          
BLAST of mRNA_M-pyrifera_M_contig92827.21467.1 vs. uniprot
Match: A0A0W8CUZ8_PHYNI (WRKY transcription factor 19 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CUZ8_PHYNI)

HSP 1 Score: 64.3 bits (155), Expect = 4.060e-9
Identity = 47/145 (32.41%), Postives = 73/145 (50.34%), Query Frame = 1
Query:   55 TFSAVGRRVLGRQGEAAIVVLVVVLEWAFCSGILLVISSTVNTVV-----SAVPTKAVIVILLPFLAVISSIRLLREMWVLVYFGCFVYFVGVLGVVFYYGFSTWDEHITDP----VLVNWKAIPAMIGSAVYSIEGINLVLPVE 462
            +F  VG  +LG +G+  I V +V  +   C      +++ ++ V+      A+  + +I  + P L ++S +R LR +        F    G+  +VFYY    W EH   P    VLV+W  IP   G+AVYS EGI LVLP++
Sbjct:  214 SFGDVGLHILGPKGKLLIDVFLVGTQLGICCVYFTFVATNIHVVLPESLQEAINERQLIFAIFPILLMLSWVRTLRRITPFSGLANFAVLSGI-AIVFYYSIDYW-EHPRKPREPTVLVDWSQIPEFYGTAVYSFEGIGLVLPIQ 356          
BLAST of mRNA_M-pyrifera_M_contig92827.21467.1 vs. uniprot
Match: W2QYV7_PHYPN (Aa_trans domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2QYV7_PHYPN)

HSP 1 Score: 64.3 bits (155), Expect = 4.100e-9
Identity = 47/145 (32.41%), Postives = 73/145 (50.34%), Query Frame = 1
Query:   55 TFSAVGRRVLGRQGEAAIVVLVVVLEWAFCSGILLVISSTVNTVV-----SAVPTKAVIVILLPFLAVISSIRLLREMWVLVYFGCFVYFVGVLGVVFYYGFSTWDEHITDP----VLVNWKAIPAMIGSAVYSIEGINLVLPVE 462
            +F  VG  +LG +G+  I V +V  +   C      +++ ++ V+      A+  + +I  + P L ++S +R LR +        F    G+  +VFYY    W EH   P    VLV+W  IP   G+AVYS EGI LVLP++
Sbjct:  152 SFGDVGLHILGPKGKLLIDVFLVGTQLGICCVYFTFVATNIHVVLPESLQEAINERQLIFAIFPILLMLSWVRTLRRITPFSGLANFAVLSGI-AIVFYYSIDYW-EHPRKPREPTVLVDWSQIPEFYGTAVYSFEGIGLVLPIQ 294          
BLAST of mRNA_M-pyrifera_M_contig92827.21467.1 vs. uniprot
Match: H3H0Z7_PHYRM (SH2 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0Z7_PHYRM)

