mRNA_M-pyrifera_M_contig9277.21456.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9277.21456.1
Unique NamemRNA_M-pyrifera_M_contig9277.21456.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9277.21456.1 vs. uniprot
Match: D8LTT1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT1_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 3.610e-73
Identity = 120/172 (69.77%), Postives = 145/172 (84.30%), Query Frame = 1 
Query:   19 HGARHLLQSVNSDMWTPLMVACDAGSLETVRVLVEAGADSGVFNKDGLTALDVASSRNHLVIECYLRTEGAFSSLEFWGAADTGDSAAVAKLLKANGHLVGALDPDGRTALLRTCVGGHLKVARILVEGGADVDFQDASGLSPLSVSVMLGDVALARYLVQAGGARLSSKSK 534
            +GA+ LL S NSDMWTPLMVACDAGSL TV+VLVEAGAD   FN + LTALD+A+ RNHL++ECYLRTEGA +S +FW AAD GD+A ++KLL+ NGHLV +LD DGRTALLR+C+GGHL+VAR+LVE GADVDFQD+SG SPL V+ +LG+  L RYLVQ GGARL+ K+K
Sbjct:  868 NGAKDLLHSTNSDMWTPLMVACDAGSLATVQVLVEAGADLASFNNENLTALDIAADRNHLLVECYLRTEGAVTSDQFWSAADAGDAATISKLLRGNGHLVTSLDKDGRTALLRSCIGGHLEVARLLVEAGADVDFQDSSGTSPLGVAAVLGNKELTRYLVQIGGARLTLKNK 1039
[Close]
BLAST of mRNA_M-pyrifera_M_contig9277.21456.1 vs. uniprot
Match: A0A6H5KQW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQW0_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 5.370e-72
Identity = 129/210 (61.43%), Postives = 156/210 (74.29%), Query Frame = 1 
Query:   19 HGARHLLQSVNSDMWTPLMVACDAGSLETVRVLVEAGADSGVFNKDGLTALDVASSRNHLVIECYLRTEGAFSSLEFWGAADTGDSAAVAKLLKANGHLVGALDPDGRTALLRTCVGGHLKVARILVEGGAD--------------VDFQDASGLSPLSVSVMLGDVALA-----RYLVQAGGARLSSKSKTGWTPLMQAVAKGDLTMTR 591
            +GA+ L+ S NSDMWTPLMVACDAGSL TV+VLVEAGAD   FN + LTALD+A+ RNHL++ECYLRTEGA +S +FW AAD+GD+A ++KLL+ NGHLV +LD +GRTALLR+C+GGHL+VAR+LVE GAD               D  D S + P + S  L DV LA     RYLVQ GGARL+ K+K GWTPLMQAV KGDL +TR
Sbjct:  865 NGAKDLIHSTNSDMWTPLMVACDAGSLATVQVLVEAGADLASFNNENLTALDIAADRNHLLVECYLRTEGAVTSDQFWSAADSGDAATISKLLRGNGHLVMSLDKNGRTALLRSCIGGHLEVARLLVEAGADGIAPLGDGGVPNFTTDKGDTSSVKPRN-SHPLPDVLLAFVMERRYLVQIGGARLTLKNKVGWTPLMQAVVKGDLEITR 1073
[Close]
BLAST of mRNA_M-pyrifera_M_contig9277.21456.1 vs. uniprot
Match: H2XQR8_CIOIN (SAM domain-containing protein n=4 Tax=Ciona intestinalis TaxID=7719 RepID=H2XQR8_CIOIN)

HSP 1 Score: 73.9 bits (180), Expect = 6.710e-12
Identity = 58/187 (31.02%), Postives = 89/187 (47.59%), Query Frame = 1 
Query:   61 WTPLMVACDAGSLETVRVLVEAGADSGVFNKDGLTALDVASSRNHLVIECYL--RTEGAFSSLEFWG-----AADTGDSAAVAKLLKANGHLVGALDPDGRTALLRTCVGGHLKVARILVEGGADVDFQD-ASGLSPLSVSVMLGDVALARYLVQAGGARLSSKSKTGWTPLMQA--VAKGDLTMTR 591
            WTPLM+A   G L   ++LVE GA+    NK G TAL++A+      +  YL  RT    + +   G     A   GD   V  LL+A+G        DG T L+   + G L + ++L++  AD+D +D  +G + L  +   G    A YL++ G A +  ++  G T    A  +   D T+ R
