mRNA_M-pyrifera_M_contig92653.21439.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92653.21439.1
Unique NamemRNA_M-pyrifera_M_contig92653.21439.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92653.21439.1 vs. uniprot
Match: A0A5A8DEC5_CAFRO (Anaphase-promoting complex subunit 11 n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DEC5_CAFRO)

HSP 1 Score: 129 bits (325), Expect = 1.220e-36
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   16 VYFAEWSPVAVWRWKVPDETCGICMMPFDVPAPTAQFPGDESQPVFGRCKHAFHIQCVMQWLDSR-DAGNRTCPLCRQPWELLTYES 273
            V    W+PVA+W+W+VPDETCGICM   D  AP  +FPGDE  PVFGRC HAFH+ C+M+WL+SR DA  + CPLCRQPWE + ++S
Sbjct:    8 VTIKSWTPVAIWKWEVPDETCGICMADMDGCAPGVKFPGDECPPVFGRCGHAFHMPCLMKWLESRTDATGQICPLCRQPWEFVEFKS 94          
BLAST of mRNA_M-pyrifera_M_contig92653.21439.1 vs. uniprot
Match: A0A0D2U3L1_CAPO3 (Anaphase-promoting complex subunit 11 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U3L1_CAPO3)

HSP 1 Score: 102 bits (255), Expect = 7.300e-27
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   28 EWSPVAVWRWKVPDETCGICMMPFDVPAPTAQFPGDESQPVFGRCKHAFHIQCVMQWLDSRDAGNRTCPLCRQPWEL 258
             WS VAVWRWKV D+TCGIC M FD      + PGDE   V+G+CKH FH+ C+++W+ S +A N+ CP+CRQ W+ 
Sbjct:    7 NWSAVAVWRWKVDDDTCGICRMAFDGCCTDCRLPGDECPLVWGQCKHCFHMHCILKWVHSPNA-NQLCPMCRQEWKF 82          
BLAST of mRNA_M-pyrifera_M_contig92653.21439.1 vs. uniprot
Match: W7T4Y4_9STRA (Anaphase-promoting complex subunit 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4Y4_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.700e-26
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   16 VYFAEWSPVAVWRWKVPDETCGICMMPFDVPAPTAQFPGDESQPVFGRCKHAFHIQCVMQWLDSRDAGNR-TCPLCRQPWEL 258
            V    W  VA W+W V DE CGIC   F+   P    PGD+  PV+G C HAFH+ C+M+WL+S+   N+ TCP CRQ WE 
Sbjct:    3 VKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANKQTCPACRQKWEF 84          
BLAST of mRNA_M-pyrifera_M_contig92653.21439.1 vs. uniprot
Match: A0A0G4IMP5_PLABS (Anaphase-promoting complex subunit 11 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IMP5_PLABS)

HSP 1 Score: 99.8 bits (247), Expect = 1.510e-25
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   28 EWSPVAVWRWKVPDETCGICMMPFDVPAPTAQFPGDESQPVFGRCKHAFHIQCVMQWLDSRDAGNRTCPLCRQPWE 255
             W  VAVWRWKV +E+CGIC  PFD   P    PGD+  PV+G C H FHI C+++WL  + +  + CPLCR+ W+
Sbjct:    7 NWRAVAVWRWKVDEESCGICCQPFDGCCPACVSPGDDCPPVWGECNHTFHIHCILKWLKEQ-SSRQQCPLCRRDWQ 81          
BLAST of mRNA_M-pyrifera_M_contig92653.21439.1 vs. uniprot
Match: A0A5B8MNM4_9CHLO (Anaphase-promoting complex subunit 11 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MNM4_9CHLO)

HSP 1 Score: 98.2 bits (243), Expect = 1.110e-24
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   28 EWSPVAVWRWKVPDETCGICMMPFDVPAPTAQFPGDESQPVFGRCKHAFHIQCVMQWLDSRDAGNRTCPLCRQPWEL 258
             W  +A W W   D+ CGIC  PFD  +P A++PGD+S  V+G C+HAFH+QC+ QWL S+    + CP+CRQ WE 
Sbjct:   29 HWRTLASWSWNAGDDVCGICRNPFDGCSPEAKYPGDDSPVVWGTCRHAFHLQCITQWLSSQT--EQRCPICRQNWEF 103          
BLAST of mRNA_M-pyrifera_M_contig92653.21439.1 vs. uniprot
Match: A0A7S2Z1G7_9CHLO (Anaphase-promoting complex subunit 11 n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z1G7_9CHLO)

HSP 1 Score: 98.2 bits (243), Expect = 1.350e-24
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   28 EWSPVAVWRWKVPDETCGICMMPFDVPAPTAQFPGDESQPVFGRCKHAFHIQCVMQWLDSRDAGNRTCPLCRQPWEL 258
             W  +A W W   D+ CGIC  PFD  +P A++PGD+S  V+G C+HAFH+QC+ QWL S+    + CP+CRQ WE 
Sbjct:   34 HWRTLASWSWNAGDDVCGICRNPFDGCSPEAKYPGDDSPVVWGTCRHAFHLQCITQWLSSQT--EQRCPICRQNWEF 108          
BLAST of mRNA_M-pyrifera_M_contig92653.21439.1 vs. uniprot
Match: A0A8J6E1M7_9EUKA (Anaphase-promoting complex subunit 11 n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6E1M7_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 2.050e-24
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   28 EWSPVAVWRWKVPDETCGICMMPFDVPAPTAQFPGDESQPVFGRCKHAFHIQCVMQWLDSRDAGNRTCPLCRQPWEL 258
            +W  VA W+W   +++CGIC MPF++  P    PGD+     G+C HAFHI C+M+WL++   G   CPLCRQP+E 
Sbjct:    7 DWHTVAKWKWLKSEDSCGICQMPFEMACPKCTIPGDDCPVALGKCSHAFHIHCIMKWLEN---GRTECPLCRQPFEF 80          
BLAST of mRNA_M-pyrifera_M_contig92653.21439.1 vs. uniprot
Match: A0A6P5TTJ2_PRUAV (Anaphase-promoting complex subunit 11 n=2 Tax=Prunus TaxID=3754 RepID=A0A6P5TTJ2_PRUAV)

HSP 1 Score: 97.4 bits (241), Expect = 2.500e-24
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    7 LVWVYFAEWSPVAVWRWKVPDETCGICMMPFDVPAPTAQFPGDESQPVFGRCKHAFHIQCVMQWLDSRDAGNRTCPLCRQPWEL 258
            L W +  EW  VA W W   DETCGIC M FD   P  + PGD+   ++G C HAFH+ C+++W++S+      CP+CR+ W+ 
Sbjct:   31 LAWAFQTEWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ-TSQAHCPMCRREWQF 113          
BLAST of mRNA_M-pyrifera_M_contig92653.21439.1 vs. uniprot
Match: F4PL87_CAVFA (Anaphase-promoting complex subunit 11 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PL87_CAVFA)

HSP 1 Score: 95.9 bits (237), Expect = 4.250e-24
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   16 VYFAEWSPVAVWRWKVPDETCGICMMPFDVPAPTAQFPGDESQPVFGRCKHAFHIQCVMQWLDSRDAGNRTCPLCRQPWELLTYE 270
            V   +W  V+ W W V +E CGIC M FD      + PGD+  PV+G CKHAFH+ C+++WL+S     + CP+CR  WE +T +
Sbjct:    3 VTIRKWQTVSSWHWDVSEECCGICRMQFDACCVDCKMPGDDCPPVWGACKHAFHMHCILKWLNS---NQQQCPMCRSNWEFVTTD 84          
BLAST of mRNA_M-pyrifera_M_contig92653.21439.1 vs. uniprot
Match: A0A3B6KSJ6_WHEAT (Anaphase-promoting complex subunit 11 n=5 Tax=Poaceae TaxID=4479 RepID=A0A3B6KSJ6_WHEAT)

HSP 1 Score: 95.1 bits (235), Expect = 8.580e-24
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   16 VYFAEWSPVAVWRWKVPDETCGICMMPFDVPAPTAQFPGDESQPVFGRCKHAFHIQCVMQWLDSRDAGNRTCPLCRQPWEL 258
            V   +W  VA W W   DETCGIC M FD   P  +FPGDE   ++G C HAFH+ C+++W++S+      CP+CR+ W+ 
Sbjct:    3 VKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKFPGDECPIIWGACNHAFHLHCILKWVNSQ-TSTALCPMCRREWQF 82          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92653.21439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DEC5_CAFRO1.220e-3660.92Anaphase-promoting complex subunit 11 n=3 Tax=Cafe... [more]
A0A0D2U3L1_CAPO37.300e-2753.25Anaphase-promoting complex subunit 11 n=1 Tax=Caps... [more]
W7T4Y4_9STRA6.700e-2648.78Anaphase-promoting complex subunit 11 n=2 Tax=Mono... [more]
A0A0G4IMP5_PLABS1.510e-2550.00Anaphase-promoting complex subunit 11 n=1 Tax=Plas... [more]
A0A5B8MNM4_9CHLO1.110e-2449.35Anaphase-promoting complex subunit 11 n=1 Tax=Chlo... [more]
A0A7S2Z1G7_9CHLO1.350e-2449.35Anaphase-promoting complex subunit 11 n=1 Tax=Chlo... [more]
A0A8J6E1M7_9EUKA2.050e-2446.75Anaphase-promoting complex subunit 11 n=1 Tax=Carp... [more]
A0A6P5TTJ2_PRUAV2.500e-2442.86Anaphase-promoting complex subunit 11 n=2 Tax=Prun... [more]
F4PL87_CAVFA4.250e-2443.53Anaphase-promoting complex subunit 11 n=1 Tax=Cave... [more]
A0A3B6KSJ6_WHEAT8.580e-2444.44Anaphase-promoting complex subunit 11 n=5 Tax=Poac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92653contigM-pyrifera_M_contig92653:289..561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score106.3
Seed ortholog evalue7.7e-21
Seed eggNOG ortholog10228.TriadP30014
Preferred nameANAPC11
KEGG koko:K03358
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005730,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009790,GO:0009792,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016043,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022402,GO:0022414,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034450,GO:0036211,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045132,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046872,GO:0046914,GO:0048285,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051321,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0061630,GO:0061659,GO:0062033,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0090068,GO:0097602,GO:0098813,GO:0140013,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903046,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.positive regulation of mitotic metaphase/anaphase transition
EggNOG OGs3A5S4@33154,3BSM4@33208,COG5194@1,KOG1493@2759
COG Functional cat.O
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Exons1
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816839.931505-CDS-M-pyrifera_M_contig92653:288..5611622816839.931505-CDS-M-pyrifera_M_contig92653:288..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92653 289..561 -
1692278209.1603012-CDS-M-pyrifera_M_contig92653:288..5611692278209.1603012-CDS-M-pyrifera_M_contig92653:288..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92653 289..561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92653.21439.1prot_M-pyrifera_M_contig92653.21439.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92653 289..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92653.21439.1

>prot_M-pyrifera_M_contig92653.21439.1 ID=prot_M-pyrifera_M_contig92653.21439.1|Name=mRNA_M-pyrifera_M_contig92653.21439.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
MVLVWVYFAEWSPVAVWRWKVPDETCGICMMPFDVPAPTAQFPGDESQPV
FGRCKHAFHIQCVMQWLDSRDAGNRTCPLCRQPWELLTYES
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mRNA from alignment at M-pyrifera_M_contig92653:289..561-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92653.21439.1 ID=mRNA_M-pyrifera_M_contig92653.21439.1|Name=mRNA_M-pyrifera_M_contig92653.21439.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig92653:289..561- (Macrocystis pyrifera P11B4 male)
ATGGTGTTGGTTTGGGTGTATTTTGCAGAGTGGTCACCCGTTGCTGTGTG GAGATGGAAAGTACCCGATGAGACATGTGGGATTTGCATGATGCCGTTTG ATGTTCCTGCACCAACGGCCCAATTTCCTGGGGATGAAAGTCAACCTGTC TTTGGAAGATGCAAGCATGCATTTCACATTCAATGCGTGATGCAATGGCT TGATAGTCGTGATGCAGGGAATCGGACATGTCCTCTATGTCGTCAACCAT GGGAATTGCTGACATACGAAAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92653:289..561-

>mRNA_M-pyrifera_M_contig92653.21439.1 ID=mRNA_M-pyrifera_M_contig92653.21439.1|Name=mRNA_M-pyrifera_M_contig92653.21439.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig92653:289..561- (Macrocystis pyrifera P11B4 male)
ATGGTGTTGGTTTGGGTGTATTTTGCAGAGTGGTCACCCGTTGCTGTGTG
GAGATGGAAAGTACCCGATGAGACATGTGGGATTTGCATGATGCCGTTTG
ATGTTCCTGCACCAACGGCCCAATTTCCTGGGGATGAAAGTCAACCTGTC
TTTGGAAGATGCAAGCATGCATTTCACATTCAATGCGTGATGCAATGGCT
TGATAGTCGTGATGCAGGGAATCGGACATGTCCTCTATGTCGTCAACCAT
GGGAATTGCTGACATACGAAAGTATGGTGTTGGTTTGGGTGTATTTTGCA
GAGTGGTCACCCGTTGCTGTGTGGAGATGGAAAGTACCCGATGAGACATG
TGGGATTTGCATGATGCCGTTTGATGTTCCTGCACCAACGGCCCAATTTC
CTGGGGATGAAAGTCAACCTGTCTTTGGAAGATGCAAGCATGCATTTCAC
ATTCAATGCGTGATGCAATGGCTTGATAGTCGTGATGCAGGGAATCGGAC
ATGTCCTCTATGTCGTCAACCATGGGAATTGCTGACATACGAAAGT
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