mRNA_M-pyrifera_M_contig9270.21443.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9270.21443.1
Unique NamemRNA_M-pyrifera_M_contig9270.21443.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9270.21443.1 vs. uniprot
Match: D8LSB6_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB6_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 6.650e-120
Identity = 283/676 (41.86%), Postives = 346/676 (51.18%), Query Frame = 1
Query:    1 GIFRWITVGTAGLVTLSNLVGG-KHQIPNHLRSWMDAARVCAREAD----------IAAT---------------AAKSAAVPAGXXXXXXXXXXXXXKRKSKPHSLPQSGLAGMLKFLGCPKDPTTTQRTRRGVNAVMNIAQCVRCLVCTGVSMPVTSRVTPVWGPTGGYEGVRHDELP----------VRPSSGGVTSN-FIAAGGXXXXXXXXXXXXXXXXXXXXXXXNVTTPVRGVAGDDVRRDLTDDKRTKTEDTPAPAQVTFAPVAAGALVVGXXXXXXXXXXXXXXXXXXXXXXTEPQXXXXXXXXXXXXRGVXXXXXXDGV--------PEWRRSMPLDALAPNYLDYFVRERERKFYKSAGILPYYRDPTTGAVSILIGSELRKNKLVLSCLAGKREDNDAGPEHTAWREFWEESGKVLGDYERVTFLTACFEGRARAMWVQGAKMAVLACELSSPAFVDLPHKYSRGGGSVDKADTSMLALHWVGAADLYGACNEEGGKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXVPQQR----PQXXXRXXXXGXXXXXXXXXXXQQPQXXXXXXQDWQRS---GGDRWRFNGPGHENQEQ------VVVANEMPQXXXXXXXXXXDLPPQMVATPIEPYPLLKTLIADDAFRQFFADLAAAGNKDKPRFVP 1854
            G FRW+    +G   L  L+G  K Q+P+HLRSW DAAR+C  EA+           AAT               A +S +  A XX           K+ +  HSLPQSGL GMLKFLGCPK+P    RTRRG+N V ++AQCV C+V  G+ +PVTSR+T  W   GGY G  H+EL           VR    G+ +   +AA G                       N T  + G A        T  +  KT+                     XXXXXX                                 G        GV        P WR+++P+++LAP+YLDYFVRERER++YKSAGILPY RDP++G V +L+GSE+RKNKLV+SCL GKRED+DAGPEHTAWREFWEESGKVLGD ER  FLT CFEGRARAMW+Q AKMAV+ACEL SP  V LP ++  G   VDK DTSM+ALHWV A +L+ ACN+ GG VV                           VPQQ     PQXXX XXXX XXXXX      +         +  QR    GG R                      + ++P   XXXXX    + PQ+V T +EPYPLLK+L+AD AF+ FFA LAAAGN ++ RFVP
Sbjct:   20 GNFRWVVTHGSGFHHLPELIGQHKLQLPDHLRSWTDAARMCGWEAERLNVGIAAYNAAATGQEGSGXXXXXXXRHAPRSGSRGAXXXAESAGARSRGRKKPTIKHSLPQSGLPGMLKFLGCPKEPDIAHRTRRGMNVVESLAQCVVCMVRLGIPIPVTSRITQEWAGGGGYAGCHHNELSIDQPQVVLKVVRYGPDGLPAEGAVAAAGTGPVVRLGPQGVMGGGPLIMNAPNPTAGINGSASGAP----TQQQPQKTKKXXXXXXXXXXXXXXXXXXXXXXXXXXGPAQHQHQQHQLRPGARPGDGLGGGPQWQNGALGGGWVGGAAGVGGGRGQPMPHWRQNVPINSLAPDYLDYFVRERERQYYKSAGILPYRRDPSSGEVWVLVGSEIRKNKLVVSCLGGKREDSDAGPEHTAWREFWEESGKVLGDDERANFLTTCFEGRARAMWMQSAKMAVIACELGSPDLVSLPRRFGLGDPGVDKRDTSMIALHWVSATELHNACNKRGGTVVVWGPA----------------------VPQQSVAPSPQXXXXXXXXXXXXXXNGTGEERPGGLSRRQQKKLQREAGRGGGRXXXXXXXXXXXXXXXXXXXTAASLQLPLHQXXXXXQVHPMAPQIVPTAVEPYPLLKSLVADQAFQLFFAQLAAAGNSNQ-RFVP 668          
BLAST of mRNA_M-pyrifera_M_contig9270.21443.1 vs. uniprot
Match: A0A6H5KXJ7_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ7_9PHAE)

HSP 1 Score: 384 bits (985), Expect = 2.390e-118
Identity = 300/680 (44.12%), Postives = 361/680 (53.09%), Query Frame = 1
