mRNA_M-pyrifera_M_contig92636.21430.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92636.21430.1
Unique NamemRNA_M-pyrifera_M_contig92636.21430.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92636.21430.1 vs. uniprot
Match: A0A7S1CJ31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJ31_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.880e-13
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    7 HEAQVWRVQWSVTGAVLASAADDGVVRLWSQGLDKTWKCATTLAVQDKVPEG 162
            H+++VWRV+W++TG+VLAS+ DDG+VRLW Q L   WKCAT +      P G
Sbjct:  276 HKSEVWRVEWNITGSVLASSGDDGIVRLWKQSLGGEWKCATEVLSDGSAPRG 327
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BLAST of mRNA_M-pyrifera_M_contig92636.21430.1 vs. uniprot
Match: A0A367JPA0_RHIAZ (Epoxide hydrolase, soluble (SEH) n=5 Tax=Rhizopus TaxID=4842 RepID=A0A367JPA0_RHIAZ)

HSP 1 Score: 63.9 bits (154), Expect = 3.550e-10
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    7 HEAQVWRVQWSVTGAVLASAADDGVVRLWSQGLDKTWKCATTLAVQDKVPEGT 165
            H+A+VWRV+W+VTG +L+S+ DDG +RLW+ G D  W+   T+    +VP  T
Sbjct:  427 HKAEVWRVEWNVTGTILSSSGDDGKLRLWTAGYDGKWRQMATVTANQQVPPST 479
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BLAST of mRNA_M-pyrifera_M_contig92636.21430.1 vs. uniprot
Match: A0A1C7N7J9_9FUNG (Nucleoporin SEH1 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N7J9_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 4.910e-10
Identity = 24/52 (46.15%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 DAHEAQVWRVQWSVTGAVLASAADDGVVRLWSQGLDKTWKCATTLAVQDKVP 156
            D H+A+VWRV+W+VTG +L+S+ DDG +RLW+ G D  W+   ++A   ++P
Sbjct:  561 DDHKAEVWRVEWNVTGTILSSSGDDGRLRLWTTGYDGQWRQMASIAANSQIP 612
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BLAST of mRNA_M-pyrifera_M_contig92636.21430.1 vs. uniprot
Match: UPI000C04B30A (nucleoporin SEH1-like isoform X2 n=3 Tax=Pocilloporidae TaxID=46729 RepID=UPI000C04B30A)

HSP 1 Score: 62.8 bits (151), Expect = 8.410e-10
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    7 HEAQVWRVQWSVTGAVLASAADDGVVRLWSQGLDKTWKCATTL 135
            H++QVWRV+W++TG +LAS+ DDG VRLW       WKC T L
Sbjct:  277 HDSQVWRVEWNITGTILASSGDDGCVRLWKANYLNNWKCITVL 319
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BLAST of mRNA_M-pyrifera_M_contig92636.21430.1 vs. uniprot
Match: A0A1E4T9W5_9ASCO (Uncharacterized protein n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4T9W5_9ASCO)

HSP 1 Score: 62.4 bits (150), Expect = 1.130e-9
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 DAHEAQVWRVQWSVTGAVLASAADDGVVRLWSQGLDKTWKCATTLAVQDKVPEGT 165
            D H+AQVWRV W+VTG VLASA DDG +RLW       ++C + ++ ++K  + T
Sbjct:  291 DDHKAQVWRVSWNVTGTVLASAGDDGRIRLWKSAYSGPFQCMSVISAENKCSDAT 345
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BLAST of mRNA_M-pyrifera_M_contig92636.21430.1 vs. uniprot
Match: UPI0009E2C795 (nucleoporin seh1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2C795)

HSP 1 Score: 62.4 bits (150), Expect = 1.140e-9
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    7 HEAQVWRVQWSVTGAVLASAADDGVVRLWSQGLDKTWKCATTL 135
            HE+QVWRV+W+VTG +LAS+ DDG VRLW       WKC   L
Sbjct:  277 HESQVWRVEWNVTGTILASSGDDGCVRLWKANYLNNWKCIAVL 319
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BLAST of mRNA_M-pyrifera_M_contig92636.21430.1 vs. uniprot
Match: A0A6P8IQV4_ACTTE (nucleoporin SEH1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IQV4_ACTTE)

HSP 1 Score: 62.4 bits (150), Expect = 1.160e-9
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    7 HEAQVWRVQWSVTGAVLASAADDGVVRLWSQGLDKTWKCATTL 135
            HE+QVWRV+W+VTG +LAS+ DDG VRLW       WKC + L
Sbjct:  279 HESQVWRVEWNVTGTILASSGDDGCVRLWKANYLDNWKCISVL 321
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BLAST of mRNA_M-pyrifera_M_contig92636.21430.1 vs. uniprot
Match: A0A433QMD2_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QMD2_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 1.170e-9
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    7 HEAQVWRVQWSVTGAVLASAADDGVVRLWSQGLDKTWKCATTLAVQDK 150
            H A+VWRV+W+VTG +L+S+ DDG VRLW  GL   W+C + ++ + +
Sbjct:  315 HGAEVWRVEWNVTGTILSSSGDDGKVRLWKAGLTDDWRCMSIISAEQR 362
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BLAST of mRNA_M-pyrifera_M_contig92636.21430.1 vs. uniprot
Match: S2IY77_MUCC1 (Uncharacterized protein n=3 Tax=Mucor TaxID=4830 RepID=S2IY77_MUCC1)

HSP 1 Score: 62.0 bits (149), Expect = 1.570e-9
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 DAHEAQVWRVQWSVTGAVLASAADDGVVRLWSQGLDKTWKCATTLAVQDKVP 156
            D H+A+VWRV+W++TG +L+S+ DDG +RLW+ G D  W+   ++    +VP
Sbjct:  302 DDHKAEVWRVEWNITGTILSSSGDDGKLRLWTTGYDGKWRQMASITANTQVP 353
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BLAST of mRNA_M-pyrifera_M_contig92636.21430.1 vs. uniprot
Match: UPI000A2A5BBF (nucleoporin SEH1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5BBF)

HSP 1 Score: 62.0 bits (149), Expect = 1.590e-9
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    7 HEAQVWRVQWSVTGAVLASAADDGVVRLWSQGLDKTWKCATTL 135
            HE+QVWRVQW++TG +LAS+ DDG VRLW       W+C + L
Sbjct:  279 HESQVWRVQWNITGTILASSGDDGCVRLWKANYLDNWRCLSVL 321
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92636.21430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CJ31_9STRA6.880e-1353.85Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A367JPA0_RHIAZ3.550e-1047.17Epoxide hydrolase, soluble (SEH) n=5 Tax=Rhizopus ... [more]
A0A1C7N7J9_9FUNG4.910e-1046.15Nucleoporin SEH1 n=1 Tax=Choanephora cucurbitarum ... [more]
UPI000C04B30A8.410e-1055.81nucleoporin SEH1-like isoform X2 n=3 Tax=Pocillopo... [more]
A0A1E4T9W5_9ASCO1.130e-947.27Uncharacterized protein n=1 Tax=Tortispora caseino... [more]
UPI0009E2C7951.140e-958.14nucleoporin seh1-like n=1 Tax=Orbicella faveolata ... [more]
A0A6P8IQV4_ACTTE1.160e-958.14nucleoporin SEH1-like n=1 Tax=Actinia tenebrosa Ta... [more]
A0A433QMD2_9FUNG1.170e-947.92WD40-repeat-containing domain protein n=1 Tax=Jimg... [more]
S2IY77_MUCC11.570e-944.23Uncharacterized protein n=3 Tax=Mucor TaxID=4830 R... [more]
UPI000A2A5BBF1.590e-955.81nucleoporin SEH1 n=1 Tax=Exaiptasia diaphana TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92636contigM-pyrifera_M_contig92636:3..224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.5
Seed ortholog evalue4.6e-08
Seed eggNOG ortholog36080.S2IY77
Preferred nameSEH1
KEGG koko:K14299
KEGG TC1.I.1
KEGG Pathwayko03013,ko04150,map03013,map04150
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005773,GO:0005774,GO:0006403,GO:0006405,GO:0006407,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0017056,GO:0019898,GO:0022613,GO:0023051,GO:0023056,GO:0031080,GO:0031090,GO:0031224,GO:0031312,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032006,GO:0032008,GO:0032991,GO:0033036,GO:0034399,GO:0034613,GO:0035859,GO:0042254,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0097042,GO:0097064,GO:0098588,GO:0098805,GO:0098852,GO:1902531,GO:1902533,GO:1903432,GO:1904263
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs1GSA6@112252,38GGF@33154,3NU37@4751,KOG2445@1,KOG2445@2759
COG Functional cat.U
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816839.4665973-CDS-M-pyrifera_M_contig92636:2..2241622816839.4665973-CDS-M-pyrifera_M_contig92636:2..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92636 3..224 +
1692278208.9219542-CDS-M-pyrifera_M_contig92636:2..2241692278208.9219542-CDS-M-pyrifera_M_contig92636:2..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92636 3..224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92636.21430.1prot_M-pyrifera_M_contig92636.21430.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92636 3..224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92636.21430.1

>prot_M-pyrifera_M_contig92636.21430.1 ID=prot_M-pyrifera_M_contig92636.21430.1|Name=mRNA_M-pyrifera_M_contig92636.21430.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
DAHEAQVWRVQWSVTGAVLASAADDGVVRLWSQGLDKTWKCATTLAVQDK
VPEGTTFSHAAAAATAAAKYAGE*
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mRNA from alignment at M-pyrifera_M_contig92636:3..224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92636.21430.1 ID=mRNA_M-pyrifera_M_contig92636.21430.1|Name=mRNA_M-pyrifera_M_contig92636.21430.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig92636:3..224+ (Macrocystis pyrifera P11B4 male)
GATGCCCATGAGGCGCAGGTGTGGAGAGTGCAGTGGTCAGTGACGGGCGC
AGTCTTGGCAAGCGCTGCGGACGATGGGGTCGTCAGGCTGTGGTCCCAAG
GGCTCGACAAAACCTGGAAATGTGCCACCACACTTGCTGTGCAGGACAAG
GTGCCGGAAGGAACCACCTTCTCCCACGCCGCAGCCGCAGCAACAGCAGC
GGCAAAGTACGCGGGAGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92636:3..224+

>mRNA_M-pyrifera_M_contig92636.21430.1 ID=mRNA_M-pyrifera_M_contig92636.21430.1|Name=mRNA_M-pyrifera_M_contig92636.21430.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig92636:3..224+ (Macrocystis pyrifera P11B4 male)
GATGCCCATGAGGCGCAGGTGTGGAGAGTGCAGTGGTCAGTGACGGGCGC
AGTCTTGGCAAGCGCTGCGGACGATGGGGTCGTCAGGCTGTGGTCCCAAG
GGCTCGACAAAACCTGGAAATGTGCCACCACACTTGCTGTGCAGGACAAG
GTGCCGGAAGGAACCACCTTCTCCCACGCCGCAGCCGCAGCAACAGCAGC
GGCAAAGTACGCGGGAGAATGAGATGCCCATGAGGCGCAGGTGTGGAGAG
TGCAGTGGTCAGTGACGGGCGCAGTCTTGGCAAGCGCTGCGGACGATGGG
GTCGTCAGGCTGTGGTCCCAAGGGCTCGACAAAACCTGGAAATGTGCCAC
CACACTTGCTGTGCAGGACAAGGTGCCGGAAGGAACCACCTTCTCCCACG
CCGCAGCCGCAGCAACAGCAGCGGCAAAGTACGCGGGAGAATGA
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