mRNA_M-pyrifera_M_contig92562.21411.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92562.21411.1
Unique NamemRNA_M-pyrifera_M_contig92562.21411.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92562.21411.1 vs. uniprot
Match: A0A5A8BKG6_9PLAN (Uncharacterized protein n=3 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8BKG6_9PLAN)

HSP 1 Score: 268 bits (684), Expect = 7.450e-88
Identity = 133/138 (96.38%), Postives = 134/138 (97.10%), Query Frame = 1
Query:    1 ISRLLKKALLSINSLSLDAPLVAITWLWFFSHIYNCYIIPAHYYILFSVTWLAYFGDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFLLMALNSTELKWGFCLLSLLALYFVSCFCFPHLARSFLP 414
            I RLLKKALLSINSLSLDAPLVAITWLWFFSHIYNCYIIP HYYILFSVTWLAY GDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFLLMALNSTEL+WGFCLLSLLALYF SCFCFPHLARSFLP
Sbjct:   54 IRRLLKKALLSINSLSLDAPLVAITWLWFFSHIYNCYIIPTHYYILFSVTWLAYSGDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFLLMALNSTELRWGFCLLSLLALYFGSCFCFPHLARSFLP 191          
BLAST of mRNA_M-pyrifera_M_contig92562.21411.1 vs. uniprot
Match: A0A517PY59_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517PY59_9PLAN)

HSP 1 Score: 240 bits (612), Expect = 3.100e-77
Identity = 119/138 (86.23%), Postives = 125/138 (90.58%), Query Frame = 1
Query:    1 ISRLLKKALLSINSLSLDAPLVAITWLWFFSHIYNCYIIPAHYYILFSVTWLAYFGDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFLLMALNSTELKWGFCLLSLLALYFVSCFCFPHLARSFLP 414
            I  L KKALL INSLSLDAPLVAITWLW FS IYNC +IPAHYYILFSVTWLAY GDRLLDTLRTPGSIRNTPRHRFTSQHF+ LLGLWLL ATFSVCFLL+A+NSTELKWGFCLLS+L LYF SC+CFPHLAR FLP
Sbjct:   32 IRHLPKKALLLINSLSLDAPLVAITWLWCFSRIYNCSVIPAHYYILFSVTWLAYSGDRLLDTLRTPGSIRNTPRHRFTSQHFILLLGLWLLIATFSVCFLLVAINSTELKWGFCLLSVLVLYFASCYCFPHLARRFLP 169          
BLAST of mRNA_M-pyrifera_M_contig92562.21411.1 vs. uniprot
Match: A0A518AFL2_9PLAN (Uncharacterized protein n=5 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AFL2_9PLAN)

HSP 1 Score: 177 bits (450), Expect = 9.390e-53
Identity = 90/133 (67.67%), Postives = 107/133 (80.45%), Query Frame = 1
Query:   13 LKKALLSINSLSLDAPLVAITWLWFFSHIYNCYIIPAHYYILFSVTWLAYFGDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFLLMALNSTELKWGFCLLSLLALYFVSCFCFPHLARSFL 411
            L+KA+L +NSLSLDAPLVA+TWLW  S +Y C I+  HYYILFSVTWLAY GDRLLDTLR PG+IR+TPRH+FTS+HF PLL +W LTA  SVC LL++L+ TEL WG  LL LL++YF+SCF  P LAR  L
Sbjct:   36 LEKAVLLLNSLSLDAPLVAVTWLWCLSKLYLCPILMHHYYILFSVTWLAYSGDRLLDTLRMPGNIRHTPRHQFTSRHFKPLLFIWSLTAISSVCVLLISLSPTELIWGLILLGLLSIYFISCFYIPQLARRIL 168          
BLAST of mRNA_M-pyrifera_M_contig92562.21411.1 vs. uniprot
Match: A0A517WNI6_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WNI6_9PLAN)

HSP 1 Score: 154 bits (389), Expect = 1.300e-43
Identity = 77/133 (57.89%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   16 KKALLSINSLSLDAPLVAITWLWFFSHIYNCYIIPAHYYILFSVTWLAYFGDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFLLMALNSTELKWGFCLLSLLALYFVSCFCFPHLARSFLP 414
            ++ LL INS S DAPLV + WLW FS IY+  I   HY ILFSVTWL+Y GDRLLD+LR P      PRH+F + HF PL+ +W L ATFSV FL  AL+ TE+ WGFCLL LL +YF+ CFCFP   R+ +P
Sbjct:   36 ERTLLLINSTSFDAPLVGVVWLWCFSSIYSVDIYFHHYLILFSVTWLSYSGDRLLDSLRMPAVYCKLPRHQFATTHFKPLICIWALIATFSVLFLFHALSLTEIVWGFCLLGLLLIYFLGCFCFPRQMRAIVP 168          
BLAST of mRNA_M-pyrifera_M_contig92562.21411.1 vs. uniprot
Match: A0A518IL83_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IL83_9PLAN)

HSP 1 Score: 141 bits (355), Expect = 1.470e-38
Identity = 71/134 (52.99%), Postives = 94/134 (70.15%), Query Frame = 1
Query:   13 LKKALLSINSLSLDAPLVAITWLWFFSHIYNCYIIPAHYYILFSVTWLAYFGDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFLLMALNSTELKWGFCLLSLLALYFVSCFCFPHLARSFLP 414
            L++ LL +NSLSLDAP V + WLW  S +++  I    Y +LFSVTWL+Y GDRLLD++RTP      PRH FTS HF PL+ +W L A +S+ +L + L  TE+ WG CLL+LL+LY++ CF FP+LAR  LP
Sbjct:   31 LEQTLLLVNSLSLDAPFVGVIWLWCLSTVFSSRIGFQQYLVLFSVTWLSYAGDRLLDSIRTPVKPCTAPRHLFTSMHFKPLMCVWGLVAVYSILYLGLNLGRTEIIWGVCLLALLSLYYLCCFYFPNLARGLLP 164          
BLAST of mRNA_M-pyrifera_M_contig92562.21411.1 vs. uniprot
Match: A0A517VMY5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VMY5_9PLAN)

HSP 1 Score: 143 bits (360), Expect = 1.660e-38
Identity = 75/132 (56.82%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   19 KALLSINSLSLDAPLVAITWLWFFSHIYNCYIIPAHYYILFSVTWLAYFGDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFLLMALNSTELKWGFCLLSLLALYFVSCFCFPHLARSFLP 414
            K LL  NSLSLDAP VAI WLW FS +Y+  I  +HY+ILFSVTWLAY GDRLLD+LR P     TPRHRFTS++F PL   W++ A  S   L  +L +TEL WGF L  +L++YF+SCF  P   R  LP
Sbjct:  120 KILLLFNSLSLDAPFVAIAWLWCFSVLYSTKIDFSHYFILFSVTWLAYLGDRLLDSLRIPDVPDKTPRHRFTSEYFPPLFVCWVILAFISAICLFYSLTTTELVWGFSLFFVLSIYFLSCFYLPGFGRGVLP 251          
BLAST of mRNA_M-pyrifera_M_contig92562.21411.1 vs. uniprot
Match: A0A2E2C2G5_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C2G5_9PLAN)

HSP 1 Score: 140 bits (352), Expect = 8.400e-38
Identity = 78/138 (56.52%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    1 ISRLLKKALLSINSLSLDAPLVAITWLWFFSHIYNCYIIPAHYYILFSVTWLAYFGDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFLLMALNSTELKWGFCLLSLLALYFVSCFCFPHLARSFLP 414
            +S+   K LL +NSLSLDAP VAITWLW FS  Y+  +    Y+ILFSVTWLAY GDRLLD+LR P +   TPRHRFT + F PLL  W L A  S   L   L   EL WGF LL +LA+YF+SCF  P  AR  LP
Sbjct:   59 VSQFPAKILLLVNSLSLDAPFVAITWLWCFSTRYSTKVEIHDYFILFSVTWLAYLGDRLLDSLRLPDAPERTPRHRFTREFFWPLLICWGLVALISTICLFELLTKIELVWGFGLLFVLAIYFLSCFYIPKFARGLLP 196          
BLAST of mRNA_M-pyrifera_M_contig92562.21411.1 vs. uniprot
Match: A0A517RPN8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RPN8_9PLAN)

HSP 1 Score: 139 bits (349), Expect = 1.150e-37
Identity = 72/134 (53.73%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   13 LKKALLSINSLSLDAPLVAITWLWFFSHIYNCYIIPAHYYILFSVTWLAYFGDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFLLMALNSTELKWGFCLLSLLALYFVSCFCFPHLARSFLP 414
            L+K  L +NSLSLDAP V + WLW  S +Y+  I   HY ILFSVTWLAY GDRLLD++RTP      PRH FTS +F PL+  W L A  S+ +L + L  TE+ WG  LL+LL++Y++ CF FP+LAR  LP
Sbjct:   31 LEKIFLLVNSLSLDAPFVGVIWLWCLSAVYSSRIGFHHYLILFSVTWLAYAGDRLLDSIRTPAKPCMAPRHLFTSMYFKPLMCAWGLVAVISILYLGLNLGRTEIVWGMSLLALLSIYYLCCFYFPNLARGLLP 164          
BLAST of mRNA_M-pyrifera_M_contig92562.21411.1 vs. uniprot
Match: A6C3S5_9PLAN (Uncharacterized protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A6C3S5_9PLAN)

HSP 1 Score: 137 bits (344), Expect = 9.180e-37
Identity = 73/132 (55.30%), Postives = 86/132 (65.15%), Query Frame = 1
Query:   19 KALLSINSLSLDAPLVAITWLWFFSHIYNCYIIPAHYYILFSVTWLAYFGDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFLLMALNSTELKWGFCLLSLLALYFVSCFCFPHLARSFLP 414
            K LL  NSLSLDAP VAITWLW FS +Y+  +   HY+ILFSVTWLAY GDRLLD+ R P       RHRFTS+ F PLL  W++ A  S   L   L STEL WG  L  +L++YF+SCF  P + R  LP
Sbjct:   49 KILLLFNSLSLDAPFVAITWLWCFSALYSTKVDFQHYFILFSVTWLAYLGDRLLDSFRIPDVPDKAQRHRFTSEFFQPLLVCWVVLAFISTVCLFCFLTSTELIWGITLFIVLSIYFMSCFFLPRIGRGILP 180          
BLAST of mRNA_M-pyrifera_M_contig92562.21411.1 vs. uniprot
Match: F0SRJ2_RUBBR (Uncharacterized protein n=2 Tax=Rubinisphaera TaxID=1649490 RepID=F0SRJ2_RUBBR)

HSP 1 Score: 77.8 bits (190), Expect = 1.900e-14
Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    7 RLLKKALLSINSLSLDAPLVAITWLWFFSHIYNCYIIPAHYYILFSVTWLAYFGDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFLLMALNSTELKWGFCLLSLLALYFVSCFCFPHLARSFLP 414
            R +K+ LL++N LSLDAPLVA+ W    +H  +  ++ +   +L   TWL Y GDRLLD      S    PRHRF  ++   LL LW + A  ++  + +A++         L   L LYF++C  FP +AR  +P
Sbjct:   15 RQVKRTLLALNVLSLDAPLVALAWQDLIAHQLDASLLFSQRIVLGLTTWLVYAGDRLLDARPELDSQSRLPRHRFAGRNRRKLLALWGIGAIGNLLLIPVAMSRGAWPVAIGLGIALVLYFLACERFPRIARRLIP 150          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92562.21411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A5A8BKG6_9PLAN7.450e-8896.38Uncharacterized protein n=3 Tax=Gimesia chilikensi... [more]
A0A517PY59_9PLAN3.100e-7786.23Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A518AFL2_9PLAN9.390e-5367.67Uncharacterized protein n=5 Tax=Gimesia panareensi... [more]
A0A517WNI6_9PLAN1.300e-4357.89Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A518IL83_9PLAN1.470e-3852.99Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A517VMY5_9PLAN1.660e-3856.82Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A2E2C2G5_9PLAN8.400e-3856.52Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A517RPN8_9PLAN1.150e-3753.73Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A6C3S5_9PLAN9.180e-3755.30Uncharacterized protein n=5 Tax=Planctomycetaceae ... [more]
F0SRJ2_RUBBR1.900e-1436.76Uncharacterized protein n=2 Tax=Rubinisphaera TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92562contigM-pyrifera_M_contig92562:350..763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score136.7
Seed ortholog evalue8e-30
Seed eggNOG ortholog344747.PM8797T_10704
Hectar predicted targeting categorymitochondrion
EggNOG OGs2DPEK@1,2J1AM@203682,331S2@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.5725603-CDS-M-pyrifera_M_contig92562:349..7631622816838.5725603-CDS-M-pyrifera_M_contig92562:349..763Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92562 350..763 +
1692278208.4349568-CDS-M-pyrifera_M_contig92562:349..7631692278208.4349568-CDS-M-pyrifera_M_contig92562:349..763Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92562 350..763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92562.21411.1prot_M-pyrifera_M_contig92562.21411.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92562 350..763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92562.21411.1

>prot_M-pyrifera_M_contig92562.21411.1 ID=prot_M-pyrifera_M_contig92562.21411.1|Name=mRNA_M-pyrifera_M_contig92562.21411.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
ISRLLKKALLSINSLSLDAPLVAITWLWFFSHIYNCYIIPAHYYILFSVT
WLAYFGDRLLDTLRTPGSIRNTPRHRFTSQHFVPLLGLWLLTATFSVCFL
LMALNSTELKWGFCLLSLLALYFVSCFCFPHLARSFLP
back to top

mRNA from alignment at M-pyrifera_M_contig92562:350..763+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92562.21411.1 ID=mRNA_M-pyrifera_M_contig92562.21411.1|Name=mRNA_M-pyrifera_M_contig92562.21411.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig92562:350..763+ (Macrocystis pyrifera P11B4 male)
ATCAGCCGTCTCCTCAAGAAGGCGTTATTATCGATCAATTCTCTCAGCCT GGATGCCCCCCTGGTTGCCATTACCTGGCTCTGGTTCTTCTCTCACATAT ACAATTGCTACATTATTCCAGCTCACTACTACATATTATTTAGTGTCACC TGGCTGGCCTATTTCGGAGATCGACTGCTGGACACACTGAGAACCCCTGG GAGCATTAGAAATACTCCGCGCCATCGGTTCACCTCTCAGCATTTCGTAC CTTTACTCGGACTCTGGTTACTTACAGCCACGTTTTCCGTTTGTTTCCTG TTGATGGCACTTAACTCTACAGAATTGAAGTGGGGCTTTTGCCTGTTATC ATTACTGGCATTGTATTTCGTGAGTTGCTTTTGTTTTCCTCATCTTGCCA GAAGTTTTCTGCCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig92562:350..763+

>mRNA_M-pyrifera_M_contig92562.21411.1 ID=mRNA_M-pyrifera_M_contig92562.21411.1|Name=mRNA_M-pyrifera_M_contig92562.21411.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig92562:350..763+ (Macrocystis pyrifera P11B4 male)
ATCAGCCGTCTCCTCAAGAAGGCGTTATTATCGATCAATTCTCTCAGCCT
GGATGCCCCCCTGGTTGCCATTACCTGGCTCTGGTTCTTCTCTCACATAT
ACAATTGCTACATTATTCCAGCTCACTACTACATATTATTTAGTGTCACC
TGGCTGGCCTATTTCGGAGATCGACTGCTGGACACACTGAGAACCCCTGG
GAGCATTAGAAATACTCCGCGCCATCGGTTCACCTCTCAGCATTTCGTAC
CTTTACTCGGACTCTGGTTACTTACAGCCACGTTTTCCGTTTGTTTCCTG
TTGATGGCACTTAACTCTACAGAATTGAAGTGGGGCTTTTGCCTGTTATC
ATTACTGGCATTGTATTTCGTGAGTTGCTTTTGTTTTCCTCATCTTGCCA
GAAGTTTTCTGCCGATCAGCCGTCTCCTCAAGAAGGCGTTATTATCGATC
AATTCTCTCAGCCTGGATGCCCCCCTGGTTGCCATTACCTGGCTCTGGTT
CTTCTCTCACATATACAATTGCTACATTATTCCAGCTCACTACTACATAT
TATTTAGTGTCACCTGGCTGGCCTATTTCGGAGATCGACTGCTGGACACA
CTGAGAACCCCTGGGAGCATTAGAAATACTCCGCGCCATCGGTTCACCTC
TCAGCATTTCGTACCTTTACTCGGACTCTGGTTACTTACAGCCACGTTTT
CCGTTTGTTTCCTGTTGATGGCACTTAACTCTACAGAATTGAAGTGGGGC
TTTTGCCTGTTATCATTACTGGCATTGTATTTCGTGAGTTGCTTTTGTTT
TCCTCATCTTGCCAGAAGTTTTCTGCCG
back to top