mRNA_M-pyrifera_M_contig92627.21426.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92627.21426.1
Unique NamemRNA_M-pyrifera_M_contig92627.21426.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92627.21426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92627contigM-pyrifera_M_contig92627:1..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size525
Cds size522
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816839.3232102-CDS-M-pyrifera_M_contig92627:0..5221622816839.3232102-CDS-M-pyrifera_M_contig92627:0..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92627 1..522 -
1692278208.8476813-CDS-M-pyrifera_M_contig92627:0..5221692278208.8476813-CDS-M-pyrifera_M_contig92627:0..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92627 1..522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816839.3364255-UTR-M-pyrifera_M_contig92627:522..5251622816839.3364255-UTR-M-pyrifera_M_contig92627:522..525Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92627 523..525 -
1692278208.860633-UTR-M-pyrifera_M_contig92627:522..5251692278208.860633-UTR-M-pyrifera_M_contig92627:522..525Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92627 523..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92627.21426.1prot_M-pyrifera_M_contig92627.21426.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92627 1..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92627.21426.1

>prot_M-pyrifera_M_contig92627.21426.1 ID=prot_M-pyrifera_M_contig92627.21426.1|Name=mRNA_M-pyrifera_M_contig92627.21426.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
MKTPTKLAALLLGTALVAAAPPLEMLLSERDHKKIGELVQEYYQAVAEKE
DIADAKAELGEEIVKLEEKFNKRRDDPVAFLEMTDDLRAIFTLAKEVDKR
PPTGKVEEIEAPTFLPQPVKYAVHAPKGYKSSKGAVPLIIVIPDEGVEPA
RCLDDMWMLGEMRNEAVIACVEMP
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mRNA from alignment at M-pyrifera_M_contig92627:1..525-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92627.21426.1 ID=mRNA_M-pyrifera_M_contig92627.21426.1|Name=mRNA_M-pyrifera_M_contig92627.21426.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig92627:1..525- (Macrocystis pyrifera P11B4 male)
CCTATGAAGACACCCACCAAGCTTGCCGCCCTCCTGCTCGGCACCGCGCT
CGTCGCGGCCGCGCCGCCCCTCGAGATGCTGCTCTCCGAGCGCGATCACA
AGAAGATCGGTGAGCTCGTCCAGGAGTACTACCAGGCCGTCGCCGAAAAG
GAGGACATCGCCGACGCCAAGGCCGAGCTGGGCGAGGAGATCGTCAAGCT
CGAGGAGAAGTTCAACAAGCGCCGGGACGACCCGGTCGCCTTCCTCGAGA
TGACCGATGACCTGCGCGCGATCTTCACGCTGGCCAAGGAGGTCGACAAG
CGCCCGCCGACCGGCAAGGTCGAGGAGATCGAGGCGCCGACCTTCCTGCC
CCAGCCGGTGAAGTACGCGGTGCACGCGCCCAAGGGCTACAAGTCCTCCA
AGGGCGCCGTGCCCTTGATCATCGTGATCCCCGACGAGGGCGTCGAGCCG
GCGCGCTGCCTGGACGACATGTGGATGCTGGGTGAGATGCGCAACGAGGC
GGTCATCGCCTGCGTCGAGATGCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92627:1..525-

>mRNA_M-pyrifera_M_contig92627.21426.1 ID=mRNA_M-pyrifera_M_contig92627.21426.1|Name=mRNA_M-pyrifera_M_contig92627.21426.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig92627:1..525- (Macrocystis pyrifera P11B4 male)
ATGAAGACACCCACCAAGCTTGCCGCCCTCCTGCTCGGCACCGCGCTCGT
CGCGGCCGCGCCGCCCCTCGAGATGCTGCTCTCCGAGCGCGATCACAAGA
AGATCGGTGAGCTCGTCCAGGAGTACTACCAGGCCGTCGCCGAAAAGGAG
GACATCGCCGACGCCAAGGCCGAGCTGGGCGAGGAGATCGTCAAGCTCGA
GGAGAAGTTCAACAAGCGCCGGGACGACCCGGTCGCCTTCCTCGAGATGA
CCGATGACCTGCGCGCGATCTTCACGCTGGCCAAGGAGGTCGACAAGCGC
CCGCCGACCGGCAAGGTCGAGGAGATCGAGGCGCCGACCTTCCTGCCCCA
GCCGGTGAAGTACGCGGTGCACGCGCCCAAGGGCTACAAGTCCTCCAAGG
GCGCCGTGCCCTTGATCATCGTGATCCCCGACGAGGGCGTCGAGCCGGCG
CGCTGCCTGGACGACATGTGGATGCTGGGTGAGATGCGCAACGAGGCGGT
CATCGCCTGCGTCGAGATGCCCATGAAGACACCCACCAAGCTTGCCGCCC
TCCTGCTCGGCACCGCGCTCGTCGCGGCCGCGCCGCCCCTCGAGATGCTG
CTCTCCGAGCGCGATCACAAGAAGATCGGTGAGCTCGTCCAGGAGTACTA
CCAGGCCGTCGCCGAAAAGGAGGACATCGCCGACGCCAAGGCCGAGCTGG
GCGAGGAGATCGTCAAGCTCGAGGAGAAGTTCAACAAGCGCCGGGACGAC
CCGGTCGCCTTCCTCGAGATGACCGATGACCTGCGCGCGATCTTCACGCT
GGCCAAGGAGGTCGACAAGCGCCCGCCGACCGGCAAGGTCGAGGAGATCG
AGGCGCCGACCTTCCTGCCCCAGCCGGTGAAGTACGCGGTGCACGCGCCC
AAGGGCTACAAGTCCTCCAAGGGCGCCGTGCCCTTGATCATCGTGATCCC
CGACGAGGGCGTCGAGCCGGCGCGCTGCCTGGACGACATGTGGATGCTGG
GTGAGATGCGCAACGAGGCGGTCATCGCCTGCGTCGAGATGCCC
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