Sbjct:  182 WTPLMIAALTGQLPMAKLLVEKGANPNFKNKQGKTALEIATDCEMKEVRGYLDHRTTDKPARVTESGESIIAAVKKGDYQKVFSLLEADGGKANKASSDGATPLMYASITGQLNLIKLLLDYNADIDARDYENGWTALMQATYYGKTQAAIYLIRRG-ANVGIQAHNGVTAFDMAMLINLNDTTLFR 367
[Close]
BLAST of mRNA_M-pyrifera_M_contig9277.21456.1 vs. uniprot
Match: A0A3S0Z389_ELYCH (Uncharacterized protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0Z389_ELYCH)

HSP 1 Score: 67.0 bits (162), Expect = 7.500e-10
Identity = 59/203 (29.06%), Postives = 90/203 (44.33%), Query Frame = 1 
Query:    1 LRVMLEHGARHLLQSVNSDMWTPLMVACDAGSLETVRVLVEAGADSGVFNKDGLTALDVAS--------SRNHLVIECYLRTEGAFSSLEFWGAADTGDSAAVAKLLKANGHLVGALDPDGRTALLRTCVGGHLKVARILVEGG-ADVDFQDASGLSPLSVSVMLGDVALARYLVQAGGARLSSKSKTGW-TPLMQAVAKGDL 579
            LR++L HGA      +    WTPLM+AC    +  + +L+ AGAD  + NKDG  +  +AS        SR  +       T           AA  G SAAV+ +L          D  G T  +    GGHL + + L++ G   V  +D +G   +  +   G  +  ++LV+  G  L+++S T   TPL  A   G +
Sbjct:   76 LRILLNHGAE--TNVLKRSDWTPLMLACTKPLVSAIDLLLGAGADPCLKNKDGWNSFHIASRDGTTDILSRLVVANPTVWATTSNNLRTPLHTAALHGQSAAVSWMLSECNFHPDCTDSCGVTPFMDAFRGGHLDIGKALLDTGKVVVGREDKAGRQAVHHAAQAGQRSAIQFLVKELGVELNAQSSTERETPLHAATKVGHM 276
[Close]
BLAST of mRNA_M-pyrifera_M_contig9277.21456.1 vs. uniprot
Match: UPI001D040E21 (uncharacterized protein n=1 Tax=Morchella sextelata TaxID=1174677 RepID=UPI001D040E21)

HSP 1 Score: 66.6 bits (161), Expect = 2.410e-9
Identity = 56/180 (31.11%), Postives = 92/180 (51.11%), Query Frame = 1 
Query:   70 LMVACDAGSLETVRVLVEAGA-DSGVFNKDGLTALDVASSRNHLVIECYLRTEGAF--SSLEFWGAADTGDSAAVAKLLKA--NGHLVGALDPDGRTALLRTCVGGHLKVARILVEGG-ADVDFQDASGLSPLSVSVMLGDVALARYLVQAGGARLSSKSKTGWTPLMQAVAKGDLTMTR 591
            LM A   G+ + V++L++    D  V N++GLTAL +AS+  H  I   L T+GA   S+     AA  G +     LL+   +  ++   D DG T LL   +GG++++ R L+     ++D+ +  G + L++++      +A  L+  G  R  SK   GWTPL  A + GD  + R
Sbjct: 1283 LMRATIGGNEDIVKLLLDQRKYDPNVPNREGLTALHIASAAKHWQILKLLHTKGAGMDSTKGLLAAALDGKNEIFQMLLEDYDDKEVLDHKDEDGDTVLLLAAIGGNVEIMRSLLNPHRCEIDYANMRGETALTLAISHRHPEVANLLLDRGVKRNISKIN-GWTPLHLAASTGDQNLIR 1461
[Close]
BLAST of mRNA_M-pyrifera_M_contig9277.21456.1 vs. uniprot
Match: F4P4C6_BATDJ (T-box domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4P4C6_BATDJ)

HSP 1 Score: 65.9 bits (159), Expect = 3.010e-9
Identity = 56/205 (27.32%), Postives = 98/205 (47.80%), Query Frame = 1 
Query:    7 VMLEHGARHLLQSVNSDMWTPLMVACDAGSLETVRVLVEAGADSGVFNKDGLTALDVASSRNHL-VIECYLRTEGAFSSLE--------FWGAADTGD----SAAVAKLLKANGHLVGALDPDGRTALLRTCV-GGHLKVARILVEGGADV--DFQDASGLSPLSVSVMLGDVALARYLVQAGGARLSSKSKTGWTPLMQAVAKG 573
            ++ EHG +  ++S + +  T LM+AC +GS E VR+L++ GA +    + G TAL +A +   +   E  L+ +   + L          W A +       S A+ +LL   G  V   DP G TA  R C+  G+++ A+ L+  GA +  +      ++ L  + + G + L R L++  G+  + +S+ G T    A   G
Sbjct:  147 ILNEHGQQISMESRDKNGKTILMLACQSGSGEMVRLLLQRGASTHSTTRSGKTALSIAVTYGSIKAAEAILQHDPEQAKLADLGGSTPLMWAAENASTTVRHSVAILELLLQQGVDVNQEDPRGHTAFDRLCITSGNVRAAKALILAGARIVQEVDKKHPMTSLMSAALNGHLELVRELMEKYGSDPTVRSEHGGTAKSFAETNG 351
[Close]
BLAST of mRNA_M-pyrifera_M_contig9277.21456.1 vs. uniprot
Match: A0A2V8GKU7_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8GKU7_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 7.190e-9
Identity = 52/164 (31.71%), Postives = 75/164 (45.73%), Query Frame = 1 
Query:   64 TPLMVACDAGSLETVRVLVEAGADSGVFNKDGLTAL-----DVASSRNHLVIECYLRTEGAFSSLEFWGAADTGDSAAVAKLLKANGHLVGALDPDGRTALLRTCVGGHLKVARILVEGGADVDFQDASGLSPLSVSVMLGDVALARYLVQAGGARLSSKSKTG 540
            TPLM A  AGSLE V++LVEAGAD    N    TAL     ++                          AA +  SA +  LL A G     +D    T L    +G   +  R+ V+ G DV+  +A+G +PL +S    ++A  + L+ A GAR+++ S  G
Sbjct:   76 TPLMYAAAAGSLEAVKLLVEAGADVNARNDMNSTALMWAATEIDKXXXXXXXXXXXXXXXXXXXXXXXXAAMSDRSADIVTLLIAKGADTRVVDKADDTMLHAAAIGNDTETIRLFVDAGLDVNAAEAAGFTPLMLSTQHHNLAAVKLLL-AKGARVNTVSGMG 238
[Close]
BLAST of mRNA_M-pyrifera_M_contig9277.21456.1 vs. uniprot
Match: D0NED6_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NED6_PHYIT)

HSP 1 Score: 64.7 bits (156), Expect = 9.280e-9
Identity = 59/208 (28.37%), Postives = 96/208 (46.15%), Query Frame = 1 
Query:   43 SVNSDMWTPLMVACDAGSLETVRVLVEAGAD-------------SGVFNKDGLTALDVASSRNHLVIECYL-----------RTEGAFSSLEFWGAADTGDSAAVAKLLKANGHLVGALDPDGRTALLRTCVGGHLKVARILVEGGADVDFQDASGLSPLS-VSVMLGDVALARYLVQAGGARLSSKSKTGWTPLMQAVAKGDLTMTR 591
            S N     PL  AC    +  V++L++ GAD             S +  ++G + L  A  +N   +   L             +G ++ L    A  T +   + +LL A G ++ A+D DG+T LL+ C+GG LK+ R+L+  GA+   Q+    SPL  +S    D  L R ++ A GA +++KS    TP+  A   G+   T+
Sbjct:  142 STNKAGLPPLHRACKTNDVALVKLLLKVGADLTTKDNFEKEATFSSIDEENGQSCLHTAIIKNFRKVTMALIRSGRAQVNAATRDGGWTPLHL--AVITEEVDVMTELLTA-GAMLDAVDADGQTPLLQACLGGKLKIVRLLLNAGANPAHQNKQAHSPLHYLSAFCRDRQLLRDII-ANGADVNAKSMKLNTPMHFAAMNGNEVATQ 345
[Close]
BLAST of mRNA_M-pyrifera_M_contig9277.21456.1 vs. uniprot
Match: G4Z3F6_PHYSP (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4Z3F6_PHYSP)

HSP 1 Score: 64.7 bits (156), Expect = 9.510e-9
Identity = 61/214 (28.50%), Postives = 95/214 (44.39%), Query Frame = 1 
Query:   28 RHLLQSVNSDMWTPLMVACDAGSLETVRVLVEAGAD--------------SGVFNKDGLTALDVASSRN-HLVIECYLRT----------EGAFSSLEFWGAADTGDSAAVAKLLKANGHLVGALDPDGRTALLRTCVGGHLKVARILVEGGADVDFQDASGLSPLS-VSVMLGDVALARYLVQAGGARLSSKSKTGWTPLMQAVAKGDLTMTR 591
            R    S N     PL  AC    ++ V++L+  GAD              S +    G + L  A  +N   V    +R+          EG +++L      +  D   V K L A G  + A+D DG+T LL+ C+GG LK+ R+++  GA+   Q+    SPL  +S    D  L R ++ A GA +++KS    TP+  A   G+   T+
Sbjct:  140 RAYFMSTNKAGLPPLHRACKTNDMQLVKLLLRLGADLTIKDYMQKIYATFSSLDEGSGQSCLHTAIIKNFRQVTFAMIRSGKVQINAATREGGWTALHLAIITEEID---VIKELLAAGATLDAVDADGQTPLLQACLGGQLKIVRLILNAGANPSHQNRQAHSPLHYLSAFCRDRQLLRDII-ANGADVNAKSMKLNTPMHFAAMNGNEVATQ 349
[Close]
BLAST of mRNA_M-pyrifera_M_contig9277.21456.1 vs. uniprot
Match: A0A8J9UWK9_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UWK9_BRAAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.120e-8
Identity = 53/200 (26.50%), Postives = 87/200 (43.50%), Query Frame = 1 
Query:    4 RVMLEHGARHLLQSVNSDMWTPLMVACDAGSLETVRVLVEAGADSGVF-NKDGLTAL-DVASSRNHLVIECYLRTEGAFSSLEFWG------AADTGDSAAVAKLLKANGHLVGALDPDGRTALLRTCVGGHLKVARILVEGGADVDFQDASGLSPLSVSVMLGDVALARYLVQAGGARLSSKSKTGWTPLMQAVAKGDL 579
            +V+L   A    Q +N   ++PL+ A      ET + L+  GAD  +  +KD  TAL D A++ N  +           ++ +  G      A     +     L+     +      D R AL      G++K+A++L+  GAD++ QD +G SPL  +V+      A +L+  G       SK   T L  A A G++
Sbjct: 3444 KVLLSKDADIDAQDING--YSPLIYAVRKNHTETAKFLINKGADVNLRGSKDNATALHDAAATGNVEIANVXXXXXXXXNAQDINGYSPLMCAVSNNHTETAESLINQGADVKLCCSKDKRMALHVAAATGNVKIAKVLLSNGADINAQDINGYSPLMFAVIKNHTETAEFLINQGADVNLRGSKDNRTALQAAAATGNV 3641
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9277.21456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT1_ECTSI3.610e-7369.77Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KQW0_9PHAE5.370e-7261.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H2XQR8_CIOIN6.710e-1231.02SAM domain-containing protein n=4 Tax=Ciona intest... [more]
A0A3S0Z389_ELYCH7.500e-1029.06Uncharacterized protein (Fragment) n=1 Tax=Elysia ... [more]
UPI001D040E212.410e-931.11uncharacterized protein n=1 Tax=Morchella sextelat... [more]
F4P4C6_BATDJ3.010e-927.32T-box domain-containing protein n=2 Tax=Batrachoch... [more]
A0A2V8GKU7_9BACT7.190e-931.71Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
D0NED6_PHYIT9.280e-928.37Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
G4Z3F6_PHYSP9.510e-928.50Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A8J9UWK9_BRAAE2.120e-826.50Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9277contigM-pyrifera_M_contig9277:142..6148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.9
Seed ortholog evalue2.4e-64
Seed eggNOG ortholog2880.D8LTT1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size594
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9277.21456.1prot_M-pyrifera_M_contig9277.21456.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9277 151..6148 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.747635-UTR-M-pyrifera_M_contig9277:141..1501622816840.747635-UTR-M-pyrifera_M_contig9277:141..150Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9277 142..150 +
1692278209.5874536-UTR-M-pyrifera_M_contig9277:141..1501692278209.5874536-UTR-M-pyrifera_M_contig9277:141..150Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9277 142..150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.7599952-CDS-M-pyrifera_M_contig9277:150..2581622816840.7599952-CDS-M-pyrifera_M_contig9277:150..258Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9277 151..258 +
1692278209.6010125-CDS-M-pyrifera_M_contig9277:150..2581692278209.6010125-CDS-M-pyrifera_M_contig9277:150..258Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9277 151..258 +
1622816840.7703867-CDS-M-pyrifera_M_contig9277:1537..16881622816840.7703867-CDS-M-pyrifera_M_contig9277:1537..1688Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9277 1538..1688 +
1692278209.6094904-CDS-M-pyrifera_M_contig9277:1537..16881692278209.6094904-CDS-M-pyrifera_M_contig9277:1537..1688Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9277 1538..1688 +
1622816840.780769-CDS-M-pyrifera_M_contig9277:3070..32161622816840.780769-CDS-M-pyrifera_M_contig9277:3070..3216Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9277 3071..3216 +
1692278209.618168-CDS-M-pyrifera_M_contig9277:3070..32161692278209.618168-CDS-M-pyrifera_M_contig9277:3070..3216Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9277 3071..3216 +
1622816840.7911193-CDS-M-pyrifera_M_contig9277:4933..50071622816840.7911193-CDS-M-pyrifera_M_contig9277:4933..5007Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9277 4934..5007 +
1692278209.627383-CDS-M-pyrifera_M_contig9277:4933..50071692278209.627383-CDS-M-pyrifera_M_contig9277:4933..5007Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9277 4934..5007 +
1622816840.8031383-CDS-M-pyrifera_M_contig9277:6042..61481622816840.8031383-CDS-M-pyrifera_M_contig9277:6042..6148Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9277 6043..6148 +
1692278209.6434355-CDS-M-pyrifera_M_contig9277:6042..61481692278209.6434355-CDS-M-pyrifera_M_contig9277:6042..6148Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9277 6043..6148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9277.21456.1

>prot_M-pyrifera_M_contig9277.21456.1 ID=prot_M-pyrifera_M_contig9277.21456.1|Name=mRNA_M-pyrifera_M_contig9277.21456.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
MLEHGARHLLQSVNSDMWTPLMVACDAGSLETVRVLVEAGADSGVFNKDG
LTALDVASSRNHLVIECYLRTEGAFSSLEFWGAADTGDSAAVAKLLKANG
HLVGALDPDGRTALLRTCVGGHLKVARILVEGGADVDFQDASGLSPLSVS
VMLGDVALARYLVQAGGARLSSKSKTGWTPLMQAVAKGDLTMTR*
back to top

mRNA from alignment at M-pyrifera_M_contig9277:142..6148+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9277.21456.1 ID=mRNA_M-pyrifera_M_contig9277.21456.1|Name=mRNA_M-pyrifera_M_contig9277.21456.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6007bp|location=Sequence derived from alignment at M-pyrifera_M_contig9277:142..6148+ (Macrocystis pyrifera P11B4 male)
TTGAGGGTGATGCTGGAACACGGAGCGCGGCACCTCCTGCAGTCGGTGAA
CTCGGACATGTGGACCCCGCTCATGGTGGCTTGCGATGCCGGAAGCCTGG
AGACCGTCCGAGTGCTGGTGAGCTGTAGCTTCGCTTCCGGCGAGCGAATG
CGAGGTTCGAATGTTTAGGGCTGCCTGAGGGGTCGGATCATAACTCGCGG
CTCGGGTTAGGTGGGGCCACCTAACCCGACCCGACGCGAATAGACCCAAT
CCTTCAGATTTCGAATACCTCTTGACCCGAGCTGATCAGATCCGACCCGA
TCCGACCCGATCCGACCCGATCCGACCCGATCCGACCCGACCCGACCCGA
CCCGACCCGACCCGATCCGACACGACCCGACCCGACCCAACCCAACCCAA
CCCAACCCGACCCGACCCGACCCGACCCAACCCAGCCCGACCCAACCCGA
CCCTGCCCGTAAAGTTTTGAAGACCTCCTGACACGTGAACAGCCCTGTGC
ATTTTGACGGCACAAAAAAATAGGGCATGCCTTACTTTCGAGCTGTCCGA
AGCGTCCGCCCCCTGAAAATCAAGACACACCGAGAGAGGGGAGTACACAC
GCAGCAGCTTTCGGGTAGGTTCAGGTTGAGTTTTTGTGTGTGTTGGACAT
CGAACGAGAATCGAGTTCGATATGTACGATACTGACAAACAAAACTAAAA
AAATCGATAGAATACCGATGTATATATATATTTTTTAAATCGATACGATT
TCGATAGTTGATACGATATCGAACTTAAAAAAAGACACCGAAAAACATGC
CAGGGGGTAGAGGTGCAATACGCGGTCGATACGTACGACCTATCGAAGAA
GGTCGATACTTCGAAAGGTATTGAAGAATTTTCGATGCGATAACCCGACA
CTAGCTAGTTGGTGCATACCTTCCGCCAACACACACAAGTTGACCACAAT
CAACGGAAGTCCTGCTGTGCGCGGTTGTCCCGAATACAGCTGCACGGTAC
CACCATGTAACACGGCGACCTAAAATAACACCAGGTAGGGCGTTAAACTG
CTGCAAAAATCATCCCCACGCTTGATTTGAAGTGGTTTGTGCCCAAAAAG
TGGTTGGGGTTGTACAAGGGACCTCCAATCCTGTAGTCGGACGACGAAAC
CCAACAGAAGGGATACTTCGCCCCAGGTATATCCCGACGGCAGATGCGAT
GCCGAGATGATCTACAGCCCGATCGCGATCTGTTCGATGTTGCACAAGCC
ACTGCCATCATTTCGGTGGGGAAGTATTAATCAGAACCAAATATGCTGTT
TGAACAGAGGGGTATTCATGTTTTTTTTGGGGTCCATCTTGGGGATCTGA
TTACTCTGCGTGATTTGTGCACTACTGCTGTGGCCCTCCGCAACAGGTGG
AAGCCGGCGCGGACTCGGGCGTGTTCAACAAGGACGGCTTAACGGCTCTT
GACGTGGCCTCCAGCCGCAACCATCTCGTAATCGAGTGCTACCTCAGGAC
GGAAGGGGCTTTCAGCTCGCTAGAGTTTTGGGGCGCGGCTGACACAGGTT
AGACTCGTCCTAGGTTTGAGGTAGGGGGGGAGGGGGGCGGGGGAGGAGGG
GCGTGGTCATCTGCTGCTTTCCTTAGCCCTCTGACCATTGACCACGCGTC
CCTTTCGAGAGGAGGAGAGGGGGGGGTGGCACTCATGGCATGCATGGCCG
TAGTCGTATGACCGTGGACTCTCGCATCCCTACAATGCCCGGGACGGAGC
ACTGTCGGGGTTTCACCGACGAGGCAGACACCGGGGGGAGTGGGGGGGGG
TGATCACGAACGCCTTTTCTATGAGACGTTTTTTCCTGCTTCGTCCAATC
TCGTCCGTGTTACGTCTGCAAGGTTAAGGCCGAGGCCGAAAGCAGAAGTT
GAAAAAAACTCAGGAAAATGGGAAACTACGAGTGCGTACCGTACTTGTAG
AAAGAGGGCAGTCACTGACCCGCAGGATTCACGCGAGGTCATATACACTC
TTACGAAGCGCGCGATCGAACATTTTTCACACAGCTTGGAAATGTGAGTT
TCCAGAAAAAAATATCGTACAGCTGCGGTGCTTTACTTATTCTTTTTTAT
CGCCTCGAATTCAGAAAATGAATAATCCCCCCCCTAGAATAGTGAAACAT
CACTGTAAAAGAGGTCTGGAAGCGAGAGGTAGTTCGTTTGGTGCTCTTGT
GAGATTCGTATGTCATCACCGTCGGTGGTTCGTGATGTGAAAGTTAACGG
CCAGAAGGGGAAGAGAGATGTTTGCGCATGAATATACTTGTCTGTCGAGC
AGGCAAGCAGTGGCAGTGGCCACATTGACACAACCGGGGCATTCTGCTCA
TTTTTTTTTTTGTTCCCGACCGTTGCGATGCCTTCGATAAAACGGACCGC
CTATTTCGTTTTTCCTGTGTACAGTAGTCCTTTCGAAGCATTGGTTGGTT
GATTGATGGATTGGTTGATTGATTAGTTGATTAGTTGATTGATTGATTGA
TTGATGGATGGATTGATTGATTGTTGATGGATGGGTTGATAGATTGATTG
ATTGATTGGTTGGTAGATTGGTTGATTGATTAATTGCTTGGCTGGTTGAT
TGATTGATCGTTCGATTGATTGGTTGGTTGATTGATTGATGGATTGGTTG
ATTGCTTGTTTAATTATTTGACCGATTGTTCGATTGATTGATTGATCTCG
CTGATTGACGGAATTCCTTGGTTTATTCGGTTCGCTTTGTCCAGGCGATT
GAGCAGCGGTCGCGAAACTCCTGAAAGCCAACGGACACCCTAGTCAGACA
CCTAGACCCAGATGGCTGATTGGTTAGTTTGGTCCGGTTGATTCATCGAT
TAGTTTTTCGATTGATTGATTGACCGATCGATCGTTGTGTTGATCTCTCT
CATTGGTTTATTCGGTCCGCTTTGCACAGGCGATTCAGCAGCGGTCGCGA
AGCTCTTGAAAGCCAACGGGCACCTTGTCGGAGCCCTAGACCCAGATGGC
CGCACGGCCCTCCTCAGGACCTGCGTGGGGGGTCATCTGAAGGTGGCCAG
GATCCTCGTCGAAGGCGGTGCGGATGTGAGTAAGCGGCACATCGGACAGA
CCAGATTCGATCCGGGCAGTTATATCTCCAGTATCACTCTGCGCGGAAAC
ATAAGAACCCTTGGGTATTCACATTACTGTACAAACTATCCTTATATTTA
CGACCAGAGTAGTATTCATCTGAGCGCTTCACGGGTCATGACTCGACCCA
AGGGTCGGGTCAGAAAGTTTACTAAATACCACAGACCAGGTCGGGTCGGT
TCGGGTCGAGTCGGGTCGCGTTGGGTCGGATCGGATCGGGTCGGGTCGGG
TCGGTCGGGTCGGGTCGGGTCGGGTCAGGTTGGGTCAGGTCGGGTCAGGT
CGGGTCGGGTCGGGTCAGGAGGTTTTCAAACTCTCGCAGGTAGGGTCGGG
TCACCCTCGAGGTATGACCCGACCCGTGAACACCCCTGCTACACGGATAA
ACTGTTGGCCGGAGGTGGAGAATATATATGTATGATACGGCTGTTGCACA
ACGCCTCATATCTGCAAACAATCTGGGGTCTGGATCTTCAGATACAGTTT
GTAGGTCGTGATTTTTCCGAAGTGAGGCGTAAACCCGTTTACTTCATACA
GTACGCCACGACGGTGCTTAAGAAATCGGGAGTGAAGAAATTGATACCTG
TACTTAAGAAAACCGGATTTAAGATGCTTTTAGTGGAGGAATTGAGGAAT
AGGGAGTTAAGAGAGCAAGCTATATATAAAAAATTGGCGTGTAAGAATGT
GTGAGTTAAGAAATTGGGAGTGAAGAAATTGAGAGGCAGTACGTTAAGGC
GGCCTAAATTGGGGTTTAAGAACGTGGGAGTTCAGAAATTAGGGTGCCAT
AAATTGGGACTCCACAATGTGAGAGACAACCAATTGGGAGTTTTACTACC
GTAGCACCATGCTTGAAAAAAATAGCGGCAGGTTACCGTATCACACGTGC
GACAAGACTAACCCCCCCCCCCATCCCCCCTTGAACGAATTTCAAAACTC
TGATTTTCTCTTCACATAACGGCGAGAGTGCAGACGCCGAGCGTTGCGTT
TATGGAAAGATACCTCAACGAAGATATCTCAACAAAGATATCTCCCCACA
GTCGCCCTTTTCGTTGGGTACCCCCCCCCTGAAGGCTTGTCTGGGAGAAA
ATTGCCTCTGAAATTCGTCCCAGGGTGTGTGCTATGTTACGCGTTGTAAG
GTGGGAATATCGGCAGTTTATTTATATTTATACCTGGTATAAAATATATA
ATATATATAAATATATATTAGGTATATGATATATATAAATATATATTATA
TATTTTATACCAGTATATATTATCTATCCGGCGTGCGAAGTGTTGGGAGG
TGAGGGACGTTGAACTTTATGCCAGCGGACGAGACAGGCGATGGATCGAT
CGACGGCGCCAAAACACGTGCCTGGTACAATTATACCGGTAGGTAGCGTT
CCGTTCCAGCTAACGGGGTGTATACCAGGTATAATAGTAAGAGTTCCCGT
CCGTTCTAACAGAAAACCTAAAAAATGAACCCGGCAGCAACAAACAGCAA
CAACCAACAACCAACTACCCCACATGTATATATATATATATTTATTTATT
TTTGTCGGTCGGGTTGACTTTCAGGACACTAAGCACAAAATAAAAACACA
AACAAAATCGGACTACAACATCATCAACAACATCAACAACATCAACAATA
ACAACAGAAACCAGCCCCAAACTTGTCATTTGTGTCGGCCAGGTGGACTT
CCAGGACGCGTCGGGATTGTCCCCTCTCAGCGTATCCGTTATGCTCGGAG
ACGTGGCGCTCGCCAGGTGAGCCAAGTAGTGTCAATGGTGTACCTGGTAT
AGTACAACTCTGGGGCGGAAATGCGAGGACTCATATTCATGCCCCAACGC
TTCTCTAACTTTCCGTCCTGAGTGATACGTTCGACGCGGCCCAGCTTAGA
CAAAAATGAACGATTTTTCTTCATTAAAGCTTATTTCCGATAACTTTCTT
GGTGCCCTGTTCCTTACGACGCGTCCTACGATAAAGGTAGCTCATTTCCG
CCAAAATGCTTTCTGAGTGACGGGGCTCCTTCACCCCTTTAGTACCGCAG
TCCCGATTTGGAGACAAACCAGTCTAATTCCAAATGATTTGTCCCCAAAA
CGGGAATGCGGTACTAAAAGGGTTAACCCGAAATCGTCGGAGTGCCAATC
TTGTTTTCGAAAAATGGCGTTTTTTGCGTATACTTGTGCCATGAGATTGC
TGATCGGGGCGCAATTTGATTTTTGCTGAAGTCAGTTTTCGGGTGAGGTA
TGGAGCTCCGTTAAGGTAAAATGAAGCGCCTCAGAAGAAAAATTAGGGTG
ACCTCTATGGTAGAGCGTCTCTTACCTTCCTCCCCCCTACACCTGAAAAT
AAATGAACCCATTGGAGCTGTCATCCATGTGCAAGCCTGCCTCACAGGCA
GTTCTTAGTAAGATGCAGCTCACCCTTCATGCGACTCGCCGAACTCCTCA
AGGAGCTTCGCGCTTGGTGCAAGTAAATGTCTGCCTGGTCGGTGAAAACC
CGACATTCTCCGTCCCGGCATTGTAGGGATGCGAGGGTCTATTGCCATAC
GACTACGGCCATGCACGATCATGAATACCCCCCCACACACACACACACAA
CACCGCTCCTAAATCCCCACCCCCAACCCCCACTCCCACCGTGATTGATC
AACTCCCGCCCCTCCCGAACCCCATCCCTCCACCCCACCTCCTACAACAC
TCTCCCTCAACCCCCACCCCCAACTCTCACTTCCAACCCCCACTCCAACC
CCCTGACATGTTCAACTCGGAAATGCGCCAACTCGGAATGCGTCGGACAA
GGTACCTGGTTCAGGCCGGCGGCGCTCGACTTTCGTCGAAGAGCAAGACC
GGGTGGACCCCTCTCATGCAAGCCGTCGCGAAGGGAGACCTCACCATGAC
CCGGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9277:142..6148+

>mRNA_M-pyrifera_M_contig9277.21456.1 ID=mRNA_M-pyrifera_M_contig9277.21456.1|Name=mRNA_M-pyrifera_M_contig9277.21456.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig9277:142..6148+ (Macrocystis pyrifera P11B4 male)
ATGCTGGAACACGGAGCGCGGCACCTCCTGCAGTCGGTGAACTCGGACAT
GTGGACCCCGCTCATGGTGGCTTGCGATGCCGGAAGCCTGGAGACCGTCC
GAGTGCTGATGCTGGAACACGGAGCGCGGCACCTCCTGCAGTCGGTGAAC
TCGGACATGTGGACCCCGCTCATGGTGGCTTGCGATGCCGGAAGCCTGGA
GACCGTCCGAGTGCTGGTGGAAGCCGGCGCGGACTCGGGCGTGTTCAACA
AGGACGGCTTAACGGCTCTTGACGTGGCCTCCAGCCGCAACCATCTCGTA
ATCGAGTGCTACCTCAGGACGGAAGGGGCTTTCAGCTCGCTAGAGTTTTG
GGGCGCGGCTGACACAGGTGGAAGCCGGCGCGGACTCGGGCGTGTTCAAC
AAGGACGGCTTAACGGCTCTTGACGTGGCCTCCAGCCGCAACCATCTCGT
AATCGAGTGCTACCTCAGGACGGAAGGGGCTTTCAGCTCGCTAGAGTTTT
GGGGCGCGGCTGACACAGGCGATTCAGCAGCGGTCGCGAAGCTCTTGAAA
GCCAACGGGCACCTTGTCGGAGCCCTAGACCCAGATGGCCGCACGGCCCT
CCTCAGGACCTGCGTGGGGGGTCATCTGAAGGTGGCCAGGATCCTCGTCG
AAGGCGGTGCGGATGCGATTCAGCAGCGGTCGCGAAGCTCTTGAAAGCCA
ACGGGCACCTTGTCGGAGCCCTAGACCCAGATGGCCGCACGGCCCTCCTC
AGGACCTGCGTGGGGGGTCATCTGAAGGTGGCCAGGATCCTCGTCGAAGG
CGGTGCGGATGTGGACTTCCAGGACGCGTCGGGATTGTCCCCTCTCAGCG
TATCCGTTATGCTCGGAGACGTGGCGCTCGCCAGGTGGACTTCCAGGACG
CGTCGGGATTGTCCCCTCTCAGCGTATCCGTTATGCTCGGAGACGTGGCG
CTCGCCAGGTACCTGGTTCAGGCCGGCGGCGCTCGACTTTCGTCGAAGAG
CAAGACCGGGTGGACCCCTCTCATGCAAGCCGTCGCGAAGGGAGACCTCA
CCATGACCCGGTAAGTACCTGGTTCAGGCCGGCGGCGCTCGACTTTCGTC
GAAGAGCAAGACCGGGTGGACCCCTCTCATGCAAGCCGTCGCGAAGGGAG
ACCTCACCATGACCCGGTAA
back to top