mRNA_M-pyrifera_M_contig92637.21431.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92637.21431.1
Unique NamemRNA_M-pyrifera_M_contig92637.21431.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92637.21431.1 vs. uniprot
Match: A0A2E7KK59_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7KK59_9PLAN)

HSP 1 Score: 295 bits (756), Expect = 6.300e-98
Identity = 149/181 (82.32%), Postives = 158/181 (87.29%), Query Frame = 3 
Query:   66 PQVLNAWVHSARDVVVHPVFLISLFTTIVFNRLNQRRSWQRSIIRWML-----LKVMLIVYLKLPSQVLTCLIALPLCITLLLNQTGWT*SHKTQPRSLNMLFKTGVVVLLLGCALLVWDQKRWSDQIVSKNAGFKQNLAEKTQRWPEKVFLSMWMLPIDCFLPYDNQSEIRELKFLFLNG 593
            PQVLNAWVHSAR   VHPVFLI L+ TIVFNRLNQ+RSWQRSIIRWML     + VMLIVYLKLPS+VLTCLIALPL  TLLLNQTG T + +TQP  L+MLFK GVVVLLLGCALLVW+QK WSDQIVSKNAGFKQNLAE TQRWPEKVFLS W+ PIDCFLPYDNQSEIRELKFLFLNG
Sbjct:   50 PQVLNAWVHSARHAAVHPVFLICLYATIVFNRLNQKRSWQRSIIRWMLFWVVLIMVMLIVYLKLPSRVLTCLIALPLYFTLLLNQTGRTQADETQPLELSMLFKAGVVVLLLGCALLVWNQKMWSDQIVSKNAGFKQNLAEMTQRWPEKVFLSTWVFPIDCFLPYDNQSEIRELKFLFLNG 230
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BLAST of mRNA_M-pyrifera_M_contig92637.21431.1 vs. uniprot
Match: A0A6I6AGS5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AGS5_9PLAN)

HSP 1 Score: 290 bits (741), Expect = 3.040e-92
Identity = 145/181 (80.11%), Postives = 157/181 (86.74%), Query Frame = 3 
Query:   66 PQVLNAWVHSARDVVVHPVFLISLFTTIVFNRLNQRRSWQRSIIRWML-----LKVMLIVYLKLPSQVLTCLIALPLCITLLLNQTGWT*SHKTQPRSLNMLFKTGVVVLLLGCALLVWDQKRWSDQIVSKNAGFKQNLAEKTQRWPEKVFLSMWMLPIDCFLPYDNQSEIRELKFLFLNG 593
            PQVLNAWVHSAR   VHPVFLI L+ TIVFNRLNQ+RSWQRSIIRWML     + VMLIVYLKLPS+VLTCLIALPL  TLLLNQTG T + +TQPR L+MLFK GVVVLLLGCALLVW+QK WSDQIV+KNAGFKQNL E  QRWPE+VFLS W+ PIDCFLPYD+QSEIRELKFLFLNG
Sbjct:  321 PQVLNAWVHSARHAAVHPVFLICLYATIVFNRLNQKRSWQRSIIRWMLFWVVLIMVMLIVYLKLPSRVLTCLIALPLYFTLLLNQTGRTQADETQPRELSMLFKAGVVVLLLGCALLVWNQKMWSDQIVTKNAGFKQNLREMIQRWPERVFLSTWVFPIDCFLPYDDQSEIRELKFLFLNG 501
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BLAST of mRNA_M-pyrifera_M_contig92637.21431.1 vs. uniprot
Match: A0A517PWQ3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PWQ3_9PLAN)

HSP 1 Score: 174 bits (442), Expect = 2.280e-52
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 3 
Query:  351 MLFKTGVVVLLLGCALLVWDQKRWSDQIVSKNAGFKQNLAEKTQRWPEKVFLSMWMLPIDCFLPYDNQSEIRELKFLFLNG 593
            MLFKTGVVVLLLGCALLVWDQKRWSDQIVSKNAGFKQNLAEKTQRWPEKVFLSMWMLPIDCFLPYDNQSEIRELKFLFLNG
Sbjct:    1 MLFKTGVVVLLLGCALLVWDQKRWSDQIVSKNAGFKQNLAEKTQRWPEKVFLSMWMLPIDCFLPYDNQSEIRELKFLFLNG 81
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BLAST of mRNA_M-pyrifera_M_contig92637.21431.1 vs. uniprot
Match: A0A517PWQ8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PWQ8_9PLAN)

HSP 1 Score: 134 bits (336), Expect = 1.130e-37
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 3 
Query:  111 VHPVFLISLFTTIVFNRLNQRRSWQRSIIRWMLLKVMLIVYLKLPSQVLTCLIALPLCITLLLNQTGWT 317
            +HPVFLISLFTTIVFNRLNQRRSWQRSIIRWMLLKVMLIVYLKLPSQVLTCLIALPLCITLLLNQTGWT
Sbjct:    1 MHPVFLISLFTTIVFNRLNQRRSWQRSIIRWMLLKVMLIVYLKLPSQVLTCLIALPLCITLLLNQTGWT 69
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BLAST of mRNA_M-pyrifera_M_contig92637.21431.1 vs. uniprot
Match: A0A517PWR0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PWR0_9PLAN)

HSP 1 Score: 50.1 bits (118), Expect = 6.160e-5
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 1 
Query:    1 ELSLERLQQAKEETDVLRLSQFHRY 75
            ELSLERLQQAKEETDVLRLSQFHRY
Sbjct:   65 ELSLERLQQAKEETDVLRLSQFHRY 89
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92637.21431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2E7KK59_9PLAN6.300e-9882.32Uncharacterized protein (Fragment) n=1 Tax=Gimesia... [more]
A0A6I6AGS5_9PLAN3.040e-9280.11Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517PWQ3_9PLAN2.280e-52100.00Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517PWQ8_9PLAN1.130e-3798.55Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517PWR0_9PLAN6.160e-5100.00Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92637contigM-pyrifera_M_contig92637:2..594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score83.6
Seed ortholog evalue4.7e-14
Seed eggNOG ortholog344747.PM8797T_02679
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E706@1,331J5@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size593
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816839.5040433-CDS-M-pyrifera_M_contig92637:1..2441622816839.5040433-CDS-M-pyrifera_M_contig92637:1..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92637 2..244 -
1692278208.937853-CDS-M-pyrifera_M_contig92637:1..2441692278208.937853-CDS-M-pyrifera_M_contig92637:1..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92637 2..244 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816839.5194683-UTR-M-pyrifera_M_contig92637:244..5941622816839.5194683-UTR-M-pyrifera_M_contig92637:244..594Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92637 245..594 -
1692278208.9499454-UTR-M-pyrifera_M_contig92637:244..5941692278208.9499454-UTR-M-pyrifera_M_contig92637:244..594Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92637 245..594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92637.21431.1prot_M-pyrifera_M_contig92637.21431.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92637 2..244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92637.21431.1

>prot_M-pyrifera_M_contig92637.21431.1 ID=prot_M-pyrifera_M_contig92637.21431.1|Name=mRNA_M-pyrifera_M_contig92637.21431.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
MLFKTGVVVLLLGCALLVWDQKRWSDQIVSKNAGFKQNLAEKTQRWPEKV
FLSMWMLPIDCFLPYDNQSEIRELKFLFLNG
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mRNA from alignment at M-pyrifera_M_contig92637:2..594-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92637.21431.1 ID=mRNA_M-pyrifera_M_contig92637.21431.1|Name=mRNA_M-pyrifera_M_contig92637.21431.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=593bp|location=Sequence derived from alignment at M-pyrifera_M_contig92637:2..594- (Macrocystis pyrifera P11B4 male)
GAATTAAGCCTGGAACGACTACAGCAAGCCAAAGAGGAAACGGATGTCCT
GAGACTCAGTCAATTCCACAGGTATTAAATGCCTGGGTACACTCAGCCAG
AGATGTAGTCGTGCATCCTGTATTTCTGATTTCACTTTTCACTACGATTG
TCTTCAATCGACTGAACCAGAGACGGTCCTGGCAGCGTTCGATTATCAGG
TGGATGTTGCTCAAGGTCATGCTGATCGTTTATCTGAAATTGCCATCGCA
GGTTTTAACCTGTCTGATCGCGCTCCCTTTGTGCATTACCCTGCTGTTGA
ATCAGACCGGTTGGACTTAGTCTCATAAGACACAACCACGTTCACTGAAT
ATGCTGTTTAAAACCGGAGTCGTCGTTCTGCTGCTGGGATGTGCGCTGCT
GGTCTGGGACCAGAAACGGTGGTCAGATCAGATTGTCTCTAAGAACGCCG
GTTTCAAGCAGAATCTGGCAGAGAAGACTCAGCGCTGGCCGGAGAAGGTG
TTTCTCAGTATGTGGATGCTTCCCATCGATTGTTTTCTGCCCTATGACAA
TCAATCCGAAATCAGGGAACTCAAGTTTCTGTTCCTGAACGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92637:2..594-

>mRNA_M-pyrifera_M_contig92637.21431.1 ID=mRNA_M-pyrifera_M_contig92637.21431.1|Name=mRNA_M-pyrifera_M_contig92637.21431.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig92637:2..594- (Macrocystis pyrifera P11B4 male)
ATGCTGTTTAAAACCGGAGTCGTCGTTCTGCTGCTGGGATGTGCGCTGCT
GGTCTGGGACCAGAAACGGTGGTCAGATCAGATTGTCTCTAAGAACGCCG
GTTTCAAGCAGAATCTGGCAGAGAAGACTCAGCGCTGGCCGGAGAAGGTG
TTTCTCAGTATGTGGATGCTTCCCATCGATTGTTTTCTGCCCTATGACAA
TCAATCCGAAATCAGGGAACTCAAGTTTCTGTTCCTGAACGGAATGCTGT
TTAAAACCGGAGTCGTCGTTCTGCTGCTGGGATGTGCGCTGCTGGTCTGG
GACCAGAAACGGTGGTCAGATCAGATTGTCTCTAAGAACGCCGGTTTCAA
GCAGAATCTGGCAGAGAAGACTCAGCGCTGGCCGGAGAAGGTGTTTCTCA
GTATGTGGATGCTTCCCATCGATTGTTTTCTGCCCTATGACAATCAATCC
GAAATCAGGGAACTCAAGTTTCTGTTCCTGAACGGA
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