Query:    1 GIFRWITVGTAGLVTLSNLVGG-KHQIPNHLRSWMDAARVCAREAD-----IAATAAKSAA------------VPAGXXXXXXXXXXXXXKR---KSKP---HSLPQSGLAGMLKFLGCPKDPTTTQRTRRGVNAVMNIAQCVRCLVCTGVSMPVTSRVTPVWGPTGGYEGVRHDELP----------VRPSSGGV-TSNFIAAGGXXXXXXXXXXXXXXXXXXXXXXXNVTTPVRGVAGDDVRRDLTDDKRTKTEDTPAPAQVTFAPVAAGA--LVVGXXXXXXXXXXXXXXXXXXXXXXTEPQXXXXXXXXXXXXRGVXXXXXX-DGVPEWRRSMPLDALAPNYLDYFVRERERKFYKSAGILPYYRDPTTGAVSILIGSELRKNKLVLSCLAGKREDNDAGPEHTAWREFWEESGKVLGDYERVTFLTACFEGRARAMWVQGAKMAVLACELSSPAFVDLPHKYSRGGGSVDKADTSMLALHWVGAADLYGACNEEGGKVVXXXXXXXXXXXXXXXXXXXXXXXXXXXVPQQRPQXXXRXXXXGXXXXXXXXXXXQQPQXXXXXXQDWQRS-------GGDRWRF-----------------NGPGHENQEQVVVANEMPQXXXXXXXXXXDLPPQMVATPIEPYPLLKTLIADDAFRQFFADLAAAGNKDKPRFVP 1854
            G FRW+    +G   L  L+G  K Q+P+HLRSW DAAR+C  EA+     IAA  A++               P      XXXXXXXX  R   K KP   HSLPQSGL GMLKFLGCPK+P    RTRRG+  V ++AQCV C+V  G+ +PVTSR+T  W   GGY G  HDEL           VR    G+     +AA G                       N T  + G A     +      + K +   A   V+   V A     V G    XXXXXX              PQ                        +P WR++ P+++LAP+YLDYFVRERER++YKSAGILPY RDP++G V +L+GSE+RKNKLV+SCL GKRED+DAGPEHTAWREFWEESGKVLGD ER  FLT CFEGRARAMW+Q AKMAV+ACEL SP  V LP ++  GG  VDK DTSM+ALHW+ A +L+ ACN+ GG VV                           VPQQ   XXX XXXX XXXXXXXXX     +      +  Q+        GG R                    NG     Q  +        XXXXXXXX   + PQ+V T +EPYPLLK+L+AD AF+ FFA LAAAGN ++ RFVP
Sbjct:  295 GNFRWVVTHGSGFHHLPELIGQHKLQLPDHLRSWTDAARMCGWEAERLNVRIAAYNAEATGQGXXXXXXXXRCAPRSGSRGXXXXXXXXGARSRGKKKPMIKHSLPQSGLPGMLKFLGCPKEPDIAHRTRRGMKVVESLAQCVVCMVRLGIPIPVTSRITQEWAGGGGYAGCHHDELSIDEPQVVLKVVRYGPDGLPVDGAVAAAGTGPIVRLGPQVVVGGGALIVNAPNPTAGINGSASGAPTQQQPHKAKKKNKRGSAHNGVSANGVYAEGPPFVGGPAQQXXXXXXLGPGARPGDGLGVGPQLQNGASGGGWVGEAAGVGGGRGQPMPHWRQNAPINSLAPDYLDYFVRERERQYYKSAGILPYRRDPSSGEVWVLVGSEIRKNKLVVSCLGGKREDSDAGPEHTAWREFWEESGKVLGDDERANFLTTCFEGRARAMWIQSAKMAVIACELGSPDLVSLPRRFGLGGPGVDKRDTSMIALHWISATELHNACNKRGGTVVVWGPA----------------------VPQQSAAXXXXXXXXXXXXXXXXXXNGTGEERPGGLSRRQQKKLQREAGRGGGRGSXXXXXXXXXXXXXXXXXGNGTAASLQLPLHQQXXXXXXXXXXXXXVHPMAPQIVPTAVEPYPLLKSLVADQAFQLFFAQLAAAGNSNQ-RFVP 951          
BLAST of mRNA_M-pyrifera_M_contig9270.21443.1 vs. uniprot
Match: A0A836CHE9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHE9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.340e-19
Identity = 63/184 (34.24%), Postives = 87/184 (47.28%), Query Frame = 1
Query:  904 DALAPNYLDYFVRERERKFYKSAGILPYYRDPTT--GAVSILIGSELRKNKLVLSCLAGKREDNDAGPEHTAWREFWEESGKVLGDYERVTFLTACFEGRARAMWVQGAKMAV------------LACELSSPAFVDLPHKY------------SRGGGSVDKADTSMLALHWVGAADLYGACN 1377
            D L+ NY    +R RE  +YK+AGILP    P    G  ++L+G E+RK    +  + GKRED D  P  TAWRE WEESGKVL    R  F+ A   G AR +WV+  K  +            LA   +  A                    +R G + D+++T++L L WV   +L  A +
