mRNA_M-pyrifera_M_contig92814.21462.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92814.21462.1
Unique NamemRNA_M-pyrifera_M_contig92814.21462.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92814.21462.1 vs. uniprot
Match: A0A6H5KWJ1_9PHAE (Methyltranfer_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWJ1_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.110e-33
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    1 KVARATQLASEQGVPNAKFQVTNALDMTFEDNSFDLVWACESGEHMPDKGKYIEEMTRVLKPGG 192
            +V RATQLA EQGVPNAKFQVTNALDMTFED SFDLVWACESGEHMPDKGKYIEEMTRVLKPGG
Sbjct:  269 QVERATQLAQEQGVPNAKFQVTNALDMTFEDESFDLVWACESGEHMPDKGKYIEEMTRVLKPGG 332
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BLAST of mRNA_M-pyrifera_M_contig92814.21462.1 vs. uniprot
Match: A0A1Y5HYE4_OSTTA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5HYE4_OSTTA)

HSP 1 Score: 114 bits (284), Expect = 7.110e-30
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 KVARATQLASEQGVPNAKFQVTNALDMTFEDNSFDLVWACESGEHMPDKGKYIEEMTRVLKPGG 192
            +V RAT+LASEQGV NA FQV NAL+MTFED++FDLVWACESGEHMPDK KY+EEM RVLKPGG
Sbjct:   46 QVKRATELASEQGVTNANFQVMNALEMTFEDDTFDLVWACESGEHMPDKKKYVEEMVRVLKPGG 109
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BLAST of mRNA_M-pyrifera_M_contig92814.21462.1 vs. uniprot
Match: A4RTJ9_OSTLU (Methyltranfer_dom domain-containing protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RTJ9_OSTLU)

HSP 1 Score: 114 bits (284), Expect = 2.880e-29
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 KVARATQLASEQGVPNAKFQVTNALDMTFEDNSFDLVWACESGEHMPDKGKYIEEMTRVLKPGG 192
            +V RAT+LA+EQGVPNAKFQV NAL M FED++FDLVWACESGEHMPDK KY+EEM RVLKPGG
Sbjct:  121 QVKRATELAAEQGVPNAKFQVMNALAMEFEDDTFDLVWACESGEHMPDKKKYVEEMVRVLKPGG 184
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BLAST of mRNA_M-pyrifera_M_contig92814.21462.1 vs. uniprot
Match: A0A7S2KT30_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2KT30_9DINO)

HSP 1 Score: 112 bits (281), Expect = 4.610e-29
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 KVARATQLASEQGVPNAKFQVTNALDMTFEDNSFDLVWACESGEHMPDKGKYIEEMTRVLKPGG 192
            +VARAT+LA E G+ N KFQVTNALDMTFED SFDLVW CESGEHMPDK KYIEEM+RVL PGG
Sbjct:  148 QVARATELAKEAGLTNVKFQVTNALDMTFEDGSFDLVWGCESGEHMPDKKKYIEEMSRVLAPGG 211
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BLAST of mRNA_M-pyrifera_M_contig92814.21462.1 vs. uniprot
Match: A0A7R9XTK4_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9XTK4_9CHLO)

HSP 1 Score: 114 bits (284), Expect = 1.400e-28
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 KVARATQLASEQGVPNAKFQVTNALDMTFEDNSFDLVWACESGEHMPDKGKYIEEMTRVLKPGG 192
            +V RAT+LA+EQGVPNAKFQV NAL M FED++FDLVWACESGEHMPDK KY+EEM RVLKPGG
Sbjct:  222 QVKRATELAAEQGVPNAKFQVMNALAMEFEDDTFDLVWACESGEHMPDKKKYVEEMVRVLKPGG 285
[Close]
BLAST of mRNA_M-pyrifera_M_contig92814.21462.1 vs. uniprot
Match: A0A090M814_OSTTA (Methyltransferase type 11 n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M814_OSTTA)

HSP 1 Score: 114 bits (284), Expect = 1.520e-28
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 KVARATQLASEQGVPNAKFQVTNALDMTFEDNSFDLVWACESGEHMPDKGKYIEEMTRVLKPGG 192
            +V RAT+LASEQGV NA FQV NAL+MTFED++FDLVWACESGEHMPDK KY+EEM RVLKPGG
Sbjct:  220 QVKRATELASEQGVTNANFQVMNALEMTFEDDTFDLVWACESGEHMPDKKKYVEEMVRVLKPGG 283
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BLAST of mRNA_M-pyrifera_M_contig92814.21462.1 vs. uniprot
Match: A0A482SYR5_9ARCH (Methyltransferase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYR5_9ARCH)

HSP 1 Score: 107 bits (266), Expect = 1.630e-28
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 KVARATQLASEQGVPNAKFQVTNALDMTFEDNSFDLVWACESGEHMPDKGKYIEEMTRVLKPGG 192
            +V RAT+LAS+QGV NA+F+V +ALDM   DNSFDLVWACESGEHMPDK KY+EEM RVLKPGG
Sbjct:   10 QVKRATKLASDQGVKNAEFKVMDALDMKLPDNSFDLVWACESGEHMPDKKKYVEEMARVLKPGG 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig92814.21462.1 vs. uniprot
Match: A0A7S0KAI3_9CHLO (Hypothetical protein n=3 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KAI3_9CHLO)

HSP 1 Score: 114 bits (284), Expect = 2.180e-28
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 KVARATQLASEQGVPNAKFQVTNALDMTFEDNSFDLVWACESGEHMPDKGKYIEEMTRVLKPGG 192
            +V RAT+LA+EQGVPNA+FQV NAL+MTF D++FDLVWACESGEHMPDK KY+EEM RVLKPGG
Sbjct:  260 QVKRATELAAEQGVPNAQFQVMNALEMTFPDDTFDLVWACESGEHMPDKKKYVEEMVRVLKPGG 323
[Close]
BLAST of mRNA_M-pyrifera_M_contig92814.21462.1 vs. uniprot
Match: C1EC64_MICCC (Methyltranfer_dom domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EC64_MICCC)

HSP 1 Score: 111 bits (277), Expect = 1.920e-27
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 KVARATQLASEQGVPNAKFQVTNALDMTFEDNSFDLVWACESGEHMPDKGKYIEEMTRVLKPGG 192
            +V RAT+LA+EQGVPNAKFQV NAL M F D++FDLVWACESGEHMPDK KY+EEM RVLKPGG
Sbjct:  231 QVKRATELAAEQGVPNAKFQVMNALAMDFPDDTFDLVWACESGEHMPDKKKYVEEMIRVLKPGG 294
[Close]
BLAST of mRNA_M-pyrifera_M_contig92814.21462.1 vs. uniprot
Match: A0A0M0K741_9EUKA (Methyltranfer_dom domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K741_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 2.810e-27
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:   10 RATQLASEQGVPNAKFQVTNALDMTFEDNSFDLVWACESGEHMPDKGKYIEEMTRVLKPGG 192
            RAT LA+E+GV NAKF+V +ALDMT+EDN+FDLVWACESGEHMPDK KY+EEM RVLKPGG
Sbjct:  150 RATALAAERGVSNAKFEVCDALDMTYEDNTFDLVWACESGEHMPDKVKYVEEMARVLKPGG 210
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92814.21462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWJ1_9PHAE1.110e-3393.75Methyltranfer_dom domain-containing protein n=2 Ta... [more]
A0A1Y5HYE4_OSTTA7.110e-3081.25S-adenosyl-L-methionine-dependent methyltransferas... [more]
A4RTJ9_OSTLU2.880e-2981.25Methyltranfer_dom domain-containing protein (Fragm... [more]
A0A7S2KT30_9DINO4.610e-2981.25Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7R9XTK4_9CHLO1.400e-2881.25Hypothetical protein n=1 Tax=Ostreococcus sp. 'luc... [more]
A0A090M814_OSTTA1.520e-2881.25Methyltransferase type 11 n=1 Tax=Ostreococcus tau... [more]
A0A482SYR5_9ARCH1.630e-2876.56Methyltransferase domain-containing protein n=1 Ta... [more]
A0A7S0KAI3_9CHLO2.180e-2879.69Hypothetical protein n=3 Tax=Ostreococcus mediterr... [more]
C1EC64_MICCC1.920e-2779.69Methyltranfer_dom domain-containing protein n=2 Ta... [more]
A0A0M0K741_9EUKA2.810e-2780.33Methyltranfer_dom domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92814contigM-pyrifera_M_contig92814:397..591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1e-27
Seed eggNOG ortholog2880.D7FUJ0
KEGG rclassRC00003,RC01662
KEGG koko:K05928,ko:K18534
KEGG ReactionR07236,R07501,R07504,R10491,R10492,R10709,R10710
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
Hectar predicted targeting categoryother localisation
EggNOG free text desc.sterol 24-C-methyltransferase activity
EggNOG OGsCOG0500@1,KOG1269@2759
Ec32 ortholog descriptionMPBQ/MSBQ transferase
Ec32 orthologEc-21_003900.1
EC2.1.1.295,2.1.1.95
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.0750837-CDS-M-pyrifera_M_contig92814:396..5911622816841.0750837-CDS-M-pyrifera_M_contig92814:396..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92814 397..591 +
1692278209.8109593-CDS-M-pyrifera_M_contig92814:396..5911692278209.8109593-CDS-M-pyrifera_M_contig92814:396..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92814 397..591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92814.21462.1prot_M-pyrifera_M_contig92814.21462.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92814 397..591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92814.21462.1

>prot_M-pyrifera_M_contig92814.21462.1 ID=prot_M-pyrifera_M_contig92814.21462.1|Name=mRNA_M-pyrifera_M_contig92814.21462.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
KVARATQLASEQGVPNAKFQVTNALDMTFEDNSFDLVWACESGEHMPDKG
KYIEEMTRVLKPGG*
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mRNA from alignment at M-pyrifera_M_contig92814:397..591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92814.21462.1 ID=mRNA_M-pyrifera_M_contig92814.21462.1|Name=mRNA_M-pyrifera_M_contig92814.21462.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig92814:397..591+ (Macrocystis pyrifera P11B4 male)
AAGGTGGCGCGTGCGACGCAGCTGGCTTCAGAGCAAGGCGTGCCGAACGC
CAAGTTTCAGGTGACGAACGCCCTAGACATGACCTTCGAGGACAACTCCT
TTGACCTGGTCTGGGCCTGCGAGAGCGGCGAGCACATGCCCGACAAGGGA
AAGTACATCGAGGAAATGACAAGGGTGCTCAAGCCTGGGGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92814:397..591+

>mRNA_M-pyrifera_M_contig92814.21462.1 ID=mRNA_M-pyrifera_M_contig92814.21462.1|Name=mRNA_M-pyrifera_M_contig92814.21462.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig92814:397..591+ (Macrocystis pyrifera P11B4 male)
AAGGTGGCGCGTGCGACGCAGCTGGCTTCAGAGCAAGGCGTGCCGAACGC
CAAGTTTCAGGTGACGAACGCCCTAGACATGACCTTCGAGGACAACTCCT
TTGACCTGGTCTGGGCCTGCGAGAGCGGCGAGCACATGCCCGACAAGGGA
AAGTACATCGAGGAAATGACAAGGGTGCTCAAGCCTGGGGGGTGAAAGGT
GGCGCGTGCGACGCAGCTGGCTTCAGAGCAAGGCGTGCCGAACGCCAAGT
TTCAGGTGACGAACGCCCTAGACATGACCTTCGAGGACAACTCCTTTGAC
CTGGTCTGGGCCTGCGAGAGCGGCGAGCACATGCCCGACAAGGGAAAGTA
CATCGAGGAAATGACAAGGGTGCTCAAGCCTGGGGGGTGA
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