mRNA_M-pyrifera_M_contig92638.21433.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92638.21433.1
Unique NamemRNA_M-pyrifera_M_contig92638.21433.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92638.21433.1 vs. uniprot
Match: A0A518A5G3_9PLAN (Magnesium and cobalt efflux protein CorC n=11 Tax=Gimesia TaxID=1649453 RepID=A0A518A5G3_9PLAN)

HSP 1 Score: 91.7 bits (226), Expect = 1.730e-20
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 ITQFGKVPLPGETMTWQQLRIEVIESDERRISKLRIELDPSLMEEIDAD 147
            ITQFGKVP  GET+TWQQLRIEVIESDERRISKLRIELDPSLMEEIDAD
Sbjct:  387 ITQFGKVPQVGETLTWQQLRIEVIESDERRISKLRIELDPSLMEEIDAD 435
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BLAST of mRNA_M-pyrifera_M_contig92638.21433.1 vs. uniprot
Match: A0A350KBS0_9PLAN (CorC_HlyC domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KBS0_9PLAN)

HSP 1 Score: 84.0 bits (206), Expect = 1.840e-20
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 ITQFGKVPLPGETMTWQQLRIEVIESDERRISKLRIELDPSLMEEIDAD 147
            ITQ GKVP PGETMTWQQLRIEV+ESDERRI+KLRIELD SL+EE D D
Sbjct:    1 ITQIGKVPQPGETMTWQQLRIEVLESDERRINKLRIELDTSLVEEYDTD 49
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BLAST of mRNA_M-pyrifera_M_contig92638.21433.1 vs. uniprot
Match: A0A3D3RB81_9PLAN (HlyC/CorC family transporter n=12 Tax=Planctomycetaceae TaxID=126 RepID=A0A3D3RB81_9PLAN)

HSP 1 Score: 82.8 bits (203), Expect = 2.690e-17
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 ITQFGKVPLPGETMTWQQLRIEVIESDERRISKLRIELDPSLMEEIDAD 147
            ITQ GKVP PGET+TWQQLRIEV+ESDERRI+KLRIELD SL+EE D D
Sbjct:  387 ITQIGKVPQPGETLTWQQLRIEVLESDERRINKLRIELDTSLVEEYDTD 435
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BLAST of mRNA_M-pyrifera_M_contig92638.21433.1 vs. uniprot
Match: A0A518IBE7_9PLAN (Magnesium and cobalt efflux protein CorC n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IBE7_9PLAN)

HSP 1 Score: 79.7 bits (195), Expect = 3.400e-16
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 ITQFGKVPLPGETMTWQQLRIEVIESDERRISKLRIELDPSLMEEIDAD 147
            ITQ GKVP  G+++TWQQLRIEV+ESDERRI+KLRIELDP L+EE DAD
Sbjct:  387 ITQMGKVPQTGDSLTWQQLRIEVLESDERRINKLRIELDPLLVEEFDAD 435
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BLAST of mRNA_M-pyrifera_M_contig92638.21433.1 vs. uniprot
Match: A0A517WVJ8_9PLAN (Magnesium and cobalt efflux protein CorC n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WVJ8_9PLAN)

HSP 1 Score: 75.1 bits (183), Expect = 1.510e-14
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 ITQFGKVPLPGETMTWQQLRIEVIESDERRISKLRIELDPSLMEEIDAD 147
            IT  GKVP  GE++TWQQLRI+V+ESDER+ISKLRIE+D SL+EEID D
Sbjct:  387 ITHVGKVPQAGESLTWQQLRIDVLESDERKISKLRIEVDHSLVEEIDTD 435
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BLAST of mRNA_M-pyrifera_M_contig92638.21433.1 vs. uniprot
Match: A0A5C5XB12_9PLAN (Magnesium and cobalt efflux protein CorC n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A5C5XB12_9PLAN)

HSP 1 Score: 56.6 bits (135), Expect = 5.170e-8
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    4 TQFGKVPLPGETMTWQQLRIEVIESDERRISKLRIELDPSL 126
            TQ GK+PL GET+TWQ +R  ++E+D+RR+ KLRIE D ++
Sbjct:  370 TQLGKIPLQGETLTWQNIRFTILEADKRRLIKLRIEKDETI 410
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BLAST of mRNA_M-pyrifera_M_contig92638.21433.1 vs. uniprot
Match: UPI001EE81C26 (hemolysin family protein n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE81C26)

HSP 1 Score: 55.1 bits (131), Expect = 1.810e-7
Identity = 22/41 (53.66%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    4 TQFGKVPLPGETMTWQQLRIEVIESDERRISKLRIELDPSL 126
            TQ GK+P  GET+TWQ LR+ ++E+D+R++ KLRIE D ++
Sbjct:  376 TQLGKIPTKGETLTWQNLRLTILEADKRKLIKLRIERDETI 416
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BLAST of mRNA_M-pyrifera_M_contig92638.21433.1 vs. uniprot
Match: UPI0004E11538 (hemolysin family protein n=1 Tax=Bryobacter aggregatus TaxID=360054 RepID=UPI0004E11538)

HSP 1 Score: 51.6 bits (122), Expect = 3.040e-6
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   10 FGKVPLPGETMTWQQLRIEVIESDERRISKLRIELDPSLMEEIDAD 147
            FG+VPLPGETM    LR+E++ SDERR+ +LR+   P   E+ DA+
Sbjct:  378 FGRVPLPGETMERDGLRLEILASDERRVERLRLSRAPIPTEDPDAE 423
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BLAST of mRNA_M-pyrifera_M_contig92638.21433.1 vs. uniprot
Match: A0A3E0Q8L9_9BACT (HlyC/CorC family transporter n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q8L9_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 5.690e-6
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 TQFGKVPLPGETMTWQQLRIEVIESDERRISKLRIELDPSLM 129
            ++ G VP P ET TW+ LR  V+++DERRI KLRI +D +L+
Sbjct:  382 SELGHVPAPKETFTWRNLRFTVLDADERRIGKLRIRVDRTLV 423
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92638.21433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A518A5G3_9PLAN1.730e-2093.88Magnesium and cobalt efflux protein CorC n=11 Tax=... [more]
A0A350KBS0_9PLAN1.840e-2083.67CorC_HlyC domain-containing protein (Fragment) n=1... [more]
A0A3D3RB81_9PLAN2.690e-1781.63HlyC/CorC family transporter n=12 Tax=Planctomycet... [more]
A0A518IBE7_9PLAN3.400e-1677.55Magnesium and cobalt efflux protein CorC n=2 Tax=G... [more]
A0A517WVJ8_9PLAN1.510e-1473.47Magnesium and cobalt efflux protein CorC n=2 Tax=G... [more]
A0A5C5XB12_9PLAN5.170e-856.10Magnesium and cobalt efflux protein CorC n=5 Tax=P... [more]
UPI001EE81C261.810e-753.66hemolysin family protein n=1 Tax=Rubinisphaera sp.... [more]
UPI0004E115383.040e-652.17hemolysin family protein n=1 Tax=Bryobacter aggreg... [more]
A0A3E0Q8L9_9BACT5.690e-652.38HlyC/CorC family transporter n=1 Tax=Planctomycete... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92638contigM-pyrifera_M_contig92638:601..753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score83.2
Seed ortholog evalue3.9e-14
Seed eggNOG ortholog344747.PM8797T_00242
Preferred nametlyC
KEGG koko:K06189
KEGG TC9.A.40.1.2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.COG1253 Hemolysins and related
EggNOG OGs2IZAU@203682,COG1253@1,COG1253@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816839.5853136-CDS-M-pyrifera_M_contig92638:600..7531622816839.5853136-CDS-M-pyrifera_M_contig92638:600..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92638 601..753 -
1692278208.9762568-CDS-M-pyrifera_M_contig92638:600..7531692278208.9762568-CDS-M-pyrifera_M_contig92638:600..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92638 601..753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92638.21433.1prot_M-pyrifera_M_contig92638.21433.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92638 601..753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92638.21433.1

>prot_M-pyrifera_M_contig92638.21433.1 ID=prot_M-pyrifera_M_contig92638.21433.1|Name=mRNA_M-pyrifera_M_contig92638.21433.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
ITQFGKVPLPGETMTWQQLRIEVIESDERRISKLRIELDPSLMEEIDADV
*
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mRNA from alignment at M-pyrifera_M_contig92638:601..753-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92638.21433.1 ID=mRNA_M-pyrifera_M_contig92638.21433.1|Name=mRNA_M-pyrifera_M_contig92638.21433.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig92638:601..753- (Macrocystis pyrifera P11B4 male)
ATCACCCAGTTCGGTAAAGTCCCGCTACCGGGAGAAACCATGACCTGGCA
ACAGTTGCGGATTGAGGTCATCGAGTCGGACGAACGCAGAATCAGTAAAC
TACGTATCGAACTTGACCCCTCTCTGATGGAAGAAATCGACGCTGACGTC
TAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92638:601..753-

>mRNA_M-pyrifera_M_contig92638.21433.1 ID=mRNA_M-pyrifera_M_contig92638.21433.1|Name=mRNA_M-pyrifera_M_contig92638.21433.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig92638:601..753- (Macrocystis pyrifera P11B4 male)
ATCACCCAGTTCGGTAAAGTCCCGCTACCGGGAGAAACCATGACCTGGCA
ACAGTTGCGGATTGAGGTCATCGAGTCGGACGAACGCAGAATCAGTAAAC
TACGTATCGAACTTGACCCCTCTCTGATGGAAGAAATCGACGCTGACGTC
TAGATCACCCAGTTCGGTAAAGTCCCGCTACCGGGAGAAACCATGACCTG
GCAACAGTTGCGGATTGAGGTCATCGAGTCGGACGAACGCAGAATCAGTA
AACTACGTATCGAACTTGACCCCTCTCTGATGGAAGAAATCGACGCTGAC
GTCTAG
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