Sbjct:  131 DLLSSNYAGPALRPREADWYKAAGILPLATLPPERGGCAAVLLGVEMRKGAQCIGHMGGKREDRDGRPAETAWRETWEESGKVLTREARQAFMAATDSGAARVLWVRDCKQVLYAYRVPVEWGDALAVAFNGAAAXXXXXXXXXXXXXGSGVGPTRAGATADRSNTTLLELRWVPVRELEAAAS 314          
BLAST of mRNA_M-pyrifera_M_contig9270.21443.1 vs. uniprot
Match: A0A836CI15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI15_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.930e-15
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  955 KFYKSAGILP--YYRDPTTGAVSILIGSELRKNKLVLSCLAGKREDNDAGPEHTAWREFWEESGKVLGDYERVTFLTACFEGRARAMWVQGAKMAV 1236
            ++YK+AGILP  +  +   G +++L+  E+RK K +L  + GKRE  D GP  TAWRE WEESGKVL    R TFL A   G  R +WV   + A+
Sbjct:   73 EYYKAAGILPLAWLPEDRGGHLAVLLAMEVRKGKRLLGHMGGKREAADKGPAFTAWREAWEESGKVLSSNARATFLAAAESGDTRVLWVPECEQAI 168          
BLAST of mRNA_M-pyrifera_M_contig9270.21443.1 vs. uniprot
Match: L8GIW6_ACACA (Hydrolase, NUDIX domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIW6_ACACA)

HSP 1 Score: 63.9 bits (154), Expect = 4.030e-7
Identity = 55/206 (26.70%), Postives = 84/206 (40.78%), Query Frame = 1
Query:  916 PNYLDYFVRERERKFYKSAGILP--YYRDP-----------------------------------------------TTGAVSI---LIGSELRK-----NKLVLSCLAGKREDNDAGPEHTAWREFWEESGKVLGDYERVTFLTACFEG--RARAMWVQGAKMAVLACELSSPA---FVDLPHKYSRGGGSVDKADTSMLALHWV 1347
            P+YL   ++E E + +K+AGILP  ++  P                                               T G V +   L+G E R+     +++ ++   GKRED+D     TAWREFWEE+G++L D +   FL  C +G  R R +W    K  +    L  PA      L  +Y +      +  + M +LHWV
Sbjct:   61 PSYLGIHLKEDEERSFKAAGILPIAFFTSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATKGGVPVPYVLLGCETRRKQVKTDEVYINLFGGKREDSDGSAAETAWREFWEETGRLLPD-QAQPFLDHCRDGADRRRVLWFAPGKYVLFLYHLPYPAPEWTTKLAEQYRQL--ETREEGSEMDSLHWV 263          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9270.21443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSB6_ECTSI6.650e-12041.86Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A6H5KXJ7_9PHAE2.390e-11844.12Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A836CHE9_9STRA7.340e-1934.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CI15_9STRA2.930e-1545.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L8GIW6_ACACA4.030e-726.70Hydrolase, NUDIX domain containing protein n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9270contigM-pyrifera_M_contig9270:2837..9625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-21_003100.1
Exons5
Model size1854
Cds size1854
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9270.21443.1prot_M-pyrifera_M_contig9270.21443.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9270 2837..9625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.0913713-CDS-M-pyrifera_M_contig9270:2836..34691622816840.0913713-CDS-M-pyrifera_M_contig9270:2836..3469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9270 2837..3469 +