HSP 1 Score: 63.5 bits (153), Expect = 8.200e-9
Identity = 46/145 (31.72%), Postives = 74/145 (51.03%), Query Frame = 1
Query:   55 TFSAVGRRVLGRQGEAAIVVLVVVLEWAFCSGILLVISSTVNTVVS-----AVPTKAVIVILLPFLAVISSIRLLREMWVLVYFGCFVYFVGVLGVVFYYGFSTWDEHITDP----VLVNWKAIPAMIGSAVYSIEGINLVLPVE 462
            +F  VGR +LG +G+  I V +V  +   C      +++ ++ V+S     A+  + +I  + P L ++S +R LR +        F    G+  +VFYY    W +H   P    VL +W  +P   G+AVYS EGI LVLP++
Sbjct:  607 SFGDVGREILGPKGKLLIDVFLVGTQLGICCVYFTFVATNIHVVLSESLQDAINERQLIFAIFPVLLMLSWVRTLRRITPFSGLANFAVLSGI-AIVFYYSIDYW-KHPKMPRDTTVLADWSKLPEFYGTAVYSFEGIGLVLPIQ 749          
BLAST of mRNA_M-pyrifera_M_contig92827.21467.1 vs. uniprot
Match: A0A4D9DA52_9STRA (Aa_trans domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA52_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.890e-8
Identity = 42/144 (29.17%), Postives = 71/144 (49.31%), Query Frame = 1
Query:   31 EEKDHLVQTFSAVGRRVLGRQGEAAIVVLVVVLEWAFCSGILLVISSTVNTVVSAVPTKAVIVILLPFLAVISSIRLLREMWVLVYFGCFVYFVGVLGVVFYYGFSTWDEHITDPVLVNWKAIPAMIGSAVYSIEGINLVLPVE 462
            EE+  +V+ +  +   V G +       L+  L   + SG ++VISS++  V+ AVP      I+ P L ++S +  ++++W +   G   Y  GV+G   +     ++     P+   W+      G AVYS+EGINL LPV 
Sbjct:  115 EEQGIVVENYEELAGAVFGPRAFRFCQTLMATLTLIYTSGFVIVISSSLYDVMPAVPRAMWCAIVFPILTLLSWVPFMKDLWFVSLLGLGTYLFGVVGSTLFVAARDFEPP-PAPMAWRWEGAAHFYGVAVYSLEGINLTLPVS 257          
BLAST of mRNA_M-pyrifera_M_contig92827.21467.1 vs. uniprot
Match: A0A0W8C5S2_PHYNI (Proton-coupled amino acid transporter 4 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C5S2_PHYNI)

HSP 1 Score: 62.4 bits (150), Expect = 2.100e-8
Identity = 47/146 (32.19%), Postives = 74/146 (50.68%), Query Frame = 1
Query:   55 TFSAVGRRVLGRQGEAAIVVLVVVLEWAFCSGILLVISSTVNTVV-----SAVPTKAVIVILLPFLAVISSIRLLREMWVLVYFGCFVYFVGV-LGVVFYYGFSTWDEHITDP----VLVNWKAIPAMIGSAVYSIEGINLVLPVE 462
            +F  VG  +LG +G+  I V +V  +   C      +++ ++ V+      A+  + +I  + P L ++S +R LR +           F G+ + +VFYY    W EH   P    VLV+W  IP   G+AVYS EGI LVLP++
Sbjct:  860 SFGDVGLHILGPKGKLLIDVFLVGTQLGICCVYFTFVATNIHVVLPESLQEAINERQLIFAIFPILLMLSWVRTLRRI---------TPFSGLGIAIVFYYSIDYW-EHPRKPREPTVLVDWSQIPEFYGTAVYSFEGIGLVLPIQ 995          
BLAST of mRNA_M-pyrifera_M_contig92827.21467.1 vs. uniprot
Match: A0A0P1AUK6_PLAHL (Amino acid auxin permease family n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUK6_PLAHL)

HSP 1 Score: 61.6 bits (148), Expect = 3.540e-8
Identity = 43/144 (29.86%), Postives = 71/144 (49.31%), Query Frame = 1
Query:   55 TFSAVGRRVLGRQGEAAIVVLVVVLEWAFCSGILLVISSTVNTVV-----SAVPTKAVIVILLPFLAVISSIRLLREMWVLVYFGCFVYFVGVLGVVFYYGFSTWDEHIT---DPVLVNWKAIPAMIGSAVYSIEGINLVLPVE 462
            +F  VGR++LG +G+  I V +V  +   C      +++ +N V+     + V  + ++  + P L ++S +R LR +        F   VG+  +VFYY    W          V  +W  +P   G+AVYS EGI LVLP++
Sbjct:  150 SFGEVGRKLLGPKGKMLIDVFLVGTQLGICCVYFTFVATNINVVLPERIQNVVNERQLVFAIFPALLLLSWVRTLRRITPFSSLANFAVLVGIT-IVFYYSIDYWKHPKMLRETTVYADWSQVPEFYGTAVYSFEGIGLVLPIQ 292          
BLAST of mRNA_M-pyrifera_M_contig92827.21467.1 vs. uniprot
Match: A0A7S1RWG5_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RWG5_ALECA)

HSP 1 Score: 61.2 bits (147), Expect = 4.410e-8
Identity = 41/141 (29.08%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   37 KDHLVQTFSAVGRRVLGRQGEAAIVVLVVVLEWAFCSGILLVISSTVNTVVSAVPTKAVIVI-LLPFLAVISSIRLLREMWVLVYFGCFVYFVGVLGVVFYYGFSTWDEHITDPVLVNWKAIPAMIGSAVYSIEGINLVLP 456
            K   V T++ +   + G+ G + + V ++VLE  FC+G ++V++S++         + +I+  + P L V++++R L+++W L  FG  VY  G++ +V   G +T +E     V   W  +P   GS +Y++E +  VLP
Sbjct:   96 KPRPVTTYAVLVSAIFGQIGGSMVEVCIIVLELCFCTGFVIVMTSSLVDFGWFGSDRLLIISGMFPVLLVLANVRFLKDLWQLSLFGLVVYSFGLVVIVVQDG-ATSEEERPPAVEHPWSHVPMAFGSLLYAMESLPTVLP 235          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92827.21467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6A3I657_9STRA1.630e-931.72Aa_trans domain-containing protein n=5 Tax=Phytoph... [more]
W7TMF1_9STRA2.140e-930.13Solute carrier family 36 (Proton amino acid sympor... [more]
T0Q1N9_SAPDV2.850e-930.56Aa_trans domain-containing protein n=2 Tax=Saprole... [more]
A0A0W8CUZ8_PHYNI4.060e-932.41WRKY transcription factor 19 n=1 Tax=Phytophthora ... [more]
W2QYV7_PHYPN4.100e-932.41Aa_trans domain-containing protein n=7 Tax=Phytoph... [more]
H3H0Z7_PHYRM8.200e-931.72SH2 domain-containing protein n=1 Tax=Phytophthora... [more]
A0A4D9DA52_9STRA1.890e-829.17Aa_trans domain-containing protein n=1 Tax=Nannoch... [more]
A0A0W8C5S2_PHYNI2.100e-832.19Proton-coupled amino acid transporter 4 n=2 Tax=Ph... [more]
A0A0P1AUK6_PLAHL3.540e-829.86Amino acid auxin permease family n=1 Tax=Plasmopar... [more]
A0A7S1RWG5_ALECA4.410e-829.08Hypothetical protein n=1 Tax=Alexandrium catenella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92827contigM-pyrifera_M_contig92827:1..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue6.2e-07
Seed eggNOG ortholog112098.XP_008614771.1
KEGG koko:K14209
KEGG TC2.A.18.8
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
EggNOG free text desc.amino acid transmembrane transporter activity
EggNOG OGsCOG0814@1,KOG1304@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.2762835-CDS-M-pyrifera_M_contig92827:0..4621622816841.2762835-CDS-M-pyrifera_M_contig92827:0..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92827 1..462 -
1692278209.8907907-CDS-M-pyrifera_M_contig92827:0..4621692278209.8907907-CDS-M-pyrifera_M_contig92827:0..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92827 1..462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92827.21467.1prot_M-pyrifera_M_contig92827.21467.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92827 1..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92827.21467.1

>prot_M-pyrifera_M_contig92827.21467.1 ID=prot_M-pyrifera_M_contig92827.21467.1|Name=mRNA_M-pyrifera_M_contig92827.21467.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
HGRVQVKQDLEEKDHLVQTFSAVGRRVLGRQGEAAIVVLVVVLEWAFCSG
ILLVISSTVNTVVSAVPTKAVIVILLPFLAVISSIRLLREMWVLVYFGCF
VYFVGVLGVVFYYGFSTWDEHITDPVLVNWKAIPAMIGSAVYSIEGINLV
LPVE
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mRNA from alignment at M-pyrifera_M_contig92827:1..462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92827.21467.1 ID=mRNA_M-pyrifera_M_contig92827.21467.1|Name=mRNA_M-pyrifera_M_contig92827.21467.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig92827:1..462- (Macrocystis pyrifera P11B4 male)
CATGGACGTGTGCAGGTGAAGCAGGATCTTGAAGAGAAAGACCATCTGGT ACAGACGTTCTCTGCTGTGGGGAGACGGGTGCTGGGTAGGCAGGGGGAGG CGGCGATTGTGGTGCTGGTGGTGGTGCTGGAGTGGGCGTTTTGCAGCGGG ATTCTCCTCGTGATCTCCAGTACAGTCAACACAGTTGTCAGCGCAGTGCC TACGAAGGCTGTTATTGTGATCTTGCTCCCTTTCCTCGCTGTAATCTCGA GCATTCGCCTCTTGCGCGAGATGTGGGTGCTGGTCTACTTCGGCTGCTTC GTGTACTTTGTGGGAGTGCTGGGAGTAGTGTTCTACTACGGCTTTTCTAC TTGGGATGAGCACATCACTGATCCAGTGCTCGTCAACTGGAAGGCCATTC CTGCAATGATCGGCTCTGCAGTCTACAGCATTGAGGGCATCAATCTGGTG CTGCCTGTGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92827:1..462-

>mRNA_M-pyrifera_M_contig92827.21467.1 ID=mRNA_M-pyrifera_M_contig92827.21467.1|Name=mRNA_M-pyrifera_M_contig92827.21467.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig92827:1..462- (Macrocystis pyrifera P11B4 male)
CATGGACGTGTGCAGGTGAAGCAGGATCTTGAAGAGAAAGACCATCTGGT
ACAGACGTTCTCTGCTGTGGGGAGACGGGTGCTGGGTAGGCAGGGGGAGG
CGGCGATTGTGGTGCTGGTGGTGGTGCTGGAGTGGGCGTTTTGCAGCGGG
ATTCTCCTCGTGATCTCCAGTACAGTCAACACAGTTGTCAGCGCAGTGCC
TACGAAGGCTGTTATTGTGATCTTGCTCCCTTTCCTCGCTGTAATCTCGA
GCATTCGCCTCTTGCGCGAGATGTGGGTGCTGGTCTACTTCGGCTGCTTC
GTGTACTTTGTGGGAGTGCTGGGAGTAGTGTTCTACTACGGCTTTTCTAC
TTGGGATGAGCACATCACTGATCCAGTGCTCGTCAACTGGAAGGCCATTC
CTGCAATGATCGGCTCTGCAGTCTACAGCATTGAGGGCATCAATCTGGTG
CTGCCTGTGGAACATGGACGTGTGCAGGTGAAGCAGGATCTTGAAGAGAA
AGACCATCTGGTACAGACGTTCTCTGCTGTGGGGAGACGGGTGCTGGGTA
GGCAGGGGGAGGCGGCGATTGTGGTGCTGGTGGTGGTGCTGGAGTGGGCG
TTTTGCAGCGGGATTCTCCTCGTGATCTCCAGTACAGTCAACACAGTTGT
CAGCGCAGTGCCTACGAAGGCTGTTATTGTGATCTTGCTCCCTTTCCTCG
CTGTAATCTCGAGCATTCGCCTCTTGCGCGAGATGTGGGTGCTGGTCTAC
TTCGGCTGCTTCGTGTACTTTGTGGGAGTGCTGGGAGTAGTGTTCTACTA
CGGCTTTTCTACTTGGGATGAGCACATCACTGATCCAGTGCTCGTCAACT
GGAAGGCCATTCCTGCAATGATCGGCTCTGCAGTCTACAGCATTGAGGGC
ATCAATCTGGTGCTGCCTGTGGAA
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