1692278209.2380295-CDS-M-pyrifera_M_contig9270:2836..34691692278209.2380295-CDS-M-pyrifera_M_contig9270:2836..3469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9270 2837..3469 +
1622816840.1072304-CDS-M-pyrifera_M_contig9270:5647..60031622816840.1072304-CDS-M-pyrifera_M_contig9270:5647..6003Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9270 5648..6003 +
1692278209.249039-CDS-M-pyrifera_M_contig9270:5647..60031692278209.249039-CDS-M-pyrifera_M_contig9270:5647..6003Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9270 5648..6003 +
1622816840.1218424-CDS-M-pyrifera_M_contig9270:6862..70161622816840.1218424-CDS-M-pyrifera_M_contig9270:6862..7016Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9270 6863..7016 +
1692278209.2648962-CDS-M-pyrifera_M_contig9270:6862..70161692278209.2648962-CDS-M-pyrifera_M_contig9270:6862..7016Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9270 6863..7016 +
1622816840.1371086-CDS-M-pyrifera_M_contig9270:7471..80111622816840.1371086-CDS-M-pyrifera_M_contig9270:7471..8011Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9270 7472..8011 +
1692278209.2749577-CDS-M-pyrifera_M_contig9270:7471..80111692278209.2749577-CDS-M-pyrifera_M_contig9270:7471..8011Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9270 7472..8011 +
1622816840.152746-CDS-M-pyrifera_M_contig9270:9454..96251622816840.152746-CDS-M-pyrifera_M_contig9270:9454..9625Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9270 9455..9625 +
1692278209.2863493-CDS-M-pyrifera_M_contig9270:9454..96251692278209.2863493-CDS-M-pyrifera_M_contig9270:9454..9625Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9270 9455..9625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9270.21443.1

>prot_M-pyrifera_M_contig9270.21443.1 ID=prot_M-pyrifera_M_contig9270.21443.1|Name=mRNA_M-pyrifera_M_contig9270.21443.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=618bp
GIFRWITVGTAGLVTLSNLVGGKHQIPNHLRSWMDAARVCAREADIAATA
AKSAAVPAGGGGGGKGNQHQSKKRKSKPHSLPQSGLAGMLKFLGCPKDPT
TTQRTRRGVNAVMNIAQCVRCLVCTGVSMPVTSRVTPVWGPTGGYEGVRH
DELPVRPSSGGVTSNFIAAGGGVSGGARAGADGKGGGGGGGGGGNVTTPV
RGVAGDDVRRDLTDDKRTKTEDTPAPAQVTFAPVAAGALVVGGHGGGEAT
SNKTTGGGWGGGGGTEPQGWGGARGGGGGGRGVGGSGGGDGVPEWRRSMP
LDALAPNYLDYFVRERERKFYKSAGILPYYRDPTTGAVSILIGSELRKNK
LVLSCLAGKREDNDAGPEHTAWREFWEESGKVLGDYERVTFLTACFEGRA
RAMWVQGAKMAVLACELSSPAFVDLPHKYSRGGGSVDKADTSMLALHWVG
AADLYGACNEEGGKVVVWGPPPPQPKAAALAASAAAQPGGGAIVPQQRPQ
QQQRQQQQGQQQQGQQQQGQQQPQPQPQPQQDWQRSGGDRWRFNGPGHEN
QEQVVVANEMPQQQQQPQQQQQDLPPQMVATPIEPYPLLKTLIADDAFRQ
FFADLAAAGNKDKPRFVP
back to top

mRNA from alignment at M-pyrifera_M_contig9270:2837..9625+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9270.21443.1 ID=mRNA_M-pyrifera_M_contig9270.21443.1|Name=mRNA_M-pyrifera_M_contig9270.21443.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6789bp|location=Sequence derived from alignment at M-pyrifera_M_contig9270:2837..9625+ (Macrocystis pyrifera P11B4 male)
GGAATTTTCAGGTGGATCACCGTTGGAACAGCCGGTCTGGTCACCCTCTC GAACTTGGTAGGGGGGAAACACCAGATACCGAACCACCTGCGCTCCTGGA TGGACGCGGCGCGCGTGTGCGCCCGCGAAGCAGACATAGCTGCTACTGCC GCCAAGTCGGCAGCAGTCCCAGCCGGCGGCGGCGGGGGGGGCAAAGGTAA CCAGCACCAGTCGAAGAAACGCAAGTCGAAGCCGCACTCCCTCCCCCAGT CGGGTCTGGCGGGCATGCTCAAGTTTCTGGGGTGCCCGAAGGACCCGACC ACCACGCAGCGGACGCGGCGCGGCGTCAACGCGGTGATGAACATCGCCCA GTGCGTGCGATGCCTCGTGTGCACCGGTGTGTCCATGCCGGTGACCTCGC GGGTCACTCCGGTGTGGGGACCCACGGGGGGCTACGAAGGCGTCCGCCAC GATGAGCTCCCGGTCCGTCCCTCGTCGGGGGGGGTTACGAGTAACTTCAT AGCCGCCGGCGGTGGTGTCAGCGGTGGGGCGCGGGCTGGGGCGGACGGAA AGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAATGTCACGACCCCTGTG CGGGGCGTTGCGGGCGATGACGTCCGTCGCGATGTGCTCCCGGTCGAGCC CTCGCCGGGGGTACTCCCTGGTGCCTATATTGCCGGCGGCGGTGGTGGCA GCGCCGGGGCGGGGGTTGGGGTGGGCGGAGGAGGAGACAGAGGGGCTGGA GGCAAGAGTAGTGTTACGAACCCGGCGTGGGGAGGTGCGGCCGATGGCGT CCGTCGCAATGAGCCGCCGGTCGAGCCCTCGCCGGGCGTACTCCCTGGTG CCTATATAGCCGGCGGCGGTGGTGGCAGCGCCGGGGCGGGGGTTGGGGTG GGCGCAGGAGGAGACAGAGGGACAGGAGGCAAGAGTAGTGTTACGACCCC GGTGTGGGGAGGTGCGGCCGATGGCGTCCGTCGCAATGAGCCGCCGGTCG AGCCCACATCGGGGGTGCTTCCTGGTGCCTATATAGCCGGCGGTGGTGGT GGCGCCGGCGGGGCGGGGGTTGGGATGGCGGGAGGGATGGGAGAAGGAGG AAGCAGAGGTGGTGTTTCGACCCCGGTGTGGGGAGATGCGAGTGATGGCG TCCGCCGTGATGAGCTCCCGGTCGAGCCCGTGTCGGGGGTGGTGCCTGTT GCCTATATAGCCGGCGGCGGTGGTGGCAGCGGCGCGGCGGGGGTTGGGGT GGCCGGAGGGAGGGGAGGAGGGGGGAGAGGGGGAGGAAGAGGAGGAGGAG GCAGAGGTGGTGTTACGACTCCGGTTTGGGGAGGTGCGGGCGATGGCGTC CGTCGCAATGAGCCCCCGGTAGAGCCCTCGTCGGGGGTACTTCCTGGTGC CTACATAGCCGGCGGAGGTGGTGGCAGCGGCGGGCCGGGGGTTGGAGTGG GCGGAAGGGGAGGAGGAGGAAGGGGAGGAGAGGGAGGAGGCAGAGATAAT GTTTTGACCCCTGTGCGGGGAGCTACGGGCGATGGCGTCCGTCATAATGA GCTCCCGGTCGAGCCCTCGCCGAGGGTACTTCCTGGTGCCTATATAGCCG GCGGCGGTGGTGGCAGCGGCGGGGTGGGGGTTGGAGTGGGTGGAAGGGGG GGAGGAGGAGGGGGAGGGAGAGGAGGAAGAGGAGCAGGAGGCAGAGGTGG TGTTACGGCTCCGGTGTGGGGAGGTGCGGGCGATGGCGTCCGTCGCACTG AGCCCCCGGTTGAGCCCACAGCGGGGGTGATCCCTGGTGCCTATATAGCC GGCGGTGGTAGTGGCACGGGCGGGACGGGAGTTGGGATGGACGGAGGAGG AAGAGGGGGGGGCATAGGAGGCAGAGGAGGAGGAGCAGGAGGAAGAGGAG GAGGAGGAGGAGGAGCAGCAGGAGCAGGAGCAGGAGGAGCAGGAGCAGGA GCAGGAGGCAGAGGTGGTGTTACGACCCCGGTGTGGGGAGCTGCGGGCAA TGGCGTCCGTCGCGATGAACTCCCGGTCGAGCCCTTGTCGGTGGTGCTCC CTGGTGCCTATATAGCCGGCGGCGGTGGTGGCCACGGCGGGGCGGTGGTT GGGGTGGGCGGTAGAGGAGAAGGAGGGAGAGGAGGAGGAGGAGGAGGGAG GGGGGGAGGAAGAGGAGGAGGAGGAGGCAGAGGTGATGTTATGACCCCGA TGTCGGGAGCTGCGGGCAATTATGAAAGCGTCCGTTACGATGGGCCCCCG GCTGAGCCGTCTTCAGGAGGGGTCCCTGGTGCTTTTGTAGCCGGCGGCGG TAGTGGCAACGGCGGAGCGGGGGTTGGGGTGGGCGGAGGGGGACGAGGAA GAGGAGGAGGAGGGAGAGGAGAAGGAGCGAGGGGAGAAGGAGCGAGGGGA GGAGAAGGAGGGGGGGGAGGAAGAGGGAGAGGAGAAGGAGGGAGAGGAGA AGGGGGGAGGGGAGGAGGAGGAGGGAGGGGAGGAGGAGAAGGAGGGAGGG GAGGAGGGAGAGGAGGAGGAGGCAGAGGTGGTATCGCGACCCCGGTGTGG GGAGCTACGGGCAATTATGAAGGCGTCCGTCATGATGCGCTCCCGGTCGA GCCCATGTCGGGGGTGCCCCCTGGTACCTATGTAACCGGTGGTGGTAGTG GCAGCGGCGGGGCCAGGATTGGCGGTGGAGGCAGAGGAGGAGGAGGAGCT GGAGGGGGTGTTATGAGTAGAGAGGGGCCTTGGCCCGCGCGACCTCTCCA AGGGGCGATGGTGACGGCACAGGTAGCGCCGGGAGGTCTGGCACGCGGTG ATGCGGCGCAGTTGACGGATGACAAGAGAACGAAGACGGAAGATACCCCT GCCCCGGCACAGGTGACGTTCGCCCCGGTCGCCGCCGGAGCTTTGGTGGT CGGCGGTCACGGAGGCGGGGAAGCTACGTCGAATAAGACGACGGGTGGTG GGTGGGGGGGCGGGGGAGGAACGGAACCGCAGGGGTGGGGGGGCGCGAGA GGTGGAGGTGGGGGAGGCCGTGGTGTCGGTGGCAGCGGCGGTGGCGACGG TGTCCCCGAATGGCGCCGGAGCATGCCTTTGGACGCGCTCGCCCCCAACT ATCTGGACTACTTCGTGCGGGAAAGGGAGCGCAAATTCTACAAGTCGGCG GGCATCCTTCCGTACTAGTGAGTGACCGAACGAGCGACGCCCGAGGCCTC GTATTTATATTTCGTTTGTGCATGTTTTTTTGGTATTTCGTGCAAGAGCA CAAAGATGGCGCAGCGGGACGGCGTGAGCGTGTAAGAGCAAGGTTCAGCC AACTGCGAGCGCAGGGGCTGGCTGTTGAAAGCCTGCGTGTGAAGCACTCC GATGCGGTGCGAGAGGTTTACGCCAGCGCCGCGCCGCCTGACCGCTTTGT CTTGCGAGCTCTCCCCTGGATCGGTGGCTCATCTCGCCGCCTCCTATTAG TAGTATAGCCTTTTTTGTTGTTGGGGGTGCAGGATAGGACGTGCACGGCC TGGTTGATCTTGCGTCGTTTTTGGTGGTTTCTTGTGCCTTCGGTCGAATG TTGGGAGGTGCATTGCGCTTCCGTCGCCTGTATATAGCTGTGACCCGTAT ATAGCCGTTGCCGCTGCCTCCCGTCCCCGGTCAGGTTCGAGACGGTTTTG TTTGGCCCCCACAGTTGCTCTGCTCGCATCGCGAGCTCGCGGTCGTTTCT GCTGCATGAGGCACGGGCTTGCGCAGCCGTAGCTGTCAGCTTGTGTATAC GCCTTTTCACTTCAGTATTAGGTCTGTTTTCCCGCGGGACTGCACGGGCT GGTTGATGGATTGACTGATTGACTGGTTTCGATTGATACCGTGCCTCCTG CCTGTCATGACTCTAACGCCATTTTTTTCCCTCGGAGCCGGGGTCACCAA AAAATATATATCAGAAAATGAGGACCCCCCAGCCCACTCCGGTACGCTGA GCAAACGCGCCTTTTTGACGCTAACTTTACTACCGCGCCTTGCCTTGCCT TCCCTTGCCTTGCTTTGGTACGGTAGCCGTGACCCCACAACAGGCGCCGT CTCGATTCTCATTGGAAGCGAGCTTCGAAAGAACAAGCTTGTCCTCAGCT GCTTGGCGGGAAAAAGGGAAGACAACGACGCCGGGCCCGAGCACACCGCG TGGCGCGAGTTCTGGGAGGAGTCGGGAAAGGTAACCCTTGTGCTGTGCTG TATTTCGCTATGCTGCTGTGCTGTCTTGTCCTGTCCTGTCATGTCCTATT CTGTCCTGTCCTGTGCGGTGCGGTGCGGTGCGGTGCGGTGCTGTGCTGTG CTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCCGTG CCGTGCCGTGCCGTGCCGTGCCGTGCCGTGCCGTGGTTGTGCCGTGGTTG TGCCGTGGTTGTGCCGTGGTTGTGCCGTGGCTGTGCCGTACTGTATCGTG CTGTGCCGTGTTTTGTTGTGCTGGTAACTGTAGAGACTTGAGAACACTGC CGCATAGCTCACCGTATGACACAATCCAGCACTTCCTGGCGCCTGCTCTC CCATATGCCCACCCCCCCTTTTCTCCCCCTAACCTACTATATATGCCATG CATTGACACGCAACAAACGACGCTTAACGGACCAGGTTCTCGGTGACTAC GAGCGCGTCACCTTCTTGACTGCGTGCTTCGAGGGCCGCGCTAGGGCGAT GTGGGTTCAGGGGGCCAAAATGGCGGTGCTCGCGTGCGAACTCAGCAGCC CCGCATTCGTCGACCTCCCCCACAAGTACTCCCGGGGCGGCGGCAGCGTC GACAAAGCCGACACCTCCATGCTGGCGCTGCACTGGGTCGGCGCGGCCGA TCTGTACGGCGCCTGCAACGAGGAAGGCGGTAAGGTCGTGGTCTGGGGAC CGCCGCCGCCGCAGCCTAAGGCGGCTGCACTTGCGGCGTCGGCGGCGGCC CAGCCCGGTGGGGGGGCGATAGTCCCTCAGCAGCGACCGCAGCAGCAGCA GCGGCAGCAACAGCAGGGGCAGCAACAGCAGGGGCAGCAACAGCAGGGGC AGCAGCAGCCGCAGCCGCAGCCGCAGCCCCAACAAGACTGGCAAAGGTCT GGAGGAGACCGTTGGCGCTTCAATGGGCCGGGCCATGAGAACCAGGAGCA GGTCGTTGTGGCGAACGAAATGCCAGTGAGGAACGACGGCATCATGAAGG GAAACGGGGGCCGGGTTTCTCCGGGCGCCGTGCAGGGGTTGGCACCTGCC CCGGCTGGGTTTGCGGCAGGACCTGGGGCCGCGCTGTCGCTTCCTCTTCA GCTTCCGCTCGCGCAGCAGGAGCAGCAGCAGAGCCAACAGCAGCAGCAGC AGAGCCAACACCAGCAGCAGCAGCCGCCGCCGCCGCAGCAGCAGCAGCAG CAGCGGCAGCAGCAATACCAGCAACAAAGCCAACACCAGCAGCACCAGTA CCAGCAGCAACACCAGTACCAGCAGCACCGCCAGCAGCACCACCACCACC AGCAGCAACAGCCTCAGCAGCAGCCGCCGCCGCAGCAGCAGCAGCAGCAG CAACCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCCGCCGCCGCAGCAGCA GTACCAGCAGCAGCCGCACCAGCACCAGCACCAGCACCAGCAGCACCAGC AGCCGCCGCCGCAGCAGCAGCAGCCGCCGCCGCAGCAGCAGCAGCCGCAG CAGCAGCAGCAGCAGCAGCCGCAGCAGCAGCAGCCGCAGCAGCCGCAGCA GCAGCCGCAGCAGCAGCAGCAGCAGCCGCCGCAGCAGCCGCCGCAGCAGC AGCAGCCGCCGCAGCAATACCAGCAGCAAGCGCAGCAGCCGCCGCAGCAG CAGCCGCCGCAGCAATACCAGCAGCAAGCGCAGCAGCCGCCGCAGCAGCA ATACCAGCAGCAGGCGCAGCAGCAACAGCAGCAGCAATACCAGCAGCAGG CGCAGCAACCGCAACAGCAGCAATACCAGCAGCCGCCGCAGCAACAGCAA TACCAGCAGCAGCCGCAGCAGCAGCATTACCAGCAGCAGATGCAGCAGCC GCAACAACAGCAGCAGCCGCAGCAGCAGAAACAGCACCTGCCACAGCACC AGCATCTGCAAAAGCATCTGCAGCAGCACCTGCAGCAGCAGCGTGAGCTG CAGCGTCAAGAACAGCAGCAGAACCATCAACAGCCACAACCGCAACAGCA GCCACACCAACAGCGGTTTCAGCACCAGCAAAACCAGCAGCAAAACCAGC AGCAACCGCAACAGCAGCAACCGCAACAGCAGCAACCGCAACAGCAGCAA CCGCAACAGCAGCAACCGCAACAGCAGCAACCGCAACAGCAGCAACCTCA ACAGCAGCAGCAGCAGCAGCAACCGCTGCCGCAACAGCAACAACCCCAGC AGCAACTATACCAGCAGCAGAAGCAGCAGCAGCAACAGCTACAATACCAG CAGCGGCCGCAGCGGCAGCAGCAACAGCAACAACAACCCCAACGCCAGCA GCCGCAGCAGCATCAGCAACAGTATCAGCAACAACCGCAACAGCAGGAGC AACCGCAGCAGCAGCAGCAGCAACAACAACCGCCACGGCACCAACAGCAG CAGCAGAAGCCGCAGCAGCAGCAACAACAACAGCCGCAGCAGCAACAGCA AGATTTGCCCCCTCAGATGGTGGCTACGCCGATCGAGCCTTACCCGCTGC TGAAGACTTTGATCGCCGACGACGCGTTTCGGCAGTTTTTCGCCGACCTC GCGGCCGCAGGAAACAAGGATAAGCCACGCTTCGTCCCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9270:2837..9625+

>mRNA_M-pyrifera_M_contig9270.21443.1 ID=mRNA_M-pyrifera_M_contig9270.21443.1|Name=mRNA_M-pyrifera_M_contig9270.21443.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3708bp|location=Sequence derived from alignment at M-pyrifera_M_contig9270:2837..9625+ (Macrocystis pyrifera P11B4 male)
GGAATTTTCAGGTGGATCACCGTTGGAACAGCCGGTCTGGTCACCCTCTC
GAACTTGGTAGGGGGGAAACACCAGATACCGAACCACCTGCGCTCCTGGA
TGGACGCGGCGCGCGTGTGCGCCCGCGAAGCAGACATAGCTGCTACTGCC
GCCAAGTCGGCAGCAGTCCCAGCCGGCGGCGGCGGGGGGGGCAAAGGTAA
CCAGCACCAGTCGAAGAAACGCAAGTCGAAGCCGCACTCCCTCCCCCAGT
CGGGTCTGGCGGGCATGCTCAAGTTTCTGGGGTGCCCGAAGGACCCGACC
ACCACGCAGCGGACGCGGCGCGGCGTCAACGCGGTGATGAACATCGCCCA
GTGCGTGCGATGCCTCGTGTGCACCGGTGTGTCCATGCCGGTGACCTCGC
GGGTCACTCCGGTGTGGGGACCCACGGGGGGCTACGAAGGCGTCCGCCAC
GATGAGCTCCCGGTCCGTCCCTCGTCGGGGGGGGTTACGAGTAACTTCAT
AGCCGCCGGCGGTGGTGTCAGCGGTGGGGCGCGGGCTGGGGCGGACGGAA
AGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAATGTCACGACCCCTGTG
CGGGGCGTTGCGGGCGATGACGTCCGTCGCGATGGAATTTTCAGGTGGAT
CACCGTTGGAACAGCCGGTCTGGTCACCCTCTCGAACTTGGTAGGGGGGA
AACACCAGATACCGAACCACCTGCGCTCCTGGATGGACGCGGCGCGCGTG
TGCGCCCGCGAAGCAGACATAGCTGCTACTGCCGCCAAGTCGGCAGCAGT
CCCAGCCGGCGGCGGCGGGGGGGGCAAAGGTAACCAGCACCAGTCGAAGA
AACGCAAGTCGAAGCCGCACTCCCTCCCCCAGTCGGGTCTGGCGGGCATG
CTCAAGTTTCTGGGGTGCCCGAAGGACCCGACCACCACGCAGCGGACGCG
GCGCGGCGTCAACGCGGTGATGAACATCGCCCAGTGCGTGCGATGCCTCG
TGTGCACCGGTGTGTCCATGCCGGTGACCTCGCGGGTCACTCCGGTGTGG
GGACCCACGGGGGGCTACGAAGGCGTCCGCCACGATGAGCTCCCGGTCCG
TCCCTCGTCGGGGGGGGTTACGAGTAACTTCATAGCCGCCGGCGGTGGTG
TCAGCGGTGGGGCGCGGGCTGGGGCGGACGGAAAGGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGTAATGTCACGACCCCTGTGCGGGGCGTTGCGGGCGA
TGACGTCCGTCGCGATTTGACGGATGACAAGAGAACGAAGACGGAAGATA
CCCCTGCCCCGGCACAGGTGACGTTCGCCCCGGTCGCCGCCGGAGCTTTG
GTGGTCGGCGGTCACGGAGGCGGGGAAGCTACGTCGAATAAGACGACGGG
TGGTGGGTGGGGGGGCGGGGGAGGAACGGAACCGCAGGGGTGGGGGGGCG
CGAGAGGTGGAGGTGGGGGAGGCCGTGGTGTCGGTGGCAGCGGCGGTGGC
GACGGTGTCCCCGAATGGCGCCGGAGCATGCCTTTGGACGCGCTCGCCCC
CAACTATCTGGACTACTTCGTGCGGGAAAGGGAGCGCAAATTCTACAAGT
CGGCGGGCATCCTTCCGTACTATTGACGGATGACAAGAGAACGAAGACGG
AAGATACCCCTGCCCCGGCACAGGTGACGTTCGCCCCGGTCGCCGCCGGA
GCTTTGGTGGTCGGCGGTCACGGAGGCGGGGAAGCTACGTCGAATAAGAC
GACGGGTGGTGGGTGGGGGGGCGGGGGAGGAACGGAACCGCAGGGGTGGG
GGGGCGCGAGAGGTGGAGGTGGGGGAGGCCGTGGTGTCGGTGGCAGCGGC
GGTGGCGACGGTGTCCCCGAATGGCGCCGGAGCATGCCTTTGGACGCGCT
CGCCCCCAACTATCTGGACTACTTCGTGCGGGAAAGGGAGCGCAAATTCT
ACAAGTCGGCGGGCATCCTTCCGTACTACCGTGACCCCACAACAGGCGCC
GTCTCGATTCTCATTGGAAGCGAGCTTCGAAAGAACAAGCTTGTCCTCAG
CTGCTTGGCGGGAAAAAGGGAAGACAACGACGCCGGGCCCGAGCACACCG
CGTGGCGCGAGTTCTGGGAGGAGTCGGGAAAGCCGTGACCCCACAACAGG
CGCCGTCTCGATTCTCATTGGAAGCGAGCTTCGAAAGAACAAGCTTGTCC
TCAGCTGCTTGGCGGGAAAAAGGGAAGACAACGACGCCGGGCCCGAGCAC
ACCGCGTGGCGCGAGTTCTGGGAGGAGTCGGGAAAGGTTCTCGGTGACTA
CGAGCGCGTCACCTTCTTGACTGCGTGCTTCGAGGGCCGCGCTAGGGCGA
TGTGGGTTCAGGGGGCCAAAATGGCGGTGCTCGCGTGCGAACTCAGCAGC
CCCGCATTCGTCGACCTCCCCCACAAGTACTCCCGGGGCGGCGGCAGCGT
CGACAAAGCCGACACCTCCATGCTGGCGCTGCACTGGGTCGGCGCGGCCG
ATCTGTACGGCGCCTGCAACGAGGAAGGCGGTAAGGTCGTGGTCTGGGGA
CCGCCGCCGCCGCAGCCTAAGGCGGCTGCACTTGCGGCGTCGGCGGCGGC
CCAGCCCGGTGGGGGGGCGATAGTCCCTCAGCAGCGACCGCAGCAGCAGC
AGCGGCAGCAACAGCAGGGGCAGCAACAGCAGGGGCAGCAACAGCAGGGG
CAGCAGCAGCCGCAGCCGCAGCCGCAGCCCCAACAAGACTGGCAAAGGTC
TGGAGGAGACCGTTGGCGCTTCAATGGGCCGGGCCATGAGAACCAGGAGC
AGGTCGTTGTGGCGAACGAAATGCCAGTTCTCGGTGACTACGAGCGCGTC
ACCTTCTTGACTGCGTGCTTCGAGGGCCGCGCTAGGGCGATGTGGGTTCA
GGGGGCCAAAATGGCGGTGCTCGCGTGCGAACTCAGCAGCCCCGCATTCG
TCGACCTCCCCCACAAGTACTCCCGGGGCGGCGGCAGCGTCGACAAAGCC
GACACCTCCATGCTGGCGCTGCACTGGGTCGGCGCGGCCGATCTGTACGG
CGCCTGCAACGAGGAAGGCGGTAAGGTCGTGGTCTGGGGACCGCCGCCGC
CGCAGCCTAAGGCGGCTGCACTTGCGGCGTCGGCGGCGGCCCAGCCCGGT
GGGGGGGCGATAGTCCCTCAGCAGCGACCGCAGCAGCAGCAGCGGCAGCA
ACAGCAGGGGCAGCAACAGCAGGGGCAGCAACAGCAGGGGCAGCAGCAGC
CGCAGCCGCAGCCGCAGCCCCAACAAGACTGGCAAAGGTCTGGAGGAGAC
CGTTGGCGCTTCAATGGGCCGGGCCATGAGAACCAGGAGCAGGTCGTTGT
GGCGAACGAAATGCCACAGCAACAACAACAGCCGCAGCAGCAACAGCAAG
ATTTGCCCCCTCAGATGGTGGCTACGCCGATCGAGCCTTACCCGCTGCTG
AAGACTTTGATCGCCGACGACGCGTTTCGGCAGTTTTTCGCCGACCTCGC
GGCCGCAGGAAACAAGGATAAGCCACGCTTCGTCCCGCAGCAACAACAAC
AGCCGCAGCAGCAACAGCAAGATTTGCCCCCTCAGATGGTGGCTACGCCG
ATCGAGCCTTACCCGCTGCTGAAGACTTTGATCGCCGACGACGCGTTTCG
GCAGTTTTTCGCCGACCTCGCGGCCGCAGGAAACAAGGATAAGCCACGCT
TCGTCCCG